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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABCA2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
94.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ABCA2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
0.8
343
Tumor
0.7
813
Tumor
0.7
567
Tumor
0.7
523
Tumor
0.6
1042
Normal
0.6
617
Tumor
0.6
573
Tumor
0.6
393
Tumor
0.6
874
Normal
0.5
627
Tumor
0.5
395
Tumor
0.5
285
Tumor
0.4
361
Tumor
0.4
738
Normal
0.4
161
Tumor
0.4
312
Normal
0.4
212
Normal
0.4
721
Tumor
0.4
515
Tumor
0.4
513
Tumor
0.4
533
Tumor
0.3
142
Normal
0.3
228
Normal
0.3
534
Normal
0.3
257
Tumor
0.3
866
Normal
0.3
188
Normal
0.3
284
Normal
0.3
313
Tumor
0.3
278
Normal
0.3
497
Tumor
0.3
864
Normal
0.3
868
Normal
0.3
697
Tumor
0.3
224
Normal
0.3
385
Tumor
0.3
138
Normal
0.3
136
Normal
0.3
967
Tumor
0.2
956
Normal
0.2
1014
Normal
0.2
314
Normal
0.2
785
Tumor
0.2
1022
Normal
0.2
433
Tumor
0.2
132
Normal
0.2
743
Tumor
0.2
428
Normal
0.2
478
Normal
0.2
777
Tumor
0.2
387
Tumor
0.2
365
Tumor
0.2
728
Normal
0.2
286
Normal
0.2
1032
Normal
0.2
616
Normal
0.2
786
Normal
0.2
435
Tumor
0.2
494
Normal
0.2
218
Normal
0.2
192
Normal
0.2
191
Tumor
0.2
952
Normal
0.2
527
Tumor
0.2
358
Normal
0.2
353
Tumor
0.2
963
Tumor
0.2
914
Normal
0.2
341
Tumor
0.2
964
Normal
0.2
698
Normal
0.2
456
Normal
0.2
298
Normal
0.2
114
Normal
0.2
222
Normal
0.2
965
Tumor
0.2
258
Normal
0.2
823
Tumor
0.2
628
Normal
0.2
272
Normal
0.2
1044
Normal
0.2
924
Normal
0.2
722
Normal
0.2
514
Normal
0.2
364
Normal
0.2
416
Normal
0.1
976
Normal
0.1
474
Normal
0.1
1046
Normal
0.1
815
Tumor
0.1
135
Tumor
0.1
546
Normal
0.1
926
Normal
0.1
862
Normal
0.1
741
Tumor
0.1
214
Normal
0.1
383
Tumor
0.1
356
Normal
0.1
223
Tumor
0.1
128
Normal
0.1
422
Normal
0.1
716
Normal
0.1
125
Tumor
0.1
262
Normal
0.1
424
Normal
0.1
715
Tumor
0.1
491
Tumor
0.1
487
Tumor
0.1
484
Normal
0.1
518
Normal
0.1
328
Normal
0.1
466
Normal
0.1
423
Tumor
0.1
1026
Normal
0.1
123
Tumor
0.1
426
Normal
0.1
564
Normal
0.1
686
Normal
0.1
714
Normal
0.1
141
Tumor
0.1
873
Tumor
0.1
918
Normal
0.1
232
Normal
0.1
911
Tumor
0.1
814
Normal
0.1
384
Normal
0.1
723
Tumor
0.1
462
Normal
0.1
327
Tumor
0.1
483
Tumor
0.1
461
Tumor
0.1
451
Tumor
0.1
958
Normal
0.1
742
Normal
0.1
642
Normal
0.1
196
Normal
0.1
111
Normal
0.1
618
Normal
0.1
572
Normal
0.1
574
Normal
0.1
412
Normal
0.1
746
Normal
0.1
445
Tumor
0.1
482
Normal
0.1
112
Tumor
0.1
145
Tumor
0.1
915
Tumor
0.1
1016
Normal
0.1
481
Tumor
0.1
516
Normal
0.1
816
Normal
0.1
351
Tumor
0.0
526
Normal
0.0
968
Normal
0.0
554
Normal
0.0
528
Normal
0.0
558
Normal
0.0
756
Normal
0.0
778
Normal
0.0
