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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM5 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
54.6
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
49.8
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
43.7
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
42.5
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
38.0
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
37.8
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
37.7
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
37.4
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
36.0
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
35.8
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
35.6
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
34.2
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
33.9
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
33.4
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
33.3
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
33.2
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
31.8
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
31.8
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
31.2
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
31.0
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
31.0
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
30.9
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
30.5
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
30.4
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
29.6
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
29.1
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
28.6
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
28.5
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
28.3
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
28.2
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
28.2
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
27.9
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
27.2
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
26.7
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
26.6
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
25.2
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
24.5
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
24.5
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
24.1
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
24.0
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
22.6
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
21.5
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
21.1
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
20.4
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
18.9
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
18.8
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
17.8
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
17.6
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
17.5
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
15.9
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
15.3
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
14.2
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
13.4
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
12.3
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
12.1
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
10.3
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
9.2
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
8.6
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
7.4
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
6.8
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
5.0
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
4.5
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
2.5
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM5 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.7
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
240.6
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
212.9
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
111.3
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
101.2
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
98.2
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
95.7
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
90.8
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
85.7
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
85.3
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
83.6
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
79.6
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
78.3
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
78.1
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
77.9
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
75.1
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
74.8
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
74.8
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
73.1
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
73.0
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
72.8
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
72.6
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
72.4
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
72.0
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
70.9
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
70.7
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
68.2
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
67.7
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
67.4
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
67.2
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
67.2
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
67.1
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
66.8
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
66.1
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
66.1
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
65.9
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
65.8
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
65.2
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
63.2
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
63.0
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
62.9
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
62.2
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
62.0
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
61.8
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
61.3
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
60.7
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
60.7
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
60.4
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
60.1
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
60.0
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
59.7
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
59.2
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
59.1
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
59.1
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
58.7
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
58.6
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
58.6
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
58.4
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
58.4
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
57.3
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
57.2
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
56.8
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
56.6
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
56.5
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
56.0
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
56.0
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
55.6
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
55.4
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
55.2
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
55.2
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
55.1
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
54.8
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
54.4
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
54.3
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
54.3
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
54.1
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
53.9
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
53.3
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
53.2
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
53.2
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
53.1
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
53.1
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
52.8
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
52.8
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
52.7
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
52.1
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
52.0
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
52.0
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
51.8
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
51.4
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
51.4
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
51.3
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
51.2
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
51.1
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
51.0
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
50.9
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
50.8
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
50.7
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
50.3
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
50.0
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
50.0
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
50.0
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
49.9
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
49.7
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
49.6
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
49.5
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
49.2
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
49.2
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
49.1
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
49.0
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
49.0
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
48.9
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
48.7
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
48.7
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
48.6
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
48.5
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
48.4
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
48.3
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
48.3
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
48.0
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
48.0
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
47.9
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
47.9
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
47.7
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
47.7
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
47.5
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
47.4
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
47.3
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
47.2
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
47.2
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
47.0
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
46.8
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
46.7
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
46.4
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
46.3
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
46.1
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
46.1
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
46.1
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
46.1
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
46.1
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
46.0
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
45.8
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
45.7
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
45.6
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
45.6
