MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA Brain:19.3 nTPM
GTEx:27.9 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:184.9 nTPM
Allen mouse:9.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2019 Male, age 18, unknown 16.7
2828 Female, age 72, unknown 15.8
1870 Female, age 42, unknown 14.7
1833 Male, age 53, unknown 14.4
2586 Male, age 75, left hemisphere 14.3
2219 Male, age 76, both hemispheres 14.2
2411 Female, age 72, unknown 13.7
1827 Male, age 72, unknown 12.9
1830 Male, age 51, unknown 12.6
2666 Male, age 74, left hemisphere 12.5
Dorsal raphe nucleus
nTPM: 17.9
2298 Female, age 72, unknown 22.2
2047 Male, age 72, unknown 19.7
2016 Female, age 72, unknown 17.2
1828 Male, age 53, unknown 16.6
2750 Male, age 76, both hemispheres 13.8
Inferior colliculus
nTPM: 19.3
1848 Female, age 42, unknown 20.5
2097 Female, age 72, unknown 20.4
1890 Male, age 53, unknown 19.6
2849 Male, age 72, unknown 16.8
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 16.1
1947 Male, age 18, unknown 17.6
2502 Female, age 75, unknown 16.5
1795 Male, age 51, unknown 14.1
Periaquaductal grey, dorsal
nTPM: 15.3
1840 Male, age 53, unknown 18.5
2464 Female, age 72, unknown 15.3
2850 Male, age 76, both hemispheres 14.3
1831 Male, age 72, unknown 13.3
Periaquaductal grey, lateral
nTPM: 14.5
2272 Male, age 74, both hemispheres 19.8
2140 Male, age 76, both hemispheres 12.0
2053 Male, age 18, unknown 11.8
Pretectal area
nTPM: 15.7
2667 Female, age 75, unknown 18.6
1817 Female, age 42, unknown 18.4
1944 Female, age 72, unknown 18.2
2224 Female, age 72, unknown 17.9
2273 Male, age 74, both hemispheres 17.5
1816 Male, age 51, unknown 16.8
2007 Male, age 72, unknown 14.7
1815 Male, age 53, unknown 14.6
2825 Male, age 18, unknown 13.9
2316 Male, age 76, right hemisphere 12.4
2407 Male, age 75, both hemispheres 9.4
Red nucleus
nTPM: 15.6
1821 Female, age 72, unknown 21.3
2503 Female, age 72, unknown 18.5
1954 Female, age 42, unknown 17.4
2725 Female, age 75, unknown 16.6
1865 Male, age 51, unknown 15.9
2785 Male, age 18, unknown 15.9
2823 Male, age 76, right hemisphere 15.3
2769 Male, age 72, unknown 15.2
2227 Male, age 72, unknown 14.3
1904 Male, age 53, unknown 14.1
2588 Male, age 74, left hemisphere 12.4
2584 Male, age 75, left hemisphere 10.1
Substantia nigra
nTPM: 18.4
2241 Male, age 72, unknown 26.1
1916 Female, age 42, unknown 24.2
1851 Male, age 51, unknown 22.1
1889 Female, age 72, unknown 20.4
2699 Male, age 18, unknown 20.3
1941 Male, age 53, unknown 16.9
2409 Female, age 72, unknown 15.1
2665 Male, age 74, both hemispheres 13.4
2590 Female, age 75, unknown 13.2
2583 Male, age 75, right hemisphere 12.1
Superior colliculus
nTPM: 14.3
2087 Female, age 72, unknown 16.5
2587 Male, age 74, left hemisphere 16.2
1796 Male, age 53, unknown 16.1
1895 Male, age 76, right hemisphere 14.7
2668 Female, age 75, unknown 14.2
1995 Male, age 72, unknown 14.1
1839 Male, age 51, unknown 13.8
1913 Female, age 42, unknown 13.1
2261 Male, age 18, unknown 12.2
2664 Male, age 75, both hemispheres 11.7
Ventral tegmental area
nTPM: 16.4
1915 Female, age 42, unknown 19.5
2410 Female, age 72, unknown 18.6
2218 Male, age 76, both hemispheres 16.1
1942 Male, age 51, unknown 15.0
2021 Male, age 53, unknown 14.9
2223 Female, age 72, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.9
Samples: 139

Max nTPM: 65.5
Min nTPM: 12.3
Std nTPM: 9.4
Median nTPM: 26.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 65.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 62.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 56.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 50.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 47.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 41.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 41.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.7
FF:10158-103A5 76 years, female 19.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 40.2
Sample A Female 55.0
Sample B Female 43.5
Sample C Male 40.2
Sample D Male 40.2
Midbrain
nTPM: 43.3
Samples: 4

Max nTPM: 66.3
Min nTPM: 27.1
Sample A Female 66.3
Sample B Female 43.8
Sample C Male 36.1
Sample D Male 27.1
Periaqueductal gray
nTPM: 37.7
Samples: 3

Max nTPM: 42.5
Min nTPM: 34.7
Sample B Female 35.8
Sample C Male 42.5
Sample D Male 34.7
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 48.5
Min nTPM: 37.1
Sample A Female 48.5
Sample B Female 43.7
Sample C Male 37.1
Sample D Male 39.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 184.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 185.0
Samples: 4

Max nTPM: 193.9
Min nTPM: 173.4
Sample A Male 191.0
Sample B Male 193.9
Sample C Female 173.4
Sample D Female 181.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.2
74800914 Antisense, RP_060315_02_A06, Mouse strain C57BL/6J (56 days, male) 13.4
532592 Antisense, RP_040810_02_D03, Mouse strain C57BL/6J (56 days, male) 4.9

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