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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPA3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
137.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
136.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
119.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
116.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
115.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
114.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
113.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
110.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
100.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
94.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
94.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
91.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
87.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
86.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
84.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
82.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
82.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
81.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
75.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
73.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
72.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
72.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
71.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
70.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
68.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
67.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
66.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
65.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
64.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
64.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
63.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
62.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
61.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
61.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
61.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
60.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
60.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
59.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
59.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
59.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
59.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
58.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
58.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
58.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
56.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
56.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
54.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
53.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
53.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
52.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
51.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
51.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
50.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
49.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
48.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
48.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
47.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
47.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
46.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
44.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
43.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
43.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
42.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
41.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
38.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
38.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
37.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
37.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
34.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
34.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPA3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
60.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
54.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
52.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
47.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
45.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.8
865
Tumor
0.8
965
Tumor
0.8
953
Tumor
0.7
343
Tumor
0.7
695
Tumor
0.7
313
Tumor
0.6
125
Tumor
0.6
277
Tumor
0.6
1013
Tumor
0.6
391
Tumor
0.6
663
Tumor
0.5
355
Tumor
0.5
283
Tumor
0.5
413
Tumor
0.5
465
Tumor
0.5
741
Tumor
0.4
427
Tumor
0.4
497
Tumor
0.4