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
45.5
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
45.4
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
45.4
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
45.1
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
45.1
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
45.1
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
44.9
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
44.7
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
44.7
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
44.6
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
44.6
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
44.6
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
44.6
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
44.5
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
44.5
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
44.3
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
44.2
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
44.2
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
44.2
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
44.2
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
44.0
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
44.0
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
43.9
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
43.9
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
43.9
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
43.9
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
43.8
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
43.8
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
43.7
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
43.7
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
43.5
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
43.4
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
43.3
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
43.2
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
43.0
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
42.9
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
42.8
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
42.8
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
42.8
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
42.8
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
42.7
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
42.7
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
42.4
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
42.4
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
42.3
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
42.3
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
42.2
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
42.2
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
42.1
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
41.9
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
41.9
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
41.9
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
41.8
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
41.8
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
41.8
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
41.7
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
41.7
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
41.6
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
41.5
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
41.5
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
41.4
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
41.4
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
41.4
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
41.2
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
41.1
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
41.1
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
40.8
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
40.8
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
40.7
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
40.7
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
40.6
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
40.6
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
40.6
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
40.5
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
40.5
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
40.5
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
40.4
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
40.4
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
40.3
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
40.3
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
40.2
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
40.1
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
40.1
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
40.0
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
39.9
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
39.9
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
39.9
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
39.8
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
39.8
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
39.8
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
39.7
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
39.7
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
39.6
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
39.5
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
39.5
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
39.4
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
39.3
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
39.2
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
39.2
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
39.2
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
39.1
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
39.0
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
39.0
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
39.0
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
39.0
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
38.8
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
38.8
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
38.7
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
38.6
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
38.5
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
38.4
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
38.4
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
38.4
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
38.3
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
38.1
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
38.1
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
38.1
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
37.8
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
37.8
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
37.7
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
37.7
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
37.7
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
37.6
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
37.6
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
37.6
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
37.6
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
37.5
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
37.5
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
37.3
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
37.3
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
37.2
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
37.1
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
37.1
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
37.0
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
36.9
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
36.9
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
36.9
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
36.9
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
36.9
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
36.9
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
36.9
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
36.9
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
36.8
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
36.8
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
36.7
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
36.6
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
36.5
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
36.5
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
36.4
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
36.4
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
36.3
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
36.3
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
36.2
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
36.2
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
36.2
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
36.2
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
36.1
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
36.1
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
36.0
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
36.0
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
36.0
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
35.9
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
35.9
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
35.8
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
35.8
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
35.8
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
35.8
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
35.8
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
35.7
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
35.7
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
35.7
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
35.7
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
35.7
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
35.5
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
35.5
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
35.5
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
35.5
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
35.4
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
35.4
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
35.4
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
35.4
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
35.3
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
35.3
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
35.3
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
35.3
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
35.2
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
35.1
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
35.1
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
35.0
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
35.0
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
35.0
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
34.9
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
34.9
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
34.9
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
34.8
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
34.8
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
34.8
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
34.8
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
34.7
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
34.6
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
34.6
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
34.6
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
34.5
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
34.5
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
34.5
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
34.4
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
34.3
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
34.3
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
34.2
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
34.2
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
