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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EDF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
566.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1835.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1425.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1411.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1337.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1315.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1235.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1211.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1186.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1185.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1125.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1116.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1098.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1086.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1061.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1019.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1016.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1015.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1013.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1012.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1012.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1009.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1006.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
993.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
989.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
972.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
963.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
930.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
928.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
923.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
913.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
909.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
904.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
891.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
875.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
863.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
862.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
860.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
854.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
852.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
829.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
828.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
822.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
819.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
817.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
813.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
813.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
812.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
810.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
803.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
800.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
796.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
795.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
794.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
793.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
791.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
788.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
783.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
783.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
782.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
779.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
770.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
762.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
754.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
754.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
752.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
751.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
749.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
748.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
746.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
738.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
738.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
736.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
736.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
734.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
723.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
716.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
713.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
713.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
710.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
706.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
701.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
697.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
697.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
691.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
681.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
681.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
678.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
678.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
677.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
675.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
675.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
670.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
669.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
668.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
668.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
666.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
664.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
660.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
658.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
657.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
654.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
654.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
652.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
651.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
651.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
650.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
646.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
644.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
643.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
642.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
640.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
627.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
626.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
623.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
623.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
622.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
621.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
619.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
618.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
617.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
614.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
612.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
609.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
606.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
606.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
603.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
601.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
597.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
594.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
592.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
589.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
587.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
583.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
578.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
576.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
572.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
571.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
571.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
571.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
566.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
565.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
565.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
560.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
560.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
558.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
557.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
556.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
556.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
550.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
549.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
548.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
548.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
547.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
546.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
545.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
544.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
543.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
543.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
542.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
537.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
534.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
532.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
528.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
527.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
524.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
523.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
522.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
522.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
519.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
519.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
519.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
515.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
515.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
513.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
512.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
511.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
511.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
511.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
510.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
510.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
509.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
509.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
508.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
507.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
507.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
505.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
503.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
503.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
502.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
502.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
500.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
498.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
498.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
496.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
492.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
490.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
490.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
490.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
488.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
487.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
486.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
486.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
486.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
485.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
484.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
479.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
478.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
474.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
472.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
471.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
468.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
468.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
467.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
466.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
466.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
466.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
464.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
464.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
462.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
461.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
460.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
459.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
459.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
458.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
