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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC23IP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC23IP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
0.8
685
Tumor
0.7
925
Tumor
0.6
617
Tumor
0.6
1027
Tumor
0.5
567
Tumor
0.5
1025
Tumor
0.5
123
Tumor
0.5
1021
Tumor
0.5
983
Tumor
0.5
537
Tumor
0.4
271
Tumor
0.4
351
Tumor
0.4
951
Tumor
0.4
967
Tumor
0.4
965
Tumor
0.4
195
Tumor
0.4
743
Tumor
0.4
327
Tumor
0.4
937
Tumor
0.4
553
Tumor
0.4
353
Tumor
0.4
815
Tumor
0.4
363
Tumor
0.3
395
Tumor
0.3
533
Tumor
0.3
223
Tumor
0.3
285
Tumor
0.3
697
Tumor
0.3
881
Tumor
0.3
421
Tumor
0.3
387
Tumor
0.3
391
Tumor
0.3
147
Tumor
0.3
911
Tumor
0.3
113
Tumor
0.3
921
Tumor
0.3
527
Tumor
0.3
145
Tumor
0.3
171
Tumor
0.3
981
Tumor
0.3
367
Tumor
0.2
713
Tumor
0.2
187
Tumor
0.2
221
Tumor
0.2
191
Tumor
0.2
443
Tumor
0.2
331
Tumor
0.2
131
Tumor
0.2
727
Tumor
0.2
755
Tumor
0.2
1043
Tumor
0.2
467
Tumor
0.2
471
Tumor
0.2
257
Tumor
0.2
411
Tumor
0.2
1042
Normal
0.2
628
Normal
0.2
917
Tumor
0.1
211
Tumor
0.1
414
Normal
0.1
868
Normal
0.1
742
Normal
0.1
1014
Normal
0.1
746
Normal
0.1
647
Tumor
0.1
341
Tumor
0.1
413
Tumor
0.1
883
Tumor
0.1
328
Normal
0.1
525
Tumor
0.1
426
Normal
0.1
813
Tumor
0.1
446
Normal
0.1
518
Normal
0.1
721
Tumor
0.1
738
Normal
0.1
877
Tumor
0.1
817
Tumor
0.1
1032
Normal
0.1
968
Normal
0.1
1016
Normal
0.1
984
Normal
0.1
568
Normal
0.1
741
Tumor
0.1
756
Normal
0.1
616
Normal
0.1
918
Normal
0.1
724
Normal
0.1
641
Tumor
0.1
912
Normal
0.1
473
Tumor
0.1
1046
Normal
0.1
963
Tumor
0.1
535
Tumor
0.1
661
Tumor
0.1
472
Normal
0.1
136
Normal
0.1
162
Normal
0.1
851
Tumor
0.1
924
Normal
0.1
696
Normal
0.1
635
Tumor
0.1
356
Normal
0.1
297
Tumor
0.1
642
Normal
0.1
716
Normal
0.1
451
Tumor
0.1
528
Normal
0.1
148
Normal
0.1
212
Normal
0.1
477
Tumor
0.1
523
Tumor
0.1
862
Normal
0.1
474
Normal
0.1
873
Tumor
0.1
393
Tumor
0.1
866
Normal
0.1
964
Normal
0.1
884
Normal
0.0
728
Normal
0.0
982
Normal
0.0
823
Tumor
0.0
953
Tumor
0.0
361
Tumor
0.0
786
Normal
0.0
824
Normal
0.0
412
Normal
0.0
127
Tumor
0.0
944
Normal
0.0
814
Normal
0.0
434
Normal
0.0
422
Normal
0.0
922
Normal
0.0
286
Normal
0.0
714
Normal
0.0
424
Normal
0.0
955
Tumor
0.0
723
Tumor
0.0
132
Normal
0.0
858
Normal
0.0
695
Tumor
0.0
135
Tumor
0.0
952
Normal
0.0
864
Normal
0.0
517
Tumor
0.0
172
Normal
0.0
483
Tumor
0.0
615
Tumor
0.0
546
Normal
0.0
571
Tumor
0.0
468
Normal
0.0
464
Normal
0.0
1026
Normal
0.0
554
Normal
0.0
558
Normal
0.0
545
Tumor
0.0
214
Normal
0.0
564
Normal
0.0
526
Normal
0.0
882
Normal
0.0
481
Tumor
0.0
686
Normal
0.0
1022
Normal
