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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TFR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
158.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1065.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
834.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
735.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
723.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
640.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
639.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
635.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
630.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
613.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
589.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
576.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
562.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
557.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
502.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
500.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
481.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
459.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
445.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
427.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
420.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
403.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
395.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
392.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
392.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
387.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
386.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
374.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
367.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
361.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
359.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
347.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
345.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
344.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
335.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
335.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
335.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
331.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
331.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
330.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
320.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
307.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
298.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
296.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
293.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
291.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
291.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
290.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
289.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
288.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
288.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
284.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
284.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
282.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
281.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
278.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
277.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
276.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
273.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
270.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
270.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
270.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
269.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
268.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
265.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
263.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
257.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
255.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
254.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
253.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
251.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
249.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
247.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
244.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
243.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
243.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
242.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
241.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
241.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
239.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
239.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
239.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
238.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
238.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
236.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
233.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
231.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
229.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
228.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
221.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
221.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
220.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
220.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
218.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
217.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
216.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
214.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
211.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
210.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
209.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
209.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
209.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
207.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
207.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
206.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
204.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
202.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
202.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
198.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
196.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
195.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
195.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
194.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
193.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
193.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
192.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
192.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
188.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
188.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
187.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
187.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
186.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
184.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
182.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
181.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
180.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
180.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
179.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
179.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
179.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
178.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
177.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
176.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
175.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
175.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
175.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
174.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
172.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
172.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
170.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
169.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
169.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
169.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
168.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
167.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
167.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
164.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
164.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
163.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
160.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
159.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
159.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
157.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
156.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
155.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
153.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
150.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
150.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
147.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
145.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
145.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
144.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
143.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
143.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
143.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
142.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
139.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
137.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
136.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
135.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
134.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
133.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
132.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
129.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
128.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
127.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
126.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
125.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
124.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
123.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
123.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
123.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
123.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
122.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
122.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
121.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
120.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
117.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
116.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
112.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
110.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
110.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
109.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
108.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
108.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
106.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
106.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
103.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
103.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
103.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
103.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
103.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
102.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
100.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
98.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
97.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
97.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
96.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
96.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
95.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
94.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
94.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
93.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
92.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
92.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
92.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
91.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
90.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
90.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
90.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
89.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
89.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
87.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
87.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
86.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
86.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
84.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
83.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
81.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
79.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
78.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
78.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
77.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
76.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
76.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
76.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
76.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
75.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
75.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
75.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
75.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
75.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
74.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
73.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
72.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
71.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
71.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
71.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
70.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
69.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
69.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
68.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
68.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
67.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
67.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
67.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
66.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
66.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
63.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
62.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
61.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
61.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
60.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
59.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
59.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
58.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
58.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
55.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
53.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
49.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
46.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
45.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
45.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
43.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
41.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
34.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
34.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TFR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
211.0
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
937.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
806.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
634.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
589.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
558.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
545.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
536.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
528.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
527.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
519.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
506.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
484.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
480.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
464.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
458.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
455.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
451.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
443.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
439.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
435.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
416.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
414.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
404.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
395.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
386.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
386.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
380.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
377.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
354.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
353.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
349.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
347.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
345.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
344.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
341.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
337.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
335.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
334.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
326.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
323.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
322.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
322.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
320.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
319.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
314.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
314.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
311.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
310.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
309.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
307.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
300.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
299.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
298.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
297.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
293.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
292.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
288.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
286.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
284.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
282.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
281.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
280.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
276.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
276.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
273.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
271.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
268.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
265.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
265.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
264.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
261.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
260.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
258.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
255.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
253.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
253.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
247.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
243.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
242.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
239.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
238.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
236.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
235.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
232.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
230.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
228.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
228.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
227.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
225.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
221.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
220.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
215.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
215.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
214.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
211.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
210.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
210.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
207.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
207.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
206.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
206.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
206.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
206.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
205.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
204.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
201.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
201.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
201.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
197.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
197.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
195.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
195.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
194.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
194.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
192.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
192.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
191.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
187.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
186.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
186.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
185.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
181.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
181.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
180.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
179.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
179.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
175.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
175.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
175.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
174.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
173.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
172.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
171.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
169.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
169.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
165.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
162.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
161.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
159.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
159.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
156.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
156.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
156.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
156.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
155.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
154.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
154.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
153.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
152.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
149.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
149.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
148.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
145.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
144.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
144.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
144.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
143.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
143.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
142.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
142.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
142.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
138.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
138.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
137.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
134.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
133.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
126.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
125.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
122.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
121.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
121.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
120.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
119.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
110.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
107.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
104.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
103.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
102.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
102.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
102.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
100.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
100.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
96.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
95.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
94.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
93.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
92.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
91.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
87.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
86.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
85.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
75.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
72.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
72.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
69.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
68.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
66.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
63.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
48.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
481
Tumor
1.4
863
Tumor
1.2
425
Tumor
1.2
755
Tumor
1.1
443
Tumor
1.0
361
Tumor
1.0
327
Tumor
1.0
756
Normal
1.0
278
Normal
0.8
471
Tumor
0.8
388
Normal
0.8
466
Normal
0.8
387
Tumor
0.7
187
Tumor
0.7
172
Normal
0.7
132
Normal
0.7
353
Tumor
0.7
162
Normal
0.7
328
Normal
0.7
665
Tumor
0.7
137
Tumor
0.7
428
Normal
0.7
186
Normal
0.6
1041
Tumor
0.6
648
Normal
0.6
356
Normal
0.6
314
Normal
0.6
146
Normal
0.6
742
Normal
0.6
394
Normal
0.6
364
Normal
0.6
452
Normal
0.6
616
Normal
0.6
868
Normal
0.6
354
Normal
0.6
482
Normal
0.6
636
Normal
0.6
358
Normal
0.6
873
Tumor
0.6
464
Normal
0.6
1042
Normal
0.5
635
Tumor
0.5
138
Normal
0.5
424
Normal
0.5
472
Normal
0.5
882
Normal
0.5
571
Tumor
0.5
145
Tumor
0.5
864
Normal
0.5
618
Normal
0.5
415
Tumor
0.5
878
Normal
0.5
937
Tumor
0.5
214
Normal
0.5
484
Normal
0.5
1022
Normal
0.4
432
Normal
0.4
628
Normal
0.4
257
Tumor
0.4
362
Normal
0.4
272
Normal
0.4
728
Normal
0.4
435
Tumor
0.4
462
Normal
0.4
1016
Normal
0.4
426
Normal
0.4
128
Normal
0.4
196
Normal
0.4
738
Normal
0.4
912
Normal
0.4
786
Normal
0.4
431
Tumor
