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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERLIN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
61.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
57.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
56.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
55.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
51.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
44.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
41.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
39.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
35.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
27.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERLIN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
90.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
66.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
60.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
60.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
53.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
48.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
44.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
44.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
43.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
636
Normal
0.9
878
Normal
0.8
426
Normal
0.8
554
Normal
0.8
778
Normal
0.8
698
Normal
0.7
128
Normal
0.7
938
Normal
0.7
738
Normal
0.7
1026
Normal
0.7
746
Normal
0.7
412
Normal
0.7
1022
Normal
0.7
944
Normal
0.7
744
Normal
0.7
723
Tumor
0.6
228
Normal
0.6
862
Normal
0.6
866
Normal
0.6
488
Normal
0.6
1014
Normal
0.6
714
Normal
0.6
952
Normal
0.6
958
Normal
0.6
816
Normal
0.6
448
Normal
0.6
286
Normal
0.6
342
Normal
0.6
818
Normal
0.6
111
Normal
0.6
196
Normal
0.6
572
Normal
0.6
956
Normal
0.6
968
Normal
0.6
356
Normal
0.5
534
Normal
0.5
882
Normal
0.5
864
Normal
0.5
332
Normal
0.5
368
Normal
0.5
618
Normal
0.5
648
Normal
0.5
984
Normal
0.5
298
Normal
0.5
232
Normal
0.5
1044
Normal
0.5
728
Normal
0.5
742
Normal
0.5
494
Normal
0.5
1046
Normal
0.5
672
Normal
0.5
954
Normal
0.5
422
Normal
0.5
376
Normal
0.5
186
Normal
0.5
148
Normal
0.5
142
Normal
0.5
414
Normal
0.5
912
Normal
0.5
628
Normal
0.5
642
Normal
0.5
564
Normal
0.5
466
Normal
0.5
722
Normal
0.5
1032
Normal
0.4
546
Normal
0.4
924
Normal
0.4
716
Normal
0.4
518
Normal
0.4
484
Normal
0.4
528
Normal
0.4
468
Normal
0.4
964
Normal
0.4
1016
Normal
0.4
358
Normal
0.4
686
Normal
0.4
526
Normal
0.4
558
Normal
0.4
914
Normal
0.4
922
Normal
0.4
1028
Normal
0.4
452
Normal
0.4
314
Normal
0.4
852
Normal
0.4
868
Normal
0.4
364
Normal
0.4
482
Normal
0.4
132
Normal
0.4
926
Normal
0.4
388
Normal
0.4
568
Normal
0.3
664
Normal
0.3
696
Normal
0.3
524
Normal
0.3
352
Normal
0.3
824
Normal
0.3
462
Normal
0.3
258
Normal
0.3
616
Normal
0.3
966
Normal
0.3
212
Normal
0.3
328
Normal
0.3
884
Normal
0.3
538
Normal
0.3
344
Normal
0.3
464
Normal
0.3
435
Tumor
0.3
214
Normal
0.3
574
Normal
0.3
858
Normal
0.3
756
Normal
0.3
685
Tumor
0.3
436
Normal
0.3
424
Normal
0.3
727
Tumor
0.3
456
Normal
0.3
514
Normal
0.3
874
Normal
0.3
982
Normal
0.3
416
Normal
0.3
366
Normal
0.3
124
Normal
0.3
278
Normal
