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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFAND5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1141.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
444.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
424.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
397.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
384.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
378.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
355.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
350.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
333.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
300.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
275.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
271.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
266.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
248.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
245.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
240.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
233.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
233.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
222.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
211.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
207.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
206.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
201.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
195.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
187.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
178.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
175.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
173.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
165.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
163.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
160.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
155.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
154.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
154.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
146.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
146.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
145.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
144.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
140.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
137.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
137.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
136.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
134.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
132.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
132.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
129.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
128.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
125.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
123.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
123.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
123.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
123.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
121.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
120.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
120.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
120.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
119.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
119.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
119.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
119.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
117.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
117.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
111.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
106.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
106.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
105.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
105.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
105.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
104.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
103.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
103.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
101.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
100.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
99.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
98.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
96.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
95.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
95.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
94.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
93.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
93.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
93.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
91.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
91.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
91.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
90.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
89.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
88.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
84.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
84.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
84.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
83.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
82.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
81.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
81.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
79.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
78.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
78.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
77.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
77.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
77.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
76.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
75.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
74.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
71.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
71.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
70.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
70.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
70.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
70.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
69.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
69.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
68.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
68.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
67.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
67.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
66.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
66.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
66.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
65.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
65.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
65.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
64.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
64.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
63.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
63.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
62.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
62.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
62.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
62.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
59.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
59.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
59.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
58.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
57.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
57.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
56.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
56.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
55.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
55.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
54.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
53.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
53.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
