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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF4H is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
108.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
268.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
265.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
246.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
242.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
239.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
229.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
221.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
213.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
197.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
196.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
196.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
193.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
189.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
183.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
183.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
183.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
180.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
179.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
174.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
173.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
170.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
170.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
170.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
170.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
169.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
169.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
169.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
169.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
167.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
167.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
167.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
165.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
164.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
163.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
162.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
161.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
160.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
160.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
158.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
157.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
157.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
156.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
156.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
156.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
152.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
152.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
152.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
152.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
151.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
151.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
151.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
151.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
150.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
150.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
150.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
149.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
146.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
145.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
145.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
144.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
143.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
142.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
141.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
141.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
140.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
139.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
138.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
138.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
138.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
138.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
137.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
135.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
135.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
134.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
134.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
134.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
133.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
133.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
133.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
132.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
132.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
131.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
131.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
131.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
131.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
130.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
129.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
129.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
129.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
129.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
129.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
128.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
128.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
128.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
127.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
127.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
127.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
126.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
126.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
126.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
126.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
125.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
124.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
124.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
123.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
123.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
123.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
123.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
122.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
122.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
122.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
121.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
121.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
121.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
121.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
121.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
121.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
121.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
121.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
121.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
120.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
120.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
119.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
119.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
119.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
119.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
118.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
117.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
117.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
117.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
117.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
117.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
117.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
116.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
116.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
115.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
115.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
115.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
115.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
114.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
114.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
114.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
114.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
114.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
113.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
113.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
113.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
113.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
113.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
113.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
113.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
112.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
112.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
111.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
111.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
111.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
111.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
110.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
110.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
110.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
110.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
110.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
110.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
109.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
109.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
109.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
108.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
107.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
107.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
107.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
107.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
107.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
107.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
107.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
107.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
107.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
106.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
105.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
105.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
105.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
105.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
105.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
104.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
104.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
104.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
104.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
104.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
103.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
103.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
102.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
102.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
102.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
102.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
102.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
102.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
101.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
101.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
101.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
100.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
100.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
100.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
100.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
99.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
99.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
99.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
99.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
98.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
98.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
98.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
98.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
98.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
98.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
