MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.7 nTPM
HPA Brain:160.0 nTPM
GTEx:70.7 nTPM
FANTOM5:86.3 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:26.5 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 160.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 146.0
2586 Male, age 75, left hemisphere 216.5
2666 Male, age 74, left hemisphere 157.9
1830 Male, age 51, unknown 147.7
2828 Female, age 72, unknown 143.3
1833 Male, age 53, unknown 141.6
1827 Male, age 72, unknown 136.6
2411 Female, age 72, unknown 134.2
1870 Female, age 42, unknown 131.0
2019 Male, age 18, unknown 130.3
2219 Male, age 76, both hemispheres 120.5
Dorsal raphe nucleus
nTPM: 137.6
2016 Female, age 72, unknown 144.3
2750 Male, age 76, both hemispheres 144.1
1828 Male, age 53, unknown 142.9
2047 Male, age 72, unknown 140.0
2298 Female, age 72, unknown 116.7
Inferior colliculus
nTPM: 113.1
2849 Male, age 72, unknown 131.2
1890 Male, age 53, unknown 113.7
1848 Female, age 42, unknown 107.1
2097 Female, age 72, unknown 100.5
Median raphe nucleus
nTPM: 123.6
2220 Male, age 76, midline 123.6
Periaquaductal grey, anterior
nTPM: 139.5
2502 Female, age 75, unknown 151.5
1947 Male, age 18, unknown 138.8
1795 Male, age 51, unknown 128.3
Periaquaductal grey, dorsal
nTPM: 119.8
2850 Male, age 76, both hemispheres 126.9
1831 Male, age 72, unknown 122.0
1840 Male, age 53, unknown 117.1
2464 Female, age 72, unknown 113.2
Periaquaductal grey, lateral
nTPM: 121.0
2053 Male, age 18, unknown 128.4
2140 Male, age 76, both hemispheres 119.4
2272 Male, age 74, both hemispheres 115.2
Pretectal area
nTPM: 116.4
2407 Male, age 75, both hemispheres 157.1
2825 Male, age 18, unknown 133.5
1815 Male, age 53, unknown 119.8
2007 Male, age 72, unknown 118.5
2316 Male, age 76, right hemisphere 115.0
2273 Male, age 74, both hemispheres 114.1
1817 Female, age 42, unknown 111.6
1816 Male, age 51, unknown 107.1
2667 Female, age 75, unknown 104.2
2224 Female, age 72, unknown 100.6
1944 Female, age 72, unknown 98.6
Red nucleus
nTPM: 160.0
2584 Male, age 75, left hemisphere 205.3
1904 Male, age 53, unknown 165.3
2588 Male, age 74, left hemisphere 165.3
2769 Male, age 72, unknown 165.3
2725 Female, age 75, unknown 160.1
1865 Male, age 51, unknown 159.3
2227 Male, age 72, unknown 159.1
1821 Female, age 72, unknown 154.3
2823 Male, age 76, right hemisphere 153.8
2503 Female, age 72, unknown 149.6
1954 Female, age 42, unknown 143.4
2785 Male, age 18, unknown 139.4
Substantia nigra
nTPM: 145.8
2583 Male, age 75, right hemisphere 175.0
2699 Male, age 18, unknown 163.7
1916 Female, age 42, unknown 161.5
2665 Male, age 74, both hemispheres 158.1
1851 Male, age 51, unknown 154.4
2590 Female, age 75, unknown 148.4
1941 Male, age 53, unknown 146.3
2409 Female, age 72, unknown 124.0
1889 Female, age 72, unknown 118.2
2241 Male, age 72, unknown 108.0
Superior colliculus
nTPM: 131.8
2664 Male, age 75, both hemispheres 183.4
1995 Male, age 72, unknown 142.1
1913 Female, age 42, unknown 136.9
1839 Male, age 51, unknown 135.9
2587 Male, age 74, left hemisphere 130.3
2668 Female, age 75, unknown 128.1
1796 Male, age 53, unknown 123.9
1895 Male, age 76, right hemisphere 121.7
2261 Male, age 18, unknown 118.4
2087 Female, age 72, unknown 97.5
Ventral tegmental area
nTPM: 137.4
2223 Female, age 72, unknown 145.9
2410 Female, age 72, unknown 142.9
1942 Male, age 51, unknown 140.1
1915 Female, age 42, unknown 139.3
2021 Male, age 53, unknown 130.5
2218 Male, age 76, both hemispheres 125.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.7
Samples: 139

Max nTPM: 132.1
Min nTPM: 33.1
Std nTPM: 17.9
Median nTPM: 67.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 132.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 125.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 116.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 112.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 109.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 108.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 106.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 106.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 103.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 103.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.3
FF:10158-103A5 76 years, female 86.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.2
Samples: 4

Max nTPM: 27.0
Min nTPM: 17.4
Sample A Female 27.0
Sample B Female 17.4
Sample C Male 26.6
Sample D Male 25.7
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 33.8
Min nTPM: 19.7
Sample A Female 33.8
Sample B Female 19.7
Sample C Male 28.7
Sample D Male 20.1
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 17.6
Min nTPM: 15.3
Sample B Female 17.6
Sample C Male 17.6
Sample D Male 15.3
Superior colliculi
nTPM: 20.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 11.1
Sample A Female 20.7
Sample B Female 11.1
Sample C Male 26.9
Sample D Male 23.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 28.1
Min nTPM: 24.7
Sample A Male 28.1
Sample B Male 24.7
Sample C Female 25.5
Sample D Female 27.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
2137 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 5.6
2138 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 5.2
67764933 Antisense, RP_040916_02_E11, Mouse strain C57BL/6J (56 days, male) 1.3

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