53.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
52.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
52.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
51.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
50.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
49.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
49.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
47.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
46.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
46.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
46.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
44.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
44.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
42.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
42.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
40.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
39.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
32.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
32.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
26.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
24.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZFAND5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.0
Number of samples
231
Samples
Sample
Description
TPM
DO50817
0 years, male, NA, stage:2, alive, 390 days
671.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
584.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
445.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
405.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
306.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
286.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
242.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
204.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
189.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
173.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
159.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
157.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
134.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
109.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
103.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
95.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
86.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
84.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
82.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
77.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
74.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
74.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
74.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
72.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
69.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
66.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
64.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
63.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
60.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
57.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
55.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
55.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
54.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
54.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
52.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
51.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
47.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
46.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
45.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
44.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
43.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
41.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
40.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
39.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
38.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
34.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
33.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
30.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
481
Tumor
1.5
1041
Tumor
1.4
427
Tumor
1.3
493
Tumor
1.1
823
Tumor
1.1
423
Tumor
1.1
573
Tumor
1.1
1025
Tumor
1.0
428
Normal
0.9
358
Normal
0.9
937
Tumor
0.9
497
Tumor
0.9
533
Tumor
0.9
537
Tumor
0.9
851
Tumor
0.9
661
Tumor
0.8
525
Tumor
0.8
967
Tumor
0.8
464
Normal
0.8
431
Tumor
0.8
816
Normal
0.7
424
Normal
0.7
663
Tumor
0.7
824
Normal
0.7
498
Normal
0.7
451
Tumor
0.7
482
Normal
0.6
456
Normal
0.6
468
Normal
0.6
545
Tumor
0.6
968
Normal
0.6
411
Tumor
0.6
954
Normal
0.6
815
Tumor
0.6
395
Tumor
0.6
211
Tumor
0.5
965
Tumor
0.5
557
Tumor
0.5
465
Tumor
0.5
921
Tumor
0.5
534
Normal
0.5
944
Normal
0.5
353
Tumor
0.5
716
Normal
0.5
721
Tumor
0.5
267
Tumor
0.5
952
Normal
0.5
466
Normal
0.4
1031
Tumor
0.4
414
Normal
0.4
187
Tumor
0.4
553
Tumor
0.4
126
Normal
0.4
1028
Normal
0.4
647
Tumor
0.4
785
Tumor
0.4
331
Tumor
0.3
286
Normal
0.3
714
Normal
0.3
955
Tumor
0.3
445
Tumor
0.3
422
Normal
0.3
938
Normal
0.3
212
Normal
0.3
123
Tumor
0.3
817
Tumor
0.3
524
Normal
0.3
352
Normal
0.3
366
Normal
0.3
976
Normal
0.3
297
Tumor
0.3
715
Tumor
0.2
354
Normal
0.2
355
Tumor
0.2
868
Normal
0.2
277
Tumor
0.2
415
Tumor
0.2
384
Normal
0.2
463
Tumor
0.2
375
Tumor
0.2
383
Tumor
0.2
327
Tumor
0.2
862
Normal
0.2
722
Normal
0.2
494
Normal
0.2
492
Normal
0.2
443
Tumor
0.2
951
Tumor
0.2
367
Tumor
0.2
344
Normal
0.2
953
Tumor
0.2
628
Normal
0.2
452
Normal
0.2
963
Tumor
0.2
228
Normal
0.2
113
Tumor
0.2
455
Tumor
0.2
365
Tumor
0.2
227
Tumor
0.2
943
Tumor
0.2
515
Tumor
0.2
433
Tumor
0.2
957
Tumor
0.2
513
Tumor
0.1
285
Tumor
0.1
376
Normal
0.1
313
Tumor
0.1
356
Normal
0.1
232
Normal
0.1
446
Normal
0.1
864
Normal
0.1
224
Normal
0.1
473
Tumor
0.1
368
Normal
0.1
956
Normal
0.1
393
Tumor
0.1
554
Normal
0.1
523
Tumor
0.1
516
Normal
0.1
272
Normal
0.1
435
Tumor
0.1
311
Tumor
0.1
617
Tumor
0.1
671
Tumor
0.0
342
Normal
0.0
284
Normal
0.0
436
Normal
0.0
361
Tumor
0.0
923
Tumor
0.0
618
Normal
0.0
426
Normal
0.0
477
Tumor
0.0
357
Tumor
0.0
728
Normal
0.0
478
Normal
0.0
362
Normal
0.0
434
Normal
0.0
975
Tumor
0.0
857
Tumor
0.0
467
Tumor
0.0
124
Normal
0.0
364
Normal
0.0
665
Tumor
0.0
128
Normal
0.0
363
Tumor
0.0
283
Tumor
0.0
867
Tumor
-0.1
432
Normal
-0.1
1032
Normal
-0.1
261
Tumor
-0.1
915
Tumor
-0.1
1042
Normal
-0.1
858
Normal
-0.1
416
Normal
-0.1
258
Normal
-0.1
527
Tumor
-0.1
666
Normal
-0.1
863
Tumor
-0.1
713
Tumor
-0.1
874
Normal
-0.1
648
Normal
-0.1
664
Normal
-0.1
777
Tumor
-0.1
641
Tumor
-0.1
298
Normal
-0.1
538
Normal
-0.1
472
Normal
-0.1
852
Normal
-0.2
413
Tumor
-0.2
394
Normal
-0.2
112
Tumor
-0.2
642
Normal
-0.2
627
Tumor
-0.2
444
Normal
-0.2
223
Tumor
-0.2
518
Normal
-0.2
412
Normal
-0.2
966
Normal
-0.2
487
Tumor
-0.2
328
Normal
-0.2
925
Tumor
-0.2
461
Tumor
-0.2
724
Normal
-0.2
672
Normal
-0.2
922
Normal
-0.2
528
Normal
-0.2
866
Normal
-0.2
343
Tumor
-0.2
865
Tumor
-0.2
484
Normal
-0.3
341
Tumor
-0.3
662
Normal
-0.3
425
Tumor
-0.3
917
Tumor
-0.3
918
Normal
-0.3
546
Normal
-0.3
635
Tumor
-0.3
421
Tumor
-0.3
474
Normal
-0.3
231
Tumor
-0.3
491
Tumor
-0.3
114
Normal
-0.3
685
Tumor
-0.3
818
Normal
-0.3
127
Tumor
-0.3
391
Tumor
-0.3
746
Normal
-0.3
964
Normal
-0.3
756
Normal
-0.3
958
Normal
-0.3
471
Tumor
-0.3
924
Normal
-0.3
312
Normal
-0.3
488
Normal
-0.3
262
Normal
-0.3
278
Normal
-0.3
526
Normal
-0.3
696
Normal
-0.3
615
Tumor
-0.4
636
Normal
-0.4
786
Normal
-0.4
755
Tumor
-0.4
814
Normal
-0.4
574
Normal
-0.4
111
Normal
-0.4
514
Normal
-0.4
861
Tumor
-0.4
778
Normal
-0.4
268
Normal
-0.4
1022
Normal
-0.4
1026
Normal
-0.4
926
Normal
-0.4
1021
Tumor
-0.4
125
Tumor
-0.4
462
Normal
-0.4
271
Tumor
-0.5
567
Tumor
-0.5
385
Tumor
-0.5
686
Normal
-0.5
332
Normal
-0.5
568
Normal
-0.5
572
Normal
-0.5
745
Tumor
-0.5
148
Normal
-0.5
558
Normal
-0.6
517
Tumor
-0.6
873
Tumor
-0.6
188
Normal
-0.6
916
Normal
-0.6
813
Tumor
-0.6
257
Tumor
-0.6
616
Normal
-0.6
564
Normal
-0.6
483
Tumor
-0.7
351
Tumor
-0.7
396
Normal
-0.7
147
Tumor
-0.7
563
Tumor
-0.7
161
Tumor
-0.8
392
Normal
-0.9
185
Tumor
-0.9
172
Normal
-0.9
387
Tumor
-0.9
314
Normal
-0.9
388
Normal
-1.0
1027
Tumor
-1.0
695
Tumor
-1.0
162
Normal
-1.0
186
Normal
-1.1
571
Tumor
-1.1
386
Normal
-1.2
727
Tumor
-1.3
742
Normal
-1.5
744
Normal
-1.6
171
Tumor
-1.8
723
Tumor
-1.9
738
Normal
-2.0
741
Tumor
-2.1
737
Tumor
-2.1
743
Tumor
-2.8
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