97.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
97.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
97.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
96.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
96.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
95.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
95.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
95.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
94.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
94.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
93.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
93.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
93.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
93.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
93.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
93.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
92.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
92.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
92.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
92.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
92.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
92.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
91.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
91.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
91.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
91.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
91.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
91.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
90.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
90.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
90.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
90.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
89.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
89.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
89.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
88.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
88.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
87.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
87.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
87.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
87.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
87.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
87.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
86.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
86.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
86.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
86.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
86.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
86.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
85.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
85.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
84.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
84.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
84.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
84.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
84.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
84.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
84.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
84.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
84.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
83.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
82.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
82.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
82.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
82.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
81.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
81.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
81.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
81.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
80.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
80.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
79.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
79.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
78.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
78.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
77.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
77.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
77.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
76.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
76.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
75.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
75.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
74.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
74.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
74.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
74.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
73.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
73.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
73.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
73.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
73.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
72.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
71.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
71.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
70.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
70.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
70.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
69.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
68.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
66.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
65.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
65.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
65.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
65.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
65.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
65.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
63.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
63.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
63.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
62.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
62.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
61.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
60.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
58.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
55.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
55.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
54.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
53.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
53.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
52.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
51.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
49.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
49.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
49.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
47.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
44.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
44.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
41.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
34.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EIF4H is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
100.0
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
202.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
191.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
190.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
187.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
187.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
184.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
177.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
174.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
170.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
169.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
166.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
159.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
156.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
155.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
153.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
152.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
147.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
147.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
146.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
145.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
143.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
143.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
143.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
142.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
142.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
138.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
137.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
133.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
133.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
132.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
132.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
130.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
128.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
128.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
127.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
126.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
126.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
125.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
124.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
124.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
123.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
123.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
123.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
122.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
121.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
120.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
119.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
119.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
119.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
118.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
118.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
118.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
118.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
118.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
117.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
117.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
117.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
117.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
115.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
114.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
113.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
113.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
112.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
112.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
112.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
112.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
111.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
111.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
110.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
110.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
110.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
109.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
109.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
107.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
107.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
107.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
107.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
107.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
106.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
106.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
106.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
105.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
105.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
105.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
105.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
105.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
104.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