0.0
914
Normal
0.0
816
Normal
0.0
916
Normal
0.0
392
Normal
0.0
715
Tumor
0.0
431
Tumor
0.0
665
Tumor
0.0
1028
Normal
0.0
428
Normal
0.0
261
Tumor
0.0
368
Normal
0.0
114
Normal
0.0
227
Tumor
0.0
722
Normal
0.0
358
Normal
0.0
196
Normal
0.0
352
Normal
0.0
137
Tumor
0.0
867
Tumor
0.0
618
Normal
0.0
435
Tumor
0.0
462
Normal
N/A
975
Tumor
0.0
923
Tumor
0.0
636
Normal
0.0
416
Normal
0.0
466
Normal
0.0
938
Normal
0.0
111
Normal
0.0
385
Tumor
0.0
231
Tumor
0.0
376
Normal
0.0
672
Normal
0.0
926
Normal
0.0
232
Normal
0.0
432
Normal
0.0
146
Normal
0.0
956
Normal
0.0
664
Normal
0.0
311
Tumor
0.0
484
Normal
0.0
648
Normal
0.0
494
Normal
0.0
138
Normal
0.0
362
Normal
0.0
744
Normal
0.0
125
Tumor
0.0
448
Normal
0.0
126
Normal
0.0
188
Normal
0.0
818
Normal
0.0
1041
Tumor
0.0
364
Normal
0.0
142
Normal
0.0
186
Normal
0.0
852
Normal
0.0
444
Normal
0.0
258
Normal
-0.1
514
Normal
-0.1
557
Tumor
-0.1
277
Tumor
-0.1
396
Normal
-0.1
427
Tumor
-0.1
1044
Normal
-0.1
185
Tumor
-0.1
284
Normal
-0.1
262
Normal
-0.1
958
Normal
-0.1
778
Normal
-0.1
913
Tumor
-0.1
344
Normal
-0.1
861
Tumor
-0.1
878
Normal
-0.1
874
Normal
-0.1
488
Normal
-0.1
128
Normal
-0.1
415
Tumor
-0.1
666
Normal
-0.1
228
Normal
-0.1
465
Tumor
-0.1
572
Normal
-0.1
482
Normal
-0.1
192
Normal
-0.1
563
Tumor
-0.1
534
Normal
-0.1
915
Tumor
-0.1
957
Tumor
-0.1
452
Normal
-0.1
213
Tumor
-0.1
976
Normal
-0.1
217
Tumor
-0.1
662
Normal
-0.1
278
Normal
-0.1
436
Normal
-0.1
966
Normal
-0.1
1031
Tumor
-0.1
954
Normal
-0.1
357
Tumor
-0.1
536
Normal
-0.1
492
Normal
-0.1
497
Tumor
-0.1
524
Normal
-0.1
272
Normal
-0.1
218
Normal
-0.1
224
Normal
-0.1
386
Normal
-0.1
222
Normal
-0.1
516
Normal
-0.1
698
Normal
-0.1
267
Tumor
-0.1
366
Normal
-0.1
493
Tumor
-0.1
785
Tumor
-0.1
433
Tumor
-0.1
354
Normal
-0.1
388
Normal
-0.1
498
Normal
-0.1
574
Normal
-0.1
394
Normal
-0.2
978
Normal
-0.2
375
Tumor
-0.2
1045
Tumor
-0.2
124
Normal
-0.2
312
Normal
-0.2
342
Normal
-0.2
478
Normal
-0.2
298
Normal
-0.2
1015
Tumor
-0.2
538
Normal
-0.2
268
Normal
-0.2
355
Tumor
-0.2
737
Tumor
-0.2
671
Tumor
-0.2
314
Normal
-0.2
332
Normal
-0.2
445
Tumor
-0.2
487
Tumor
-0.3
343
Tumor
-0.3
573
Tumor
-0.3
283
Tumor
-0.3
447
Tumor
-0.3
384
Normal
-0.3
141
Tumor
-0.3
112
Tumor
-0.3
857
Tumor
-0.3
491
Tumor
-0.3
425
Tumor
-0.3
977
Tumor
-0.3
1013
Tumor
-0.3
943
Tumor
-0.4
513
Tumor
-0.4
383
Tumor
-0.4
627
Tumor
-0.4
463
Tumor
-0.4
461
Tumor
-0.4
313
Tumor
-0.4
863
Tumor
-0.4
777
Tumor
-0.4
365
Tumor
-0.4
455
Tumor
-0.4
515
Tumor
-0.4
161
Tumor
-0.4
456
Normal
-0.5
423
Tumor
-0.5
865
Tumor
-0.6
663
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