34.2
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
34.1
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
34.0
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
34.0
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
34.0
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
34.0
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
33.9
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
33.9
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
33.8
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
33.8
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
33.7
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
33.7
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
33.6
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
33.6
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
33.6
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
33.6
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
33.6
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
33.5
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
33.5
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
33.5
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
33.3
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
33.3
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
33.3
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
33.2
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
33.1
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
33.0
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
32.9
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
32.8
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
32.8
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
32.8
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
32.8
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
32.7
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
32.7
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
32.7
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
32.6
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
32.6
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
32.5
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
32.4
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
32.4
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
32.4
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
32.4
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
32.3
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
32.3
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
32.3
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
32.2
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
32.2
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
32.1
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
32.1
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
32.0
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
32.0
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
32.0
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
32.0
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
32.0
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
31.9
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
31.9
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
31.9
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
31.6
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
31.6
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
31.5
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
31.5
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
31.4
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
31.4
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
31.3
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
31.3
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
31.3
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
31.3
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
31.0
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
30.9
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
30.9
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
30.9
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
30.9
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
30.9
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
30.8
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
30.8
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
30.8
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
30.7
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
30.4
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
30.3
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
30.3
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
30.2
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
30.2
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
30.1
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
30.1
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
30.1
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
30.0
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
29.9
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
29.9
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
29.8
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
29.8
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
29.8
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
29.8
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
29.7
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
29.7
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
29.6
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
29.6
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
29.6
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
29.4
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
29.4
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
29.3
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
29.2
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
29.2
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
29.2
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
29.1
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
29.0
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
28.8
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
28.8
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
28.5
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
28.3
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
28.3
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
28.1
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
27.9
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
27.7
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
27.7
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
27.7
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
27.6
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
27.6
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
27.4
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
27.3
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
27.3
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
27.2
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
27.1
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
27.0
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
26.9
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
26.8
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
26.8
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
26.8
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
26.7
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
26.6
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
26.6
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
26.5
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
26.5
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
26.5
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
26.2
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
25.7
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
25.5
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
25.5
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
25.2
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
25.1
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
24.7
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
24.5
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
24.4
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
24.2
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
24.2
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
24.1
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
23.6
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
23.6
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
23.5
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
23.3
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
23.1
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
22.9
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
22.7
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
21.9
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
21.6
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
21.4
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
21.4
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
21.2
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
21.0
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
20.7
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
20.7
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
19.7
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
19.1
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
18.7
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
18.3
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
16.6
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
15.7
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
13.7
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM5 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.8
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
133.5
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
119.3
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
115.1
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
104.7
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
89.3
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
80.7
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
72.5
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
71.2
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
70.3
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
67.7
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
67.3
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
66.1
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
66.1
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
66.0
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
65.4
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
63.2
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
61.8
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
61.4
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
59.5
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
59.1
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
58.8
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
58.7
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
57.1
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
57.0
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
56.9
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
56.4
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
56.3
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
56.2
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
55.4
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
55.0
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
55.0
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
53.8
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
53.3
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
53.2
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
53.1
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
52.8
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
52.0
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
51.9
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
51.8
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
51.8
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
50.3
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
50.3
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
50.3