146
Normal
0.0
434
Normal
0.0
366
Normal
0.0
362
Normal
0.0
213
Tumor
0.0
713
Tumor
0.0
332
Normal
0.0
436
Normal
0.0
448
Normal
0.0
557
Tumor
0.0
186
Normal
0.0
524
Normal
0.0
432
Normal
0.0
852
Normal
0.0
267
Tumor
0.0
468
Normal
0.0
863
Tumor
0.0
696
Normal
0.0
414
Normal
0.0
354
Normal
0.0
492
Normal
0.0
975
Tumor
0.0
386
Normal
0.0
737
Tumor
0.0
472
Normal
0.0
148
Normal
0.0
755
Tumor
0.0
137
Tumor
0.0
984
Normal
0.0
922
Normal
0.0
517
Tumor
0.0
1041
Tumor
0.0
568
Normal
0.0
944
Normal
0.0
1021
Tumor
0.0
685
Tumor
0.0
916
Normal
0.0
217
Tumor
0.0
376
Normal
0.0
955
Tumor
0.0
981
Tumor
0.0
162
Normal
0.0
231
Tumor
0.0
431
Tumor
0.0
867
Tumor
0.0
488
Normal
0.0
954
Normal
0.0
261
Tumor
0.0
978
Normal
0.0
415
Tumor
0.0
818
Normal
0.0
127
Tumor
0.0
342
Normal
-0.1
883
Tumor
-0.1
195
Tumor
-0.1
446
Normal
-0.1
648
Normal
-0.1
861
Tumor
-0.1
851
Tumor
-0.1
982
Normal
-0.1
498
Normal
-0.1
878
Normal
-0.1
938
Normal
-0.1
966
Normal
-0.1
344
Normal
-0.1
357
Tumor
-0.1
824
Normal
-0.1
126
Normal
-0.1
172
Normal
-0.1
413
Tumor
-0.1
368
Normal
-0.1
268
Normal
-0.1
636
Normal
-0.1
187
Tumor
-0.1
817
Tumor
-0.1
724
Normal
-0.1
452
Normal
-0.1
535
Tumor
-0.1
647
Tumor
-0.1
411
Tumor
-0.1
464
Normal
-0.1
536
Normal
-0.1
447
Tumor
-0.1
882
Normal
-0.1
352
Normal
-0.1
923
Tumor
-0.1
388
Normal
-0.1
664
Normal
-0.1
185
Tumor
-0.1
858
Normal
-0.1
538
Normal
-0.1
571
Tumor
-0.1
465
Tumor
-0.2
147
Tumor
-0.2
913
Tumor
-0.2
745
Tumor
-0.2
277
Tumor
-0.2
865
Tumor
-0.2
953
Tumor
-0.2
525
Tumor
-0.2
661
Tumor
-0.2
396
Normal
-0.2
662
Normal
-0.2
977
Tumor
-0.2
615
Tumor
-0.2
355
Tumor
-0.2
943
Tumor
-0.2
124
Normal
-0.2
912
Normal
-0.2
444
Normal
-0.2
1043
Tumor
-0.2
283
Tumor
-0.2
227
Tumor
-0.2
297
Tumor
-0.2
857
Tumor
-0.2
394
Normal
-0.2
493
Tumor
-0.2
421
Tumor
-0.2
695
Tumor
-0.2
727
Tumor
-0.2
937
Tumor
-0.2
884
Normal
-0.2
925
Tumor
-0.3
957
Tumor
-0.3
113
Tumor
-0.3
744
Normal
-0.3
463
Tumor
-0.3
443
Tumor
-0.3
363
Tumor
-0.3
671
Tumor
-0.3
1028
Normal
-0.3
473
Tumor
-0.3
375
Tumor
-0.3
455
Tumor
-0.3
467
Tumor
-0.3
1027
Tumor
-0.3
881
Tumor
-0.3
672
Normal
-0.3
391
Tumor
-0.3
951
Tumor
-0.3
545
Tumor
-0.3
425
Tumor
-0.3
211
Tumor
-0.4
311
Tumor
-0.4
1015
Tumor
-0.4
221
Tumor
-0.4
1045
Tumor
-0.4
983
Tumor
-0.4
921
Tumor
-0.4
563
Tumor
-0.4
171
Tumor
-0.4
392
Normal
-0.4
665
Tumor
-0.4
663
Tumor
-0.4
666
Normal
-0.4
477
Tumor
-0.4
367
Tumor
-0.4
917
Tumor
-0.5
635
Tumor
-0.5
331
Tumor
-0.5
641
Tumor
-0.5
1013
Tumor
-0.6
271
Tumor
-0.6
537
Tumor
-0.7
131
Tumor
-0.7
877
Tumor
-0.7
1031
Tumor
-0.7
471
Tumor
-0.7
553
Tumor
-0.7
1025
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
