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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMA2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
130.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
301.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
289.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
281.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
269.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
268.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
264.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
258.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
240.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
240.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
235.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
232.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
229.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
222.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
219.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
215.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
214.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
214.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
213.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
212.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
211.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
211.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
208.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
205.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
204.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
200.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
198.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
196.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
194.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
192.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
192.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
189.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
189.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
189.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
188.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
188.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
187.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
187.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
186.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
184.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
183.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
182.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
180.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
180.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
179.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
178.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
177.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
175.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
175.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
174.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
174.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
173.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
173.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
171.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
171.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
169.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
169.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
169.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
168.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
168.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
168.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
166.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
166.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
166.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
165.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
164.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
163.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
163.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
163.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
163.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
162.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
162.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
161.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
161.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
160.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
160.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
160.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
159.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
159.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
158.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
158.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
157.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
157.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
156.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
156.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
155.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
155.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
155.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
154.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
154.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
154.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
153.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
153.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
152.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
151.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
151.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
150.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
150.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
149.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
148.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
148.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
148.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
147.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
147.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
147.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
146.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
145.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
145.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
144.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
144.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
144.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
143.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
143.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
143.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
142.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
142.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
142.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
142.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
142.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
142.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
142.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
141.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
141.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
141.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
141.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
141.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
140.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
140.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
139.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
139.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
138.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
138.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
138.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
138.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
137.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
137.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
137.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
136.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
136.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
136.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
135.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
135.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
134.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
134.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
134.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
134.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
134.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
134.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
134.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
133.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
132.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
132.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
132.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
132.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
131.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
131.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
131.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
130.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
130.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
130.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
130.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
130.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
130.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
130.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
129.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
129.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
128.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
128.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
128.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
128.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
128.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
128.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
127.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
127.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
126.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
126.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
125.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
125.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
125.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
125.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
123.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
123.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
123.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
122.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
122.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
122.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
122.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
121.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
121.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
121.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
121.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
121.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
121.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
121.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
120.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
120.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
120.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
120.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
119.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
119.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
119.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
119.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
119.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
118.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
118.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
117.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
117.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
117.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
