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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
2.0
616
Normal
1.1
523
Tumor
1.0
615
Tumor
1.0
564
Normal
1.0
574
Normal
1.0
955
Tumor
1.0
388
Normal
0.9
272
Normal
0.9
755
Tumor
0.9
915
Tumor
0.9
911
Tumor
0.9
232
Normal
0.9
567
Tumor
0.9
392
Normal
0.8
1041
Tumor
0.8
617
Tumor
0.8
258
Normal
0.8
195
Tumor
0.8
1015
Tumor
0.8
477
Tumor
0.7
628
Normal
0.7
557
Tumor
0.7
568
Normal
0.7
262
Normal
0.7
816
Normal
0.7
913
Tumor
0.7
268
Normal
0.7
536
Normal
0.6
715
Tumor
0.6
481
Tumor
0.6
635
Tumor
0.6
395
Tumor
0.6
572
Normal
0.6
742
Normal
0.6
738
Normal
0.6
642
Normal
0.6
558
Normal
0.6
533
Tumor
0.6
852
Normal
0.6
514
Normal
0.6
636
Normal
0.6
721
Tumor
0.6
777
Tumor
0.5
148
Normal
0.5
448
Normal
0.5
136
Normal
0.5
213
Tumor
0.5
112
Tumor
0.5
741
Tumor
0.5
187
Tumor
0.5
916
Normal
0.5
863
Tumor
0.5
478
Normal
0.5
188
Normal
0.5
728
Normal
0.5
978
Normal
0.5
425
Tumor
0.5
386
Normal
0.5
958
Normal
0.5
396
Normal
0.5
723
Tumor
0.5
328
Normal
0.5
861
Tumor
0.5
422
Normal
0.5
362
Normal
0.5
912
Normal
0.5
387
Tumor
0.5
114
Normal
0.5
186
Normal
0.5
1044
Normal
0.5
426
Normal
0.4
394
Normal
0.4
393
Tumor
0.4
824
Normal
0.4
228
Normal
0.4
431
Tumor
0.4
171
Tumor
0.4
698
Normal
0.4
976
Normal
0.4
132
Normal
0.4
137
Tumor
0.4
224
Normal
0.4
267
Tumor
0.4
494
Normal
0.4
696
Normal
0.4
857
Tumor
0.4
817
Tumor
0.4
162
Normal
0.4
1014
Normal
0.4
524
Normal
0.4
365
Tumor
0.4
618
Normal
0.4
956
Normal
0.4
128
Normal
0.4
918
Normal
0.4
982
Normal
0.4
627
Tumor
0.4
926
Normal
0.4
722
Normal
0.4
212
Normal
0.4
518
Normal
0.4
414
Normal
0.4
823
Tumor
0.4
878
Normal
0.4
192
Normal
0.4
416
Normal
0.4
498
Normal
0.4
867
Tumor
0.4
745
Tumor
0.4
138
Normal
0.3
217
Tumor
0.3
286
Normal
0.3
573
Tumor
0.3
966
Normal
0.3
364
Normal
0.3
744
Normal
0.3
981
Tumor
0.3
977
Tumor
0.3
172
Normal
0.3
384
Normal
0.3
271
Tumor
0.3
113
Tumor
0.3
474
Normal
0.3
714
Normal
0.3
1016
Normal
0.3
954
Normal
0.3
428
Normal
0.3
452
Normal
0.3
223
Tumor
0.3
423
Tumor
0.3
526
Normal
0.3
914
Normal
0.3
864
Normal
0.3
716
Normal
0.3
484
Normal
0.3
222
Normal
0.3
818
Normal
0.3
737
Tumor
0.3
1026
Normal
0.3
424
Normal
0.3
968
Normal
0.3
648
Normal
0.3
356
Normal
0.3
546
Normal
0.3
126
Normal
0.3
191
Tumor
0.3
664
Normal
0.3
921
Tumor
0.3
465
Tumor
0.3
1042
Normal
0.3
111
Normal
0.3
937
Tumor
0.3
924
Normal
0.3
1046
Normal
0.3
984
Normal
0.3
1028
Normal
0.3
444
Normal
0.3
472
Normal
0.3
366
Normal
0.3
145
Tumor
0.3
462
Normal
0.2
884
Normal
0.2
415
Tumor
0.2