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
50.2
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
50.0
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
49.8
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
49.5
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
49.4
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
49.4
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
49.4
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
48.5
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
48.4
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
47.6
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
47.2
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
47.0
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
46.8
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
46.7
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
46.6
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
46.3
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
46.2
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
45.6
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
45.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
45.5
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
45.4
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
45.3
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
45.2
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
45.0
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
44.7
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
44.5
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
44.3
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
44.0
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
43.5
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
42.9
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
42.8
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
42.2
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
42.1
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
41.7
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
41.6
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
40.9
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
40.8
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
40.4
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
40.4
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
40.0
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
38.3
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
38.3
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
37.6
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
37.0
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
37.0
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
36.5
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
36.0
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
34.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
32.8
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
32.6
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
31.7
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
31.6
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
31.2
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
30.9
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
30.5
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
23.4
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSM5 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.1
Number of samples
282
Samples
Sample
Description
TPM
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
179.2
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
119.1
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
115.3
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
112.6
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
110.4
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
107.7
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
100.7
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
99.4
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
97.2
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
96.2
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
90.8
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
83.6
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
80.9
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
78.1
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
78.0
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
77.8
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
77.5
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
77.3
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
75.8
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
75.2
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
75.0
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
74.6
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
73.5
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
72.3
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
72.0
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
70.6
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
70.5
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
70.3
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
70.2
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
70.1
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
69.9
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
68.9
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
68.4
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
68.3
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
68.1
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
68.1
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
68.1
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
67.9
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
67.6
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
67.5
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
67.5
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
67.1
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
65.9
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
65.0
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
64.6
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
63.8
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
63.4
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
62.8
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
62.6
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
61.9
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
61.7
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
61.6
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
61.6
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
61.5
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
61.5
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
61.4
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
61.2
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
60.8
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
60.7
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
60.6
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
59.9
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
59.8
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
59.4
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
59.4
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
59.3
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
58.9
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
57.9
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
57.3
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
57.1
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
56.8
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
56.5
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
56.5
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
55.0
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
54.6
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
54.4
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
54.1
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
54.1
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
53.6
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
53.5
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
53.5
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
53.5
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
52.8
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
52.4
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
52.3
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
52.1
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
51.6
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
51.6
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
51.3
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
51.3
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
51.2
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
51.0
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
51.0
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
50.9
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
50.5
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
50.4
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
50.4
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
50.4
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
50.3
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
50.0
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
50.0
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
49.6
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
49.3
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
49.3
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
49.3
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
48.8
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
48.5
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
47.9
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
47.6
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
46.8
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
46.8
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
46.4
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
46.2
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
46.2
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
46.0
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
45.9
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
45.7
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
45.6
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
44.7
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
44.7
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
44.6
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
44.5
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
44.5
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
44.5
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
44.4
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
44.2
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
44.1
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
44.0
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
43.6
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
43.4
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
43.3
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
43.3
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
43.3
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
43.0
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
42.8
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
42.7
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
42.7
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
42.5
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
42.5
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
42.5
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
42.5
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
42.5
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
42.2
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
42.2
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
42.0
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
42.0
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
42.0
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
41.8
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
41.6
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
41.6
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
41.1
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
41.0
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
40.9