117.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
116.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
116.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
116.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
116.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
116.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
116.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
116.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
116.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
116.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
115.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
115.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
114.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
114.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
114.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
114.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
114.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
113.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
113.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
113.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
112.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
112.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
112.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
111.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
111.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
111.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
110.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
110.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
110.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
110.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
110.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
109.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
109.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
108.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
108.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
108.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
108.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
108.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
108.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
108.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
107.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
107.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
107.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
107.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
107.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
106.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
106.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
105.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
105.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
105.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
105.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
105.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
104.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
104.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
104.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
104.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
104.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
104.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
104.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
104.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
103.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
103.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
103.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
103.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
102.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
102.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
102.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
102.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
102.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
102.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
102.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
101.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
101.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
101.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
101.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
101.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
99.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
99.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
99.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
99.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
99.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
98.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
98.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
98.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
98.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
98.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
98.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
97.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
97.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
97.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
96.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
96.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
96.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
95.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
95.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
95.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
95.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
94.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
93.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
93.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
92.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
91.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
91.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
91.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
90.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
90.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
89.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
88.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
87.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
85.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
85.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
85.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
84.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
83.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
82.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
82.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
80.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
79.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
78.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
78.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
78.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
78.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
77.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
77.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
76.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
76.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
75.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
75.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
75.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
75.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
74.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
74.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
71.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
69.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
69.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
68.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
65.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
65.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
59.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
58.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
57.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
57.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
43.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
38.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
35.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
34.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMA2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
83.4
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
216.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
210.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
179.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
174.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
169.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
167.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
166.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
163.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
156.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
150.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
148.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
144.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
139.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
136.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
136.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
133.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
133.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
130.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
127.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
125.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
124.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
124.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
123.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
122.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
122.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
121.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
121.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
120.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
120.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
119.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
119.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
118.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
118.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
116.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
114.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
112.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
111.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
110.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
109.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
109.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
108.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
108.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
108.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
107.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
106.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
105.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
105.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
104.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
103.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
100.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
100.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
99.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
99.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
99.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
98.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
98.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
98.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
97.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
97.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
96.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
96.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
96.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
95.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
95.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
