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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HPS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HPS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
953
Tumor
1.6
132
Normal
1.6
343
Tumor
1.4
192
Normal
1.3
136
Normal
1.3
443
Tumor
1.2
863
Tumor
1.2
217
Tumor
1.1
351
Tumor
1.1
445
Tumor
1.1
358
Normal
1.1
146
Normal
1.0
433
Tumor
0.9
138
Normal
0.9
724
Normal
0.9
1027
Tumor
0.9
434
Normal
0.8
912
Normal
0.8
186
Normal
0.8
745
Tumor
0.8
313
Tumor
0.8
921
Tumor
0.7
1025
Tumor
0.7
387
Tumor
0.7
957
Tumor
0.7
342
Normal
0.7
354
Normal
0.7
951
Tumor
0.7
432
Normal
0.7
727
Tumor
0.7
353
Tumor
0.6
393
Tumor
0.6
722
Normal
0.6
352
Normal
0.6
257
Tumor
0.6
195
Tumor
0.6
388
Normal
0.6
211
Tumor
0.6
396
Normal
0.5
882
Normal
0.5
142
Normal
0.5
391
Tumor
0.5
473
Tumor
0.5
213
Tumor
0.5
884
Normal
0.5
357
Tumor
0.5
147
Tumor
0.5
148
Normal
0.5
435
Tumor
0.5
938
Normal
0.5
1046
Normal
0.5
744
Normal
0.5
446
Normal
0.5
385
Tumor
0.5
537
Tumor
0.4
344
Normal
0.4
925
Tumor
0.4
341
Tumor
0.4
914
Normal
0.4
162
Normal
0.4
172
Normal
0.4
188
Normal
0.4
723
Tumor
0.4
394
Normal
0.4
915
Tumor
0.4
868
Normal
0.4
392
Normal
0.4
331
Tumor
0.4
536
Normal
0.4
1045
Tumor
0.3
567
Tumor
0.3
937
Tumor
0.3
533
Tumor
0.3
386
Normal
0.3
231
Tumor
0.3
222
Normal
0.3
196
Normal
0.3
535
Tumor
0.3
923
Tumor
0.3
223
Tumor
0.3
1044
Normal
0.3
952
Normal
0.3
214
Normal
0.3
924
Normal
0.3
743
Tumor
0.3
395
Tumor
0.3
571
Tumor
0.3
491
Tumor
0.3
728
Normal
0.2
862
Normal
0.2
482
Normal
0.2
956
Normal
0.2
698
Normal
0.2
878
Normal
0.2
477
Tumor
0.2
574
Normal
0.2
472
Normal
0.2
135
Tumor
0.2
448
Normal
0.2
742
Normal
0.2
721
Tumor
0.2
137
Tumor
0.2
462
Normal
0.2
187
Tumor
0.2
866
Normal
0.2
564
Normal
0.2
738
Normal
0.2
672
Normal
0.2
1041
Tumor
0.2
447
Tumor
0.2
695
Tumor
0.2
954
Normal
0.2
553
Tumor
0.2
666
Normal
0.2
218
Normal
0.2
662
Normal
0.2
191
Tumor
0.2
922
Normal
0.1
355
Tumor
0.1
944
Normal
0.1
873
Tumor
0.1
696
Normal
0.1
283
Tumor
0.1
498
Normal
0.1
975
Tumor
0.1
916
Normal
0.1
874
Normal
0.1
185
Tumor
0.1
474
Normal
0.1
713
Tumor
0.1
1042
Normal
0.1
756
Normal
0.1
741
Tumor
0.1
478
Normal
0.1
286
Normal
0.1
471
Tumor
0.1
1026
Normal
0.1
964
Normal
0.1
145
Tumor
0.1
554
Normal
0.1
714
Normal
0.1
1021
Tumor
0.1
277
Tumor
0.1
786
Normal
0.1
363
Tumor
0.1
746
Normal
0.1
911
Tumor
0.1
864
Normal
0.1
976
Normal
0.1
572
Normal
0.1
1031
Tumor
0.0
685
Tumor
0.0
436
Normal
0.0
648
Normal
0.0
697
Tumor
0.0
415
Tumor
0.0
481
Tumor
0.0
141
Tumor
0.0
327
Tumor
0.0
967
Tumor
0.0
278
Normal
0.0
171
Tumor
0.0
686
Normal
0.0
492
Normal
0.0
563
Tumor
0.0
1032
Normal
0.0
573
Tumor
0.0
212
Normal
0.0
131
Tumor
0.0
965
Tumor
0.0
461
Tumor
0.0
958
Normal
0.0
411
Tumor
0.0
161
Tumor
0.0
224
Normal
0.0
328
Normal
0.0
364
Normal
0.0
311
Tumor
0.0
963
Tumor
0.0
778
Normal
0.0
755
Tumor
-0.1
416
Normal
-0.1
271
Tumor
-0.1
647
Tumor
-0.1
716
Normal
-0.1
1043
Tumor
-0.1
777
Tumor
-0.1
483
Tumor
-0.1
557
Tumor
-0.1
664
Normal
-0.1
546
Normal
-0.1
412
Normal
-0.1
497
Tumor
-0.1
917
Tumor
-0.1
558
Normal
-0.1
955
Tumor
-0.1
444
Normal
-0.1
966
Normal
-0.1
431
Tumor
-0.1
221
Tumor
-0.1
568
Normal
-0.1
228
Normal
-0.1
493
Tumor
-0.1
665
Tumor
-0.1
867
Tumor
-0.1
538
Normal
-0.1
663
Tumor
-0.1
926
Normal
-0.1
488
Normal
-0.1
918
Normal
-0.1
883
Tumor
-0.2
913
Tumor
-0.2
314
Normal
-0.2
661
Tumor
-0.2
943
Tumor
-0.2
528
Normal
-0.2
487
Tumor
-0.2
298
Normal
-0.2
267
Tumor
-0.2
284
Normal
-0.2
534
Normal
-0.2
261
Tumor
-0.2
1022
Normal
-0.2
527
Tumor
-0.2
494
Normal
-0.2
484
Normal
-0.2
968
Normal
-0.2
671
Tumor
-0.2
785
Tumor
-0.2
356
Normal
-0.2
865
Tumor
-0.3
814
Normal
-0.3
232
Normal
-0.3
861
Tumor
-0.3
881
Tumor
-0.3
312
Normal
-0.3
715
Tumor
-0.3
737
Tumor
-0.3
297
Tumor
-0.4
332
Normal
-0.4
272
Normal
-0.4
285
Tumor
-0.4
1028
Normal
-0.5
545
Tumor
-0.5
227
Tumor
-0.5
258
Normal
-0.5
877
Tumor
-0.6
262
Normal
-0.6
268
Normal
-0.7
813
Tumor
-0.7
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
