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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM248 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
101.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
73.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
72.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
71.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
51.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
50.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
47.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
45.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
42.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
39.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
31.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
30.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
1.3
483
Tumor
0.8
535
Tumor
0.8
331
Tumor
0.8
493
Tumor
0.8
573
Tumor
0.7
212
Normal
0.6
284
Normal
0.6
697
Tumor
0.6
228
Normal
0.6
545
Tumor
0.6
695
Tumor
0.5
536
Normal
0.5
223
Tumor
0.5
713
Tumor
0.4
786
Normal
0.4
785
Tumor
0.4
574
Normal
0.4
517
Tumor
0.4
497
Tumor
0.4
671
Tumor
0.4
755
Tumor
0.4
473
Tumor
0.3
436
Normal
0.3
823
Tumor
0.3
224
Normal
0.3
661
Tumor
0.3
498
Normal
0.3
756
Normal
0.3
968
Normal
0.3
721
Tumor
0.3
966
Normal
0.3
481
Tumor
0.3
817
Tumor
0.3
958
Normal
0.2
714
Normal
0.2
425
Tumor
0.2
976
Normal
0.2
746
Normal
0.2
428
Normal
0.2
514
Normal
0.2
664
Normal
0.2
283
Tumor
0.2
716
Normal
0.2
494
Normal
0.1
696
Normal
0.1
722
Normal
0.1
297
Tumor
0.1
572
Normal
0.1
963
Tumor
0.1
472
Normal
0.1
484
Normal
0.1
227
Tumor
0.1
286
Normal
0.1
557
Tumor
0.1
111
Normal
0.1
426
Normal
0.1
686
Normal
0.1
332
Normal
0.1
211
Tumor
0.1
533
Tumor
0.1
314
Normal
0.1
447
Tumor
0.1
778
Normal
0.1
487
Tumor
0.1
278
Normal
0.1
524
Normal
0.1
777
Tumor
0.1
488
Normal
0.1
285
Tumor
0.1
554
Normal
0.1
471
Tumor
0.1
1045
Tumor
0.0
857
Tumor
0.0
662
Normal
0.0
474
Normal
0.0
414
Normal
0.0
647
Tumor
0.0
852
Normal
0.0
312
Normal
0.0
298
Normal
0.0
525
Tumor
0.0
534
Normal
0.0
964
Normal
0.0
672
Normal
0.0
571
Tumor
0.0
478
Normal
0.0
814
Normal
0.0
975
Tumor
0.0
126
Normal
0.0
114
Normal
0.0
311
Tumor
0.0
957
Tumor
0.0
462
Normal
0.0
665
Tumor
0.0
745
Tumor
0.0
482
Normal
0.0
851
Tumor
0.0
967
Tumor
0.0
492
Normal
0.0
558
Normal
-0.1
648
Normal
-0.1
435
Tumor
-0.1
698
Normal
-0.1
1046
Normal
-0.1
124
Normal
-0.1
277
Tumor
-0.1
715
Tumor
-0.1
516
Normal
-0.1
526
Normal
-0.1
858
Normal
-0.1
563
Tumor
-0.1
813
Tumor
-0.1
663
Tumor
-0.1
461
Tumor
-0.1
567
Tumor
-0.1
127
Tumor
-0.1
564
Normal
-0.2
125
Tumor
-0.2
424
Normal
-0.2
685
Tumor
-0.2
515
Tumor
-0.2
448
Normal
-0.2
434
Normal
-0.2
538
Normal
-0.2
113
Tumor
-0.2
513
Tumor
-0.2
518
Normal
-0.2
965
Tumor
-0.2
527
Tumor
-0.3
528
Normal
-0.3
413
Tumor
-0.3
1044
Normal
-0.3
568
Normal
-0.3
128
Normal
-0.3
123
Tumor
-0.4
432
Normal
-0.4
523
Tumor
-0.4
818
Normal
-0.4
815
Tumor
-0.4
553
Tumor
-0.4
824
Normal
-0.4
112
Tumor
-0.4
421
Tumor
-0.4
423
Tumor
-0.4
446
Normal
-0.5
816
Normal
-0.5
313
Tumor
-0.5
666
Normal
-0.5
444
Normal
-0.5
1043
Tumor
-0.5
422
Normal
-0.5
445
Tumor
-0.5
477
Tumor
-0.5
546
Normal
-0.6
537
Tumor
-0.6
427
Tumor
-0.6
431
Tumor
-0.7
433
Tumor
-1.0
443
Tumor
-1.0
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