104.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
104.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
103.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
103.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
103.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
103.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
103.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
103.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
102.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
102.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
102.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
101.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
101.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
100.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
100.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
100.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
99.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
99.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
99.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
99.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
98.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
98.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
98.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
97.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
97.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
97.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
97.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
97.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
97.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
96.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
96.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
96.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
96.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
95.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
95.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
94.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
93.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
93.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
93.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
93.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
92.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
92.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
92.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
92.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
91.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
91.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
91.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
91.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
90.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
90.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
90.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
90.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
90.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
89.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
89.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
88.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
88.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
88.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
87.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
87.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
87.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
87.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
86.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
86.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
86.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
86.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
86.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
85.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
85.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
84.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
83.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
83.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
82.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
81.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
81.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
80.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
80.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
80.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
79.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
79.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
79.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
79.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
78.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
78.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
78.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
77.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
77.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
77.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
76.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
76.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
76.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
76.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
76.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
75.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
75.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
75.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
75.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
75.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
74.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
74.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
74.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
74.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
74.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
74.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
74.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
74.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
73.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
73.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
73.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
72.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
71.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
71.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
70.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
70.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
69.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
69.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
67.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
65.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
65.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
64.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
64.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
63.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
62.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
61.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
60.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
60.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
59.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
59.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
55.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
54.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
53.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
53.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
0.9
957
Tumor
0.8
965
Tumor
0.7
481
Tumor
0.7
743
Tumor
0.7
1013
Tumor
0.5
977
Tumor
0.4
727
Tumor
0.4
1027
Tumor
0.4
425
Tumor
0.4
351
Tumor
0.4
313
Tumor
0.4
755
Tumor
0.4
915
Tumor
0.4
635
Tumor
0.4
951
Tumor
0.3
647
Tumor
0.3
487
Tumor
0.3
131
Tumor
0.3
661
Tumor
0.3
497
Tumor
0.3
785
Tumor
0.3
983
Tumor
0.3
1045
Tumor
0.3
865
Tumor
0.3
517
Tumor
0.3
911
Tumor
0.3
1021
Tumor
0.3
545
Tumor
0.3
411
Tumor
0.3
923
Tumor
0.3
285
Tumor
0.3
123
Tumor
0.3
937
Tumor
0.2
455
Tumor
0.2
537
Tumor
0.2
413
Tumor
0.2
925
Tumor
0.2
137
Tumor
0.2
483
Tumor
0.2
883
Tumor
0.2
227
Tumor
0.2
963
Tumor
0.2
484
Normal
0.2
943
Tumor
0.2
363
Tumor
0.2
491
Tumor
0.2
921
Tumor
0.2
966
Normal
0.2
912
Normal
0.2
471
Tumor
0.2
665
Tumor
0.2
573
Tumor
0.2
271
Tumor
0.2
663
Tumor
0.2
477
Tumor
0.2
571
Tumor
0.2
777
Tumor
0.2
125
Tumor
0.2
964
Normal
0.2
353
Tumor
0.2
161
Tumor
0.2
527
Tumor
0.2
975
Tumor
0.2
913
Tumor
0.2
231
Tumor
0.2
857
Tumor
0.1
221
Tumor
0.1
355
Tumor
0.1
881
Tumor
0.1
882
Normal
0.1
445
Tumor
0.1
918
Normal
0.1
431
Tumor
0.1
867
Tumor
0.1
518
Normal
0.1
515
Tumor
0.1
648
Normal
0.1
554
Normal
0.1
195
Tumor
0.1
1031
Tumor
0.1
327
Tumor
0.1
525
Tumor
0.1
786
Normal
0.1
385
Tumor
0.1
953
Tumor
0.1
924
Normal
0.1
695
Tumor
0.1
297
Tumor
0.1
878
Normal
0.1
728
Normal
0.1
141
Tumor
0.1
664
Normal
0.1
618
Normal
0.1
858
Normal
0.1
113
Tumor
0.1
955
Tumor
0.1
1026
Normal
0.1
298
Normal
0.1
171
Tumor
0.1
737
Tumor
0.1
498
Normal
0.1
696
Normal
0.1
824
Normal
0.1
968
Normal
0.1
393
Tumor
0.1
715
Tumor
0.1
815
Tumor
0.1
267
Tumor
0.1
387
Tumor
0.1
114
Normal
0.1
823
Tumor
0.1
286
Normal
0.1
232
Normal
0.1
627
Tumor
0.1
926
Normal
0.1
958
Normal
0.1
666
Normal
0.1
724
Normal
0.1
135
Tumor
0.1
617
Tumor
0.1
818
Normal
0.1
861
Tumor
0.1
435
Tumor
0.1
746
Normal
0.1
493
Tumor
0.1
914
Normal
0.1
851
Tumor
0.1
864
Normal
0.1
641
Tumor
0.0
922
Normal
0.0
436
Normal
0.0
474
Normal
0.0
1016
Normal
0.0
447
Tumor
0.0
222
Normal
0.0
568
Normal
0.0
528
Normal
0.0
981
Tumor
0.0
128
Normal
0.0
461
Tumor
0.0
714
Normal
0.0
628
Normal
0.0
662
Normal
0.0
642
Normal
0.0
443
Tumor
0.0
982
Normal
0.0
391
Tumor
0.0
741
Tumor
0.0
361
Tumor
0.0
816
Normal
0.0
111
Normal
0.0
944
Normal
0.0
852
Normal
0.0
357
Tumor
0.0
574
Normal
0.0
482
Normal
0.0
698
Normal
0.0
984
Normal
0.0
533
Tumor
0.0
916
Normal
0.0
283
Tumor
0.0
258
Normal
0.0
284
Normal
0.0
472
Normal
0.0
211
Tumor
0.0
671
Tumor
0.0
952
Normal
0.0
546
Normal
0.0
1022
Normal
0.0
873
Tumor
0.0
213
Tumor
0.0
228
Normal
0.0
415
Tumor
0.0
1014
Normal
0.0
516
Normal
0.0
1025
Tumor
0.0
526
Normal
0.0
412
Normal
0.0
311
Tumor
0.0
742
Normal
0.0
778
Normal
0.0
884
Normal
0.0
866
Normal
0.0
124
Normal
0.0
465
Tumor
0.0
572
Normal
0.0
196
Normal
0.0
697
Tumor
0.0
976
Normal
0.0
814
Normal
0.0
1015
Tumor
0.0
1041
Tumor
0.0
223
Tumor
0.0
341
Tumor
0.0
383
Tumor
0.0
1028
Normal
0.0
416
Normal
0.0
462
Normal
0.0
738
Normal
0.0
261
Tumor
0.0
191
Tumor
0.0
488
Normal
0.0
127
Tumor
0.0
553
Tumor
0.0
126
Normal
0.0
535
Tumor
0.0
142
Normal
0.0
1032
Normal
0.0
672
Normal
0.0
862
Normal
0.0
473
Tumor
0.0
564
Normal
0.0
427
Tumor
0.0
456
Normal
0.0
756
Normal
0.0
278
Normal
0.0
744
Normal
0.0
364
Normal
0.0
365
Tumor
0.0
148
Normal
0.0
978
Normal
0.0
448
Normal
0.0
716
Normal
0.0
368
Normal
0.0
1042
Normal
0.0
446
Normal
-0.1
954
Normal
-0.1
494
Normal
-0.1
615
Tumor
-0.1
938
Normal
-0.1
536
Normal
-0.1
172
Normal
-0.1
1046
Normal
-0.1
868
Normal
-0.1
426
Normal
-0.1
312
Normal
-0.1
362
Normal
-0.1
466
Normal
-0.1
272
Normal
-0.1
563
Tumor
-0.1
492
Normal
-0.1
396
Normal
-0.1
513
Tumor
-0.1
277
Tumor
-0.1
917
Tumor
-0.1
217
Tumor
-0.1
558
Normal
-0.1
388
Normal
-0.1
423
Tumor
-0.1
212
Normal
-0.1
723
Tumor
-0.1
523
Tumor
-0.1
636
Normal
-0.1
451
Tumor
-0.1
224
Normal
-0.1
257
Tumor
-0.1
514
Normal
-0.1
268
Normal
-0.1
214
Normal
-0.1
444
Normal
-0.1
162
Normal
-0.1
187
Tumor
-0.1
136
Normal
-0.1
813
Tumor
-0.1
467
Tumor
-0.1
463
Tumor
-0.1
186
Normal
-0.1
331
Tumor
-0.1
262
Normal
-0.1
534
Normal
-0.1
428
Normal
-0.1
538
Normal
-0.1
524
Normal
-0.1
218
Normal
-0.1
145
Tumor
-0.1
1044
Normal
-0.1
132
Normal
-0.1
352
Normal
-0.1
721
Tumor
-0.1
356
Normal
-0.1
956
Normal
-0.1
468
Normal
-0.1
452
Normal
-0.1
146
Normal
-0.2
375
Tumor
-0.2
874
Normal
-0.2
332
Normal
-0.2
386
Normal
-0.2
745
Tumor
-0.2
188
Normal
-0.2
478
Normal
-0.2
557
Tumor
-0.2
616
Normal
-0.2
392
Normal
-0.2
424
Normal
-0.2
464
Normal
-0.2
185
Tumor
-0.2
394
Normal
-0.2
192
Normal
-0.2
422
Normal
-0.2
328
Normal
-0.2
366
Normal
-0.2
432
Normal
-0.2
395
Tumor
-0.2
713
Tumor
-0.2
147
Tumor
-0.2
686
Normal
-0.2
433
Tumor
-0.2
376
Normal
-0.2
138
Normal
-0.2
358
Normal
-0.2
1043
Tumor
-0.2
384
Normal
-0.2
354
Normal
-0.2
314
Normal
-0.2
414
Normal
-0.2
434
Normal
-0.3
877
Tumor
-0.3
722
Normal
-0.3
344
Normal
-0.3
342
Normal
-0.3
367
Tumor
-0.3
817
Tumor
-0.3
112
Tumor
-0.3
567
Tumor
-0.3
343
Tumor
-0.4
421
Tumor
-0.4
863
Tumor
-0.7
685
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.