661
Tumor
0.4
411
Tumor
0.4
141
Tumor
0.4
814
Normal
0.4
943
Tumor
0.3
375
Tumor
0.3
573
Tumor
0.3
487
Tumor
0.3
967
Tumor
0.3
727
Tumor
0.3
351
Tumor
0.3
863
Tumor
0.3
1027
Tumor
0.3
1021
Tumor
0.2
285
Tumor
0.2
724
Normal
0.2
367
Tumor
0.2
161
Tumor
0.2
491
Tumor
0.2
813
Tumor
0.2
815
Tumor
0.2
451
Tumor
0.2
951
Tumor
0.2
817
Tumor
0.2
261
Tumor
0.2
123
Tumor
0.2
388
Normal
0.2
527
Tumor
0.2
341
Tumor
0.1
387
Tumor
0.1
563
Tumor
0.1
938
Normal
0.1
977
Tumor
0.1
126
Normal
0.1
112
Tumor
0.1
571
Tumor
0.1
113
Tumor
0.1
211
Tumor
0.1
862
Normal
0.1
883
Tumor
0.1
431
Tumor
0.1
223
Tumor
0.1
383
Tumor
0.1
777
Tumor
0.1
877
Tumor
0.1
447
Tumor
0.1
434
Normal
0.1
192
Normal
0.1
914
Normal
0.1
923
Tumor
0.1
858
Normal
0.1
874
Normal
0.1
268
Normal
0.1
114
Normal
0.1
1022
Normal
0.1
861
Tumor
0.1
162
Normal
0.1
394
Normal
0.1
851
Tumor
0.1
1044
Normal
0.1
878
Normal
0.1
311
Tumor
0.1
463
Tumor
0.1
666
Normal
0.1
866
Normal
0.1
444
Normal
0.1
864
Normal
0.1
873
Tumor
0.1
721
Tumor
0.0
136
Normal
0.0
743
Tumor
0.0
966
Normal
0.0
755
Tumor
0.0
386
Normal
0.0
423
Tumor
0.0
984
Normal
0.0
698
Normal
0.0
881
Tumor
0.0
138
Normal
0.0
983
Tumor
0.0
462
Normal
0.0
536
Normal
0.0
124
Normal
0.0
396
Normal
0.0
664
Normal
0.0
392
Normal
0.0
1016
Normal
0.0
513
Tumor
0.0
357
Tumor
0.0
424
Normal
0.0
384
Normal
0.0
957
Tumor
0.0
738
Normal
0.0
924
Normal
0.0
662
Normal
0.0
955
Tumor
0.0
921
Tumor
0.0
344
Normal
0.0
365
Tumor
0.0
484
Normal
0.0
1031
Tumor
0.0
1028
Normal
0.0
937
Tumor
0.0
352
Normal
0.0
366
Normal
0.0
1032
Normal
0.0
514
Normal
0.0
188
Normal
0.0
746
Normal
0.0
737
Tumor
0.0
461
Tumor
0.0
213
Tumor
0.0
868
Normal
0.0
436
Normal
0.0
456
Normal
0.0
131
Tumor
0.0
778
Normal
0.0
455
Tumor
0.0
464
Normal
0.0
568
Normal
0.0
1014
Normal
0.0
526
Normal
0.0
362
Normal
0.0
917
Tumor
0.0
824
Normal
0.0
528
Normal
0.0
756
Normal
0.0
818
Normal
0.0
884
Normal
0.0
217
Tumor
0.0
852
Normal
0.0
954
Normal
0.0
944
Normal
-0.1
132
Normal
-0.1
786
Normal
-0.1
564
Normal
-0.1
148
Normal
-0.1
1026
Normal
-0.1
422
Normal
-0.1
137
Tumor
-0.1
647
Tumor
-0.1
978
Normal
-0.1
478
Normal
-0.1
278
Normal
-0.1
744
Normal
-0.1
857
Tumor
-0.1
426
Normal
-0.1
574
Normal
-0.1
368
Normal
-0.1
342
Normal
-0.1
915
Tumor
-0.1
186
Normal
-0.1
538
Normal
-0.1
981
Tumor
-0.1
376
Normal
-0.1
298
Normal
-0.1
916
Normal
-0.1
172
Normal
-0.1
272
Normal
-0.1
146
Normal
-0.1
956
Normal
-0.1
196
Normal
-0.1
516
Normal
-0.1
648
Normal
-0.1
665
Tumor
-0.1
448
Normal
-0.1
467
Tumor
-0.1
617
Tumor
-0.1
212
Normal
-0.1
816
Normal
-0.1
686
Normal
-0.1
1042
Normal
-0.1
142
Normal
-0.1
515
Tumor
-0.1
618
Normal
-0.1
446
Normal
-0.1
882
Normal
-0.1
358
Normal
-0.1
534
Normal
-0.1
127
Tumor
-0.1
913
Tumor
-0.1
385
Tumor
-0.1
968
Normal
-0.1
327
Tumor
-0.1
546
Normal
-0.1
716
Normal
-0.1
224
Normal
-0.1
258
Normal
-0.1
428
Normal
-0.1
452
Normal
-0.1
545
Tumor
-0.1
672
Normal
-0.1
572
Normal
-0.1
728
Normal
-0.1
111
Normal
-0.1
421
Tumor
-0.1
331
Tumor
-0.1
558
Normal
-0.1
128
Normal
-0.1
926
Normal
-0.1
535
Tumor
-0.1
918
Normal
-0.1
286
Normal
-0.1
912
Normal
-0.1
627
Tumor
-0.1
185
Tumor
-0.1
314
Normal
-0.1
494
Normal
-0.1
533
Tumor
-0.1
231
Tumor
-0.1
354
Normal
-0.1
1045
Tumor
-0.1
1015
Tumor
-0.1
433
Tumor
-0.1
488
Normal
-0.1
432
Normal
-0.1
723
Tumor
-0.1
715
Tumor
-0.1
493
Tumor
-0.2
1041
Tumor
-0.2
867
Tumor
-0.2
414
Normal
-0.2
628
Normal
-0.2
982
Normal
-0.2
284
Normal
-0.2
195
Tumor
-0.2
262
Normal
-0.2
468
Normal
-0.2
257
Tumor
-0.2
685
Tumor
-0.2
412
Normal
-0.2
952
Normal
-0.2
356
Normal
-0.2
445
Tumor
-0.2
498
Normal
-0.2
271
Tumor
-0.2
742
Normal
-0.2
553
Tumor
-0.2
332
Normal
-0.2
474
Normal
-0.2
518
Normal
-0.2
975
Tumor
-0.2
616
Normal
-0.2
1043
Tumor
-0.2
922
Normal
-0.2
714
Normal
-0.2
147
Tumor
-0.2
364
Normal
-0.2
785
Tumor
-0.2
416
Normal
-0.2
443
Tumor
-0.2
671
Tumor
-0.2
635
Tumor
-0.2
976
Normal
-0.2
911
Tumor
-0.2
227
Tumor
-0.2
472
Normal
-0.2
477
Tumor
-0.2
312
Normal
-0.2
958
Normal
-0.2
171
Tumor
-0.2
214
Normal
-0.2
567
Tumor
-0.2
222
Normal
-0.2
466
Normal
-0.2
524
Normal
-0.2
642
Normal
-0.2
1046
Normal
-0.2
492
Normal
-0.2
925
Tumor
-0.2
353
Tumor
-0.2
696
Normal
-0.2
297
Tumor
-0.2
361
Tumor
-0.2
713
Tumor
-0.2
823
Tumor
-0.3
267
Tumor
-0.3
328
Normal
-0.3
415
Tumor
-0.3
481
Tumor
-0.3
228
Normal
-0.3
218
Normal
-0.3
722
Normal
-0.3
964
Normal
-0.3
232
Normal
-0.3
615
Tumor
-0.3
483
Tumor
-0.3
395
Tumor
-0.3
482
Normal
-0.3
473
Tumor
-0.3
145
Tumor
-0.3
221
Tumor
-0.3
697
Tumor
-0.3
557
Tumor
-0.4
554
Normal
-0.4
523
Tumor
-0.4
963
Tumor
-0.4
636
Normal
-0.4
393
Tumor
-0.4
435
Tumor
-0.4
745
Tumor
-0.4
363
Tumor
-0.4
641
Tumor
-0.4
525
Tumor
-0.4
517
Tumor
-0.4
191
Tumor
-0.5
135
Tumor
-0.5
187
Tumor
-0.5
471
Tumor
-0.5
537
Tumor
-0.6
1025
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