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
40.8
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
40.7
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
40.7
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
40.6
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
40.1
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
39.8
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
39.8
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
39.8
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
39.5
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
39.4
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
39.3
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
39.1
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
39.0
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
38.9
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
38.5
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
38.4
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
37.6
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
37.5
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
37.2
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
37.1
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
37.0
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
36.7
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
36.7
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
36.5
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
36.4
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
36.3
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
35.9
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
35.8
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
35.8
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
35.6
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
35.6
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
35.5
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
35.3
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
34.6
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
34.5
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
34.5
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
33.9
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
33.8
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
33.3
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
33.2
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
32.9
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
32.9
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
32.7
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
32.6
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
32.6
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
32.4
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
32.3
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
32.1
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
31.9
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
31.9
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
31.3
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
31.1
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
31.1
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
30.9
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
30.7
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
30.0
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
29.9
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
29.8
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
29.5
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
29.2
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
29.2
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
29.1
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
28.7
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
28.5
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
28.1
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
27.8
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
27.6
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
27.2
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
27.1
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
27.0
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
26.8
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
25.8
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
25.7
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
25.4
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
25.4
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
25.3
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
25.2
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
24.6
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
24.5
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
24.2
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
24.0
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
24.0
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
23.8
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
23.6
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
23.6
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
23.6
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
23.5
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
23.0
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
22.7
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
22.1
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
21.7
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
21.6
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
21.3
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
21.3
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
20.8
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
20.7
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
20.4
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
20.0
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
19.1
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
19.1
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
19.0
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
18.7
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
18.4
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
18.0
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
17.6
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
17.1
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
17.1
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
16.8
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
15.7
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
14.0
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
11.4
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
10.4
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
10.3
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
10.1
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
9.3
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
8.4
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
7.7
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
7.2
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
7.1
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
6.4
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
6.2
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
6.1
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
5.4
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
5.3
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
3.9
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
3.7
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
3.6
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
3.3
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0084590001
Normal
1.8
CPT0006440003
Tumor
1.1
CPT0012570003
Normal
1.0
CPT0012770003
Normal
1.0
CPT0012900004
Tumor
0.8
CPT0012550003
Tumor
0.8
CPT0014450004
Tumor
0.6
CPT0009060003
Tumor
0.6
CPT0001220008
Tumor
0.6
CPT0017850003
Tumor
0.6
CPT0079180003
Tumor
0.6
CPT0017410003
Tumor
0.6
CPT0078930003
Tumor
0.6
CPT0011240003
Tumor
0.6
CPT0012080003
Tumor
0.5
CPT0089460004
Tumor
0.5
CPT0084560003
Tumor
0.5
CPT0078510003
Tumor
0.5
CPT0088760003
Tumor
0.5
CPT0007860003
Tumor
0.5
CPT0071150004
Tumor
0.4
CPT0012280003
Tumor
0.4
CPT0088550004
Tumor
0.4
CPT0012920003
Normal
0.4
CPT0009080003
Normal
0.4
CPT0014130001
Normal
0.4
CPT0001540009
Tumor
0.4
CPT0013790003
Normal
0.4
CPT0076330003
Tumor
0.4
CPT0082010001
Normal
0.4
CPT0026410003
Tumor
0.3
CPT0077140001
Normal
0.3
CPT0012370003
Tumor
0.3
CPT0006630003
Tumor
0.3
CPT0012090003
Normal
0.3
CPT0000780007
Tumor
0.3
CPT0025610001
Normal
0.3
CPT0081620001
Normal
0.3
CPT0081600003
Tumor
0.3
CPT0012180003
Tumor
0.3
CPT0015730003
Tumor
0.3
CPT0001190001
Normal
0.3
CPT0012670003
Tumor
0.3
CPT0009020003
Normal
0.3
CPT0069190001
Normal
0.3
CPT0088970003
Tumor
0.3
CPT0002270011
Tumor
0.3
CPT0025230003
Tumor
0.3
CPT0025920001
Normal
0.3
CPT0092310003
Normal
0.2
CPT0081880003
Tumor
0.2
CPT0086820003
Tumor
0.2
CPT0001230001
Normal
0.2
CPT0063330001
Normal
0.2
CPT0065430003
Tumor
0.2
CPT0077500001
Normal
0.2
CPT0014370004
Tumor
0.2
CPT0064370003
Tumor
0.2
CPT0063630003
Tumor
0.2
CPT0079270003
Tumor
0.2
CPT0077320001
Normal
0.2
CPT0014350001
Normal
0.2
CPT0065930003
Tumor
0.2
CPT0020120003
Tumor
0.2
CPT0000870016
Tumor
0.2
CPT0075570001
Normal
0.2
CPT0066470004
Tumor
0.2
CPT0018250001
Normal
0.2
CPT0088690003
Tumor
0.2
CPT0012290003
Normal
0.2
CPT0014470001
Normal
0.2
CPT0025290003
Tumor
0.2
CPT0010160003
Tumor
0.2
CPT0085670003
Tumor
0.2
CPT0086950003
Tumor
0.2
CPT0077490003
Tumor
0.2
CPT0065750003
Tumor
0.1
CPT0017450001
Normal
0.1
CPT0012640003
Normal
0.1
CPT0011410003
Tumor
0.1
CPT0092790003
Tumor
0.1
CPT0078530001
Normal
0.1
CPT0069000003
Tumor
0.1
CPT0078990003
Tumor
0.1
CPT0006900003
Tumor
0.1
CPT0088900003
Tumor
0.1
CPT0078840001
Normal
0.1
CPT0079430001
Normal
0.1
CPT0092160003
Tumor
0.1
CPT0088630003
Tumor
0.1
CPT0079000001
Normal
0.1
CPT0079300001
Normal
0.1
CPT0023360001
Normal
0.1
CPT0025170003
Tumor
0.1
CPT0010120001
Normal
0.1
CPT0025580004
Tumor
0.1
CPT0086030003
Tumor
0.1
CPT0019990003
Tumor
0.1
CPT0089480003
Normal
0.1
CPT0089020003
Tumor
0.1
CPT0023710001
Normal
0.1
CPT0069010001
Normal
0.0
CPT0002350011
Tumor
0.0
CPT0025880003
Tumor
0.0
CPT0079230003
Tumor
0.0
CPT0075720003
Tumor
0.0
CPT0000890001
Normal
0.0
CPT0021240003
Tumor
0.0
CPT0092190003
Normal
0.0
CPT0026420001
Normal
0.0
CPT0078670001
Normal
0.0
CPT0088570001
Normal
0.0
CPT0000640003
Tumor
0.0
CPT0009000003
Tumor
0.0
CPT0088500001
Normal
0.0
CPT0025050003
Tumor
0.0
CPT0076350001
Normal
0.0
CPT0023690003
Tumor
0.0
CPT0006730001
Normal
0.0
CPT0010110003
Tumor
0.0
CPT0078830003
Tumor
0.0
CPT0006950001
Normal
0.0
CPT0065690003
Tumor
0.0
CPT0019160001
Normal
0.0
CPT0007870001
Normal
0.0
CPT0088480003
Tumor
0.0
CPT0020130001
Normal
0.0
CPT0065810003
Tumor
0.0
CPT0087050003
Normal
0.0
CPT0007320003
Tumor
0.0
CPT0092730003
Tumor
0.0
CPT0081990003
Tumor
0.0
CPT0086370003
Normal
-0.1
CPT0025350003
Tumor
-0.1
CPT0000660001
Normal
-0.1
CPT0086360003
Tumor
-0.1
CPT0010170001
Normal
-0.1
CPT0019130003
Tumor
-0.1
CPT0015910003
Tumor
-0.1
CPT0086830003
Normal
-0.1
CPT0007470001
Normal
-0.1
CPT0001260009
Tumor
-0.1
CPT0078940001
Normal
-0.1
CPT0088710001
Normal
-0.1
CPT0001510001
Normal
-0.1
CPT0089040001
Normal
-0.1
CPT0001500009
Tumor
-0.1
CPT0088780001
Normal
-0.1
CPT0066430001
Normal
-0.1
CPT0066520001
Normal
-0.1
CPT0006530001
Normal
-0.1
CPT0063320003
Tumor
-0.1
CPT0077310003
Tumor
-0.1
CPT0086890003
Normal
-0.1
CPT0001350001
Normal
-0.1
CPT0064400001
Normal
-0.1
CPT0001340003
Tumor
-0.1
CPT0092740003
Normal
-0.1
CPT0025110003
Tumor
-0.2
CPT0002370001
Normal
-0.2
CPT0088920001
Normal
-0.2
CPT0078800003
Tumor
-0.2
CPT0088640003
Normal
-0.2
CPT0001270001
Normal
-0.2
CPT0079410003
Tumor
-0.2
CPT0075130003
Tumor
-0.2
CPT0025060001
Normal
-0.2
CPT0065870003
Tumor
-0.2
CPT0079380003
Tumor
-0.2
CPT0079480003
Tumor
-0.2
CPT0077110003
Tumor
-0.2
CPT0023350003
Tumor
-0.2
CPT0079510001
Normal
-0.2
CPT0092800003
Normal
-0.2
CPT0015810003
Tumor
-0.2
CPT0078660003
Tumor
-0.2
CPT0075170001
Normal
-0.2
CPT0065820001
Normal
-0.2
CPT0063640001
Normal
-0.2
CPT0086970003
Normal
-0.2
CPT0087040003
Tumor
-0.2
CPT0069160003
Tumor
-0.3
CPT0020020001
Normal
-0.3
CPT0065450001
Normal
-0.3
CPT0001550001
Normal
-0.3
CPT0086870003
Tumor
-0.3
CPT0000790001
Normal
-0.4
CPT0024670003
Tumor
-0.4
CPT0066480003
Tumor
-0.4
CPT0001180009
Tumor
-0.4
CPT0014160003
Tumor
-0.6
CPT0024680001
Normal
-0.8
CPT0075560003
Tumor
-1.2
CPT0092290003
Tumor
N/A
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