0.3
227
Tumor
0.3
363
Tumor
0.3
955
Tumor
0.3
284
Normal
0.2
114
Normal
0.2
516
Normal
0.2
136
Normal
0.2
472
Normal
0.2
172
Normal
0.2
474
Normal
0.2
662
Normal
0.2
396
Normal
0.2
981
Tumor
0.2
481
Tumor
0.2
918
Normal
0.2
1042
Normal
0.2
976
Normal
0.2
162
Normal
0.2
392
Normal
0.2
261
Tumor
0.2
1043
Tumor
0.2
446
Normal
0.2
222
Normal
0.2
695
Tumor
0.2
384
Normal
0.2
978
Normal
0.2
492
Normal
0.2
666
Normal
0.2
224
Normal
0.2
428
Normal
0.2
218
Normal
0.2
745
Tumor
0.2
362
Normal
0.2
498
Normal
0.1
536
Normal
0.1
351
Tumor
0.1
786
Normal
0.1
391
Tumor
0.1
262
Normal
0.1
138
Normal
0.1
354
Normal
0.1
312
Normal
0.1
915
Tumor
0.1
394
Normal
0.1
327
Tumor
0.1
113
Tumor
0.1
432
Normal
0.1
126
Normal
0.1
146
Normal
0.1
916
Normal
0.0
272
Normal
0.0
386
Normal
0.0
937
Tumor
0.0
851
Tumor
0.0
713
Tumor
0.0
434
Normal
0.0
478
Normal
0.0
857
Tumor
0.0
188
Normal
-0.1
553
Tumor
-0.1
911
Tumor
-0.1
415
Tumor
-0.1
921
Tumor
-0.1
741
Tumor
-0.1
413
Tumor
-0.2
444
Normal
-0.2
268
Normal
-0.2
223
Tumor
-0.2
1021
Tumor
-0.2
465
Tumor
-0.2
195
Tumor
-0.3
877
Tumor
-0.3
755
Tumor
-0.3
447
Tumor
-0.3
523
Tumor
-0.3
517
Tumor
-0.3
145
Tumor
-0.3
217
Tumor
-0.3
881
Tumor
-0.3
192
Normal
-0.3
1027
Tumor
-0.3
191
Tumor
-0.3
815
Tumor
-0.3
635
Tumor
-0.3
983
Tumor
-0.3
1031
Tumor
-0.3
977
Tumor
-0.3
861
Tumor
-0.4
967
Tumor
-0.4
814
Normal
-0.4
491
Tumor
-0.4
477
Tumor
-0.4
131
Tumor
-0.4
617
Tumor
-0.4
975
Tumor
-0.4
535
Tumor
-0.4
393
Tumor
-0.4
411
Tumor
-0.4
641
Tumor
-0.4
341
Tumor
-0.4
873
Tumor
-0.4
387
Tumor
-0.4
951
Tumor
-0.4
367
Tumor
-0.4
724
Normal
-0.4
331
Tumor
-0.5
467
Tumor
-0.5
615
Tumor
-0.5
431
Tumor
-0.5
743
Tumor
-0.5
943
Tumor
-0.5
271
Tumor
-0.5
147
Tumor
-0.5
493
Tumor
-0.5
355
Tumor
-0.5
527
Tumor
-0.5
112
Tumor
-0.5
923
Tumor
-0.5
661
Tumor
-0.5
1045
Tumor
-0.5
125
Tumor
-0.5
721
Tumor
-0.5
473
Tumor
-0.5
785
Tumor
-0.5
257
Tumor
-0.5
715
Tumor
-0.5
813
Tumor
-0.5
513
Tumor
-0.6
697
Tumor
-0.6
867
Tumor
-0.6
497
Tumor
-0.6
917
Tumor
-0.6
1025
Tumor
-0.6
665
Tumor
-0.6
421
Tumor
-0.6
425
Tumor
-0.6
557
Tumor
-0.6
883
Tumor
-0.6
533
Tumor
-0.6
963
Tumor
-0.6
817
Tumor
-0.6
231
Tumor
-0.6
913
Tumor
-0.6
953
Tumor
-0.7
361
Tumor
-0.7
221
Tumor
-0.7
563
Tumor
-0.7
483
Tumor
-0.7
423
Tumor
-0.7
823
Tumor
-0.7
1013
Tumor
-0.7
213
Tumor
-0.7
925
Tumor
-0.7
267
Tumor
-0.7
965
Tumor
-0.7
571
Tumor
-0.7
737
Tumor
-0.7
647
Tumor
-0.7
461
Tumor
-0.8
671
Tumor
-0.8
957
Tumor
-0.8
277
Tumor
-0.8
353
Tumor
-0.8
463
Tumor
-0.8
297
Tumor
-0.8
451
Tumor
-0.8
171
Tumor
-0.8
127
Tumor
-0.8
187
Tumor
-0.8
395
Tumor
-0.8
285
Tumor
-0.9
627
Tumor
-0.9
137
Tumor
-0.9
185
Tumor
-0.9
1015
Tumor
-0.9
343
Tumor
-0.9
567
Tumor
-0.9
357
Tumor
-0.9
471
Tumor
-0.9
455
Tumor
-0.9
427
Tumor
-0.9
385
Tumor
-0.9
537
Tumor
-0.9
433
Tumor
-0.9
135
Tumor
-1.0
525
Tumor
-1.0
123
Tumor
-1.0
487
Tumor
-1.0
383
Tumor
-1.0
161
Tumor
-1.0
1041
Tumor
-1.1
313
Tumor
-1.1
365
Tumor
-1.1
863
Tumor
-1.1
445
Tumor
-1.1
515
Tumor
-1.1
283
Tumor
-1.1
573
Tumor
-1.1
311
Tumor
-1.1
545
Tumor
-1.2
375
Tumor
-1.2
865
Tumor
-1.2
443
Tumor
-1.2
141
Tumor
-1.2
211
Tumor
-1.2
777
Tumor
-1.3
663
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.