95.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
95.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
95.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
94.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
94.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
94.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
94.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
93.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
93.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
92.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
92.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
92.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
90.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
90.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
90.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
89.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
89.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
89.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
89.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
89.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
88.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
88.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
88.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
87.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
87.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
86.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
86.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
86.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
86.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
86.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
85.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
85.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
85.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
84.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
83.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
83.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
83.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
83.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
83.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
82.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
82.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
82.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
82.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
81.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
81.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
81.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
80.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
80.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
80.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
79.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
79.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
78.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
78.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
78.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
78.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
77.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
77.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
77.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
77.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
76.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
76.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
75.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
75.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
75.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
74.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
73.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
73.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
73.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
73.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
72.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
72.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
71.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
70.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
70.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
70.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
69.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
69.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
69.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
68.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
68.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
68.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
67.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
67.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
67.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
67.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
67.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
66.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
66.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
65.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
65.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
65.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
64.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
64.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
64.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
64.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
64.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
63.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
63.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
62.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
62.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
62.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
62.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
62.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
61.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
60.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
60.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
60.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
60.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
58.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
58.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
56.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
56.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
56.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
55.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
55.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
55.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
54.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
54.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
54.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
54.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
51.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
51.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
49.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
47.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
46.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
46.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
45.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
43.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
0.6
432
Normal
0.5
456
Normal
0.5
342
Normal
0.5
615
Tumor
0.5
298
Normal
0.5
777
Tumor
0.5
111
Normal
0.5
627
Tumor
0.4
824
Normal
0.4
128
Normal
0.4
818
Normal
0.4
272
Normal
0.4
358
Normal
0.4
422
Normal
0.4
862
Normal
0.4
148
Normal
0.4
513
Tumor
0.4
618
Normal
0.4
635
Tumor
0.4
132
Normal
0.4
218
Normal
0.4
362
Normal
0.4
414
Normal
0.4
222
Normal
0.4
452
Normal
0.4
196
Normal
0.4
426
Normal
0.4
714
Normal
0.4
376
Normal
0.4
353
Tumor
0.4
262
Normal
0.4
186
Normal
0.4
386
Normal
0.4
172
Normal
0.4
914
Normal
0.4
423
Tumor
0.4
1022
Normal
0.4
642
Normal
0.4
1026
Normal
0.4
912
Normal
0.4
278
Normal
0.4
388
Normal
0.4
258
Normal
0.4
366
Normal
0.4
866
Normal
0.4
113
Tumor
0.3
742
Normal
0.3
314
Normal
0.3
746
Normal
0.3
162
Normal
0.3
114
Normal
0.3
955
Tumor
0.3
232
Normal
0.3
884
Normal
0.3
786
Normal
0.3
816
Normal
0.3
648
Normal
0.3
136
Normal
0.3
214
Normal
0.3
188
Normal
0.3
446
Normal
0.3
882
Normal
0.3
616
Normal
0.3
327
Tumor
0.3
564
Normal
0.3
146
Normal
0.3
864
Normal
0.3
394
Normal
0.3
428
Normal
0.3
698
Normal
0.3
126
Normal
0.3
756
Normal
0.3
464
Normal
0.3
664
Normal
0.3
448
Normal
0.3
354
Normal
0.3
127
Tumor
0.3
434
Normal
0.3
723
Tumor
0.3
411
Tumor
0.3
313
Tumor
0.3
286
Normal
0.3
356
Normal
0.3
858
Normal
0.3
344
Normal
0.3
124
Normal
0.3
662
Normal
0.3
952
Normal
0.3
878
Normal
0.3
392
Normal
0.3
868
Normal
0.3
468
Normal
0.3
568
Normal
0.3
722
Normal
0.3
416
Normal
0.3
514
Normal
0.3
332
Normal
0.2
661
Tumor
0.2
396
Normal
0.2
466
Normal
0.2
695
Tumor
0.2
744
Normal
0.2
1044
Normal
0.2
978
Normal
0.2
462
Normal
0.2
482
Normal
0.2
938
Normal
0.2
228
Normal
0.2
1046
Normal
0.2
628
Normal
0.2
424
Normal
0.2
217
Tumor
0.2
738
Normal
0.2
874
Normal
0.2
312
Normal
0.2
574
Normal
0.2
666
Normal
0.2
778
Normal
0.2
944
Normal
0.2
161
Tumor
0.2
966
Normal
0.2
745
Tumor
0.2
138
Normal
0.2
663
Tumor
0.2
1014
Normal
0.2
284
Normal
0.2
636
Normal
0.2
558
Normal
0.2
573
Tumor
0.2
716
Normal
0.2
926
Normal
0.2
1032
Normal
0.2
368
Normal
0.2
212
Normal
0.2
696
Normal
0.1
1027
Tumor
0.1
1016
Normal
0.1
617
Tumor
0.1
352
Normal
0.1
953
Tumor
0.1
364
Normal
0.1
461
Tumor
0.1
365
Tumor
0.1
515
Tumor
0.1
147
Tumor
0.1
257
Tumor
0.1
268
Normal
0.1
484
Normal
0.1
572
Normal
0.1
924
Normal
0.1
384
Normal
0.1
982
Normal
0.1
755
Tumor
0.1
867
Tumor
0.1
328
Normal
0.1
518
Normal
0.1
956
Normal
0.1
444
Normal
0.1
361
Tumor
0.1
213
Tumor
0.1
528
Normal
0.1
534
Normal
0.1
686
Normal
0.1
195
Tumor
0.1
445
Tumor
0.1
852
Normal
0.1
141
Tumor
0.1
142
Normal
0.1
728
Normal
0.1
922
Normal
0.1
861
Tumor
0.1
741
Tumor
0.1
964
Normal
0.1
412
Normal
0.1
451
Tumor
0.1
1042
Normal
0.1
413
Tumor
0.1
192
Normal
0.1
472
Normal
0.1
224
Normal
0.1
968
Normal
0.1
431
Tumor
0.1
185
Tumor
0.1
387
Tumor
0.0
341
Tumor
0.0
546
Normal
0.0
494
Normal
0.0
981
Tumor
0.0
488
Normal
0.0
873
Tumor
0.0
467
Tumor
0.0
557
Tumor
0.0
223
Tumor
0.0
277
Tumor
0.0
918
Normal
0.0
1028
Normal
0.0
383
Tumor
0.0
984
Normal
0.0
863
Tumor
0.0
112
Tumor
0.0
516
Normal
0.0
191
Tumor
0.0
954
Normal
0.0
131
Tumor
0.0
481
Tumor
0.0
976
Normal
0.0
851
Tumor
0.0
526
Normal
0.0
393
Tumor
0.0
957
Tumor
0.0
814
Normal
0.0
261
Tumor
0.0
672
Normal
0.0
474
Normal
0.0
721
Tumor
0.0
563
Tumor
0.0
1013
Tumor
0.0
647
Tumor
-0.1
435
Tumor
-0.1
1015
Tumor
-0.1
724
Normal
-0.1
145
Tumor
-0.1
815
Tumor
-0.1
911
Tumor
-0.1
123
Tumor
-0.1
857
Tumor
-0.1
865
Tumor
-0.1
443
Tumor
-0.1
433
Tumor
-0.1
187
Tumor
-0.1
135
Tumor
-0.1
357
Tumor
-0.1
465
Tumor
-0.1
271
Tumor
-0.1
227
Tumor
-0.1
1045
Tumor
-0.1
427
Tumor
-0.1
916
Normal
-0.1
375
Tumor
-0.1
785
Tumor
-0.1
665
Tumor
-0.1
1043
Tumor
-0.2
1021
Tumor
-0.2
958
Normal
-0.2
137
Tumor
-0.2
925
Tumor
-0.2
351
Tumor
-0.2
455
Tumor
-0.2
477
Tumor
-0.2
415
Tumor
-0.2
523
Tumor
-0.2
267
Tumor
-0.2
951
Tumor
-0.2
498
Normal
-0.2
421
Tumor
-0.2
554
Normal
-0.2
367
Tumor
-0.2
524
Normal
-0.2
125
Tumor
-0.2
478
Normal
-0.2
311
Tumor
-0.2
385
Tumor
-0.2
727
Tumor
-0.2
813
Tumor
-0.2
567
Tumor
-0.2
977
Tumor
-0.2
641
Tumor
-0.2
571
Tumor
-0.2
913
Tumor
-0.2
343
Tumor
-0.2
685
Tumor
-0.2
923
Tumor
-0.2
355
Tumor
-0.2
297
Tumor
-0.2
713
Tumor
-0.3
171
Tumor
-0.3
525
Tumor
-0.3
737
Tumor
-0.3
915
Tumor
-0.3
493
Tumor
-0.3
391
Tumor
-0.3
917
Tumor
-0.3
967
Tumor
-0.3
1031
Tumor
-0.3
517
Tumor
-0.3
881
Tumor
-0.3
715
Tumor
-0.3
363
Tumor
-0.3
943
Tumor
-0.3
395
Tumor
-0.3
231
Tumor
-0.3
487
Tumor
-0.3
492
Normal
-0.3
883
Tumor
-0.3
536
Normal
-0.3
447
Tumor
-0.4
823
Tumor
-0.4
425
Tumor
-0.4
538
Normal
-0.4
743
Tumor
-0.4
471
Tumor
-0.4
983
Tumor
-0.4
463
Tumor
-0.4
221
Tumor
-0.4
1041
Tumor
-0.4
1025
Tumor
-0.4
497
Tumor
-0.4
331
Tumor
-0.4
533
Tumor
-0.4
211
Tumor
-0.4
483
Tumor
-0.4
975
Tumor
-0.4
553
Tumor
-0.5
877
Tumor
-0.5
671
Tumor
-0.5
817
Tumor
-0.5
937
Tumor
-0.5
921
Tumor
-0.5
285
Tumor
-0.5
283
Tumor
-0.5
537
Tumor
-0.5
963
Tumor
-0.6
473
Tumor
-0.6
527
Tumor
-0.6
491
Tumor
-0.6
697
Tumor
-0.6
535
Tumor
-0.7
965
Tumor
-0.7
545
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