455.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
455.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
454.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
454.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
454.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
453.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
453.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
450.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
450.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
450.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
449.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
448.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
448.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
448.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
447.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
447.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
447.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
447.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
447.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
441.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
441.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
440.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
439.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
437.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
434.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
433.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
431.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
431.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
430.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
429.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
428.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
427.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
426.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
423.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
423.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
422.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
421.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
421.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
420.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
420.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
420.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
420.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
419.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
417.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
417.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
417.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
416.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
416.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
415.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
415.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
413.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
411.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
410.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
406.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
406.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
404.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
404.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
403.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
403.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
403.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
401.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
400.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
398.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
396.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
395.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
394.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
389.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
388.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
387.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
387.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
387.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
386.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
386.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
380.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
379.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
378.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
377.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
376.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
376.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
373.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
373.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
372.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
369.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
369.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
367.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
367.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
367.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
365.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
364.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
361.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
355.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
355.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
355.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
355.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
351.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
351.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
340.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
337.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
337.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
335.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
333.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
332.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
332.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
329.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
329.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
325.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
322.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
320.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
320.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
315.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
313.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
307.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
306.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
304.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
298.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
288.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
285.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
280.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
274.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
272.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
270.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
269.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
269.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
267.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
264.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
264.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
255.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
255.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
254.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
253.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
245.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
242.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
233.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
226.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
222.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
214.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
213.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EDF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
382.3
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1008.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
969.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
937.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
932.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
915.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
856.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
785.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
782.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
747.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
735.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
734.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
723.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
702.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
667.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
654.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
615.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
611.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
586.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
578.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
573.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
568.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
566.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
563.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
560.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
559.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
554.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
549.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
547.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
540.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
533.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
532.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
529.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
514.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
510.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
498.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
493.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
493.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
488.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
487.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
484.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
481.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
476.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
470.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
467.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
465.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
464.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
464.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
462.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
457.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
454.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
451.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
450.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
447.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
444.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
442.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
438.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
437.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
437.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
433.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
432.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
428.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
427.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
425.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
425.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
424.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
424.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
423.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
422.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
419.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
415.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
411.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
410.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
409.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
409.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
406.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
405.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
402.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
402.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
401.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
400.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
399.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
398.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
397.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
396.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
394.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
394.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
394.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
394.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
393.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