214
Normal
0.2
554
Normal
0.2
938
Normal
0.2
451
Tumor
0.2
433
Tumor
0.2
662
Normal
0.2
488
Normal
0.2
412
Normal
0.2
368
Normal
0.2
436
Normal
0.2
376
Normal
0.2
746
Normal
0.2
943
Tumor
0.2
261
Tumor
0.2
125
Tumor
0.2
641
Tumor
0.2
196
Normal
0.2
358
Normal
0.2
445
Tumor
0.2
516
Normal
0.2
446
Normal
0.2
873
Tumor
0.2
482
Normal
0.2
534
Normal
0.2
964
Normal
0.2
314
Normal
0.2
685
Tumor
0.2
528
Normal
0.2
1045
Tumor
0.2
142
Normal
0.2
538
Normal
0.2
952
Normal
0.2
413
Tumor
0.2
1032
Normal
0.2
515
Tumor
0.2
944
Normal
0.2
786
Normal
0.2
312
Normal
0.1
666
Normal
0.1
858
Normal
0.1
146
Normal
0.1
814
Normal
0.1
756
Normal
0.1
963
Tumor
0.1
874
Normal
0.1
218
Normal
0.1
161
Tumor
0.1
862
Normal
0.1
922
Normal
0.1
492
Normal
0.1
221
Tumor
0.1
851
Tumor
0.1
343
Tumor
0.1
123
Tumor
0.1
434
Normal
0.1
672
Normal
0.1
385
Tumor
0.1
493
Tumor
0.1
231
Tumor
0.1
785
Tumor
0.1
257
Tumor
0.1
468
Normal
0.1
443
Tumor
0.1
327
Tumor
0.1
383
Tumor
0.1
925
Tumor
0.1
278
Normal
0.1
127
Tumor
0.1
124
Normal
0.1
354
Normal
0.0
466
Normal
0.0
135
Tumor
0.0
525
Tumor
0.0
1027
Tumor
0.0
535
Tumor
0.0
456
Normal
0.0
471
Tumor
0.0
391
Tumor
0.0
1022
Normal
0.0
545
Tumor
0.0
131
Tumor
0.0
455
Tumor
0.0
285
Tumor
0.0
868
Normal
0.0
975
Tumor
0.0
141
Tumor
0.0
344
Normal
0.0
563
Tumor
0.0
353
Tumor
0.0
447
Tumor
0.0
352
Normal
0.0
866
Normal
0.0
513
Tumor
0.0
483
Tumor
0.0
882
Normal
-0.1
461
Tumor
-0.1
778
Normal
-0.1
421
Tumor
-0.1
464
Normal
-0.1
813
Tumor
-0.1
298
Normal
-0.1
713
Tumor
-0.1
917
Tumor
-0.1
432
Normal
-0.1
332
Normal
-0.1
473
Tumor
-0.1
284
Normal
-0.1
363
Tumor
-0.1
497
Tumor
-0.1
865
Tumor
-0.1
427
Tumor
-0.1
147
Tumor
-0.1
527
Tumor
-0.2
361
Tumor
-0.2
537
Tumor
-0.2
355
Tumor
-0.2
1043
Tumor
-0.2
883
Tumor
-0.2
342
Normal
-0.2
491
Tumor
-0.3
553
Tumor
-0.3
923
Tumor
-0.3
357
Tumor
-0.3
743
Tumor
-0.3
663
Tumor
-0.3
185
Tumor
-0.3
517
Tumor
-0.3
665
Tumor
-0.3
487
Tumor
-0.4
686
Normal
-0.4
671
Tumor
-0.4
1013
Tumor
-0.4
881
Tumor
-0.4
211
Tumor
-0.4
967
Tumor
-0.4
1025
Tumor
-0.4
957
Tumor
-0.4
1031
Tumor
-0.4
1021
Tumor
-0.4
467
Tumor
-0.4
983
Tumor
-0.5
297
Tumor
-0.5
815
Tumor
-0.5
647
Tumor
-0.5
375
Tumor
-0.5
695
Tumor
-0.5
953
Tumor
-0.5
724
Normal
-0.6
311
Tumor
-0.6
463
Tumor
-0.6
277
Tumor
-0.6
341
Tumor
-0.6
877
Tumor
-0.6
227
Tumor
-0.7
435
Tumor
-0.7
331
Tumor
-0.7
965
Tumor
-0.7
283
Tumor
-0.7
411
Tumor
-0.8
951
Tumor
-0.8
727
Tumor
-0.9
313
Tumor
-0.9
367
Tumor
-0.9
351
Tumor
-0.9
661
Tumor
-1.0
697
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