393.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
392.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
388.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
388.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
388.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
385.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
384.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
384.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
381.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
375.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
374.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
374.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
371.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
370.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
369.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
368.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
368.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
366.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
365.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
364.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
363.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
358.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
355.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
355.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
353.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
353.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
353.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
352.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
352.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
350.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
344.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
344.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
344.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
343.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
342.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
340.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
339.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
338.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
338.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
335.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
334.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
334.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
332.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
329.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
328.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
326.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
326.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
325.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
324.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
324.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
321.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
321.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
320.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
316.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
315.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
315.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
314.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
313.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
312.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
310.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
308.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
307.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
307.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
306.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
306.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
305.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
305.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
303.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
302.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
300.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
299.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
298.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
298.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
297.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
297.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
296.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
292.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
291.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
291.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
289.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
288.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
288.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
287.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
284.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
283.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
280.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
279.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
276.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
270.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
270.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
268.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
267.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
266.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
265.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
264.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
264.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
263.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
259.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
258.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
256.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
254.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
253.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
253.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
250.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
249.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
249.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
249.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
246.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
245.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
243.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
243.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
242.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
241.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
240.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
239.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
238.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
236.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
236.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
236.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
236.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
235.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
234.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
233.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
233.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
231.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
229.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
226.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
217.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
216.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
216.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
213.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
206.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
202.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
198.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
196.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
179.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
172.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
170.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
163.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
155.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
149.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
97.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.4
1021
Tumor
1.3
865
Tumor
1.1
533
Tumor
1.1
965
Tumor
1.1
737
Tumor
0.9
425
Tumor
0.9
663
Tumor
0.9
937
Tumor
0.9
1013
Tumor
0.9
695
Tumor
0.9
487
Tumor
0.8
411
Tumor
0.8
493
Tumor
0.8
977
Tumor
0.8
913
Tumor
0.7
921
Tumor
0.7
951
Tumor
0.7
777
Tumor
0.7
647
Tumor
0.7
515
Tumor
0.7
923
Tumor
0.6
983
Tumor
0.6
513
Tumor
0.6
355
Tumor
0.6
967
Tumor
0.6
567
Tumor
0.6
313
Tumor
0.6
863
Tumor
0.6
881
Tumor
0.6
1025
Tumor
0.6
724
Normal
0.5
477
Tumor
0.5
557
Tumor
0.5
727
Tumor
0.5
743
Tumor
0.5
471
Tumor
0.5
473
Tumor
0.5
285
Tumor
0.5
911
Tumor
0.5
851
Tumor
0.5
267
Tumor
0.5
635
Tumor
0.5
537
Tumor
0.5
1043
Tumor
0.5
523
Tumor
0.5
553
Tumor
0.4
465
Tumor
0.4
1041
Tumor
0.4
1015
Tumor
0.4
483
Tumor
0.4
785
Tumor
0.4
661
Tumor
0.4
484
Normal
0.4
925
Tumor
0.4
943
Tumor
0.4
963
Tumor
0.4
341
Tumor
0.4
1014
Normal
0.4
447
Tumor
0.4
277
Tumor
0.4
617
Tumor
0.4
131
Tumor
0.4
697
Tumor
0.4
953
Tumor
0.4
365
Tumor
0.3
745
Tumor
0.3
123
Tumor
0.3
327
Tumor
0.3
1031
Tumor
0.3
714
Normal
0.3
627
Tumor
0.3
755
Tumor
0.3
968
Normal
0.3
817
Tumor
0.3
554
Normal
0.3
171
Tumor
0.3
984
Normal
0.3
721
Tumor
0.3
955
Tumor
0.3
351
Tumor
0.3
728
Normal
0.3
746
Normal
0.3
518
Normal
0.3
1028
Normal
0.2
912
Normal
0.2
427
Tumor
0.2
696
Normal
0.2
866
Normal
0.2
435
Tumor
0.2
467
Tumor
0.2
966
Normal
0.2
958
Normal
0.2
915
Tumor
0.2
545
Tumor
0.2
546
Normal
0.2
824
Normal
0.2
412
Normal
0.2
918
Normal
0.2
461
Tumor
0.2
462
Normal
0.2
527
Tumor
0.2
514
Normal
0.2
823
Tumor
0.2
135
Tumor
0.2
364
Normal
0.2
571
Tumor
0.2
978
Normal
0.2
1045
Tumor
0.2
922
Normal
0.2
786
Normal
0.2
528
Normal
0.2
383
Tumor
0.2
1044
Normal
0.2
716
Normal
0.2
778
Normal
0.2
852
Normal
0.2
816
Normal
0.2
864
Normal
0.1
516
Normal
0.1
472
Normal
0.1
494
Normal
0.1
474
Normal
0.1
884
Normal
0.1
873
Tumor
0.1
517
Tumor
0.1
698
Normal
0.1
883
Tumor
0.1
916
Normal
0.1
1016
Normal
0.1
228
Normal
0.1
857
Tumor
0.1
161
Tumor
0.1
952
Normal
0.1
957
Tumor
0.1
448
Normal
0.1
572
Normal
0.1
878
Normal
0.1
1026
Normal
0.1
924
Normal
0.1
858
Normal
0.1
938
Normal
0.1
573
Tumor
0.1
535
Tumor
0.1
741
Tumor
0.1
1022
Normal
0.1
862
Normal
0.1
534
Normal
0.1
964
Normal
0.1
723
Tumor
0.1
815
Tumor
0.1
498
Normal
0.1
756
Normal
0.1
286
Normal
0.1
223
Tumor
0.1
415
Tumor
0.1
455
Tumor
0.1
525
Tumor
0.0
975
Tumor
0.0
524
Normal
0.0
353
Tumor
0.0
868
Normal
0.0
558
Normal
0.0
271
Tumor
0.0
141
Tumor
0.0
628
Normal
0.0
944
Normal
0.0
538
Normal
0.0
686
Normal
0.0
395
Tumor
0.0
492
Normal
0.0
482
Normal
0.0
882
Normal
0.0
616
Normal
0.0
1042
Normal
0.0
357
Tumor
0.0
361
Tumor
0.0
722
Normal
0.0
914
Normal
0.0
328
Normal
0.0
536
Normal
0.0
481
Tumor
0.0
284
Normal
0.0
212
Normal
0.0
1032
Normal
0.0
926
Normal
0.0
488
Normal
0.0
982
Normal
0.0
375
Tumor
0.0
443
Tumor
0.0
954
Normal
0.0
413
Tumor
0.0
818
Normal
0.0
356
Normal
0.0
715
Tumor
0.0
211
Tumor
0.0
433
Tumor
0.0
137
Tumor
0.0
861
Tumor
0.0
738
Normal
0.0
231
Tumor
-0.1
648
Normal
-0.1
416
Normal
-0.1
147
Tumor
-0.1
867
Tumor
-0.1
385
Tumor
-0.1
431
Tumor
-0.1
981
Tumor
-0.1
568
Normal
-0.1
451
Tumor
-0.1
742
Normal
-0.1
526
Normal
-0.1
257
Tumor
-0.1
195
Tumor
-0.1
362
Normal
-0.1
1046
Normal
-0.1
672
Normal
-0.1
142
Normal
-0.1
393
Tumor
-0.1
664
Normal
-0.1
662
Normal
-0.1
744
Normal
-0.1
564
Normal
-0.1
127
Tumor
-0.2
1027
Tumor
-0.2
298
Normal
-0.2
478
Normal
-0.2
874
Normal
-0.2
976
Normal
-0.2
671
Tumor
-0.2
221
Tumor
-0.2
213
Tumor
-0.2
112
Tumor
-0.2
423
Tumor
-0.2
217
Tumor
-0.2
187
Tumor
-0.2
563
Tumor
-0.2
224
Normal
-0.2
436
Normal
-0.2
956
Normal
-0.2
615
Tumor
-0.2
466
Normal
-0.2
636
Normal
-0.3
113
Tumor
-0.3
145
Tumor
-0.3
463
Tumor
-0.3
665
Tumor
-0.3
262
Normal
-0.3
232
Normal
-0.3
642
Normal
-0.3
297
Tumor
-0.3
641
Tumor
-0.3
283
Tumor
-0.3
618
Normal
-0.3
261
Tumor
-0.3
917
Tumor
-0.3
352
Normal
-0.3
434
Normal
-0.4
456
Normal
-0.4
384
Normal
-0.4
424
Normal
-0.4
445
Tumor
-0.4
148
Normal
-0.4
428
Normal
-0.4
128
Normal
-0.4
814
Normal
-0.4
258
Normal
-0.4
311
Tumor
-0.4
666
Normal
-0.4
111
Normal
-0.4
468
Normal
-0.4
464
Normal
-0.4
136
Normal
-0.4
278
Normal
-0.4
222
Normal
-0.4
446
Normal
-0.5
191
Tumor
-0.5
214
Normal
-0.5
354
Normal
-0.5
574
Normal
-0.5
162
Normal
-0.5
227
Tumor
-0.5
114
Normal
-0.5
196
Normal
-0.5
452
Normal
-0.5
268
Normal
-0.5
312
Normal
-0.5
421
Tumor
-0.5
426
Normal
-0.5
272
Normal
-0.5
396
Normal
-0.5
387
Tumor
-0.5
376
Normal
-0.5
132
Normal
-0.5
218
Normal
-0.5
392
Normal
-0.5
344
Normal
-0.5
314
Normal
-0.5
138
Normal
-0.5
391
Tumor
-0.5
367
Tumor
-0.6
422
Normal
-0.6
125
Tumor
-0.6
386
Normal
-0.6
432
Normal
-0.6
414
Normal
-0.6
491
Tumor
-0.6
444
Normal
-0.6
146
Normal
-0.6
185
Tumor
-0.6
342
Normal
-0.6
331
Tumor
-0.6
343
Tumor
-0.6
188
Normal
-0.6
368
Normal
-0.6
358
Normal
-0.7
363
Tumor
-0.7
813
Tumor
-0.7
172
Normal
-0.7
388
Normal
-0.7
124
Normal
-0.7
713
Tumor
-0.7
332
Normal
-0.7
186
Normal
-0.7
366
Normal
-0.7
126
Normal
-0.7
394
Normal
-0.8
192
Normal
-0.8
877
Tumor
-0.8
685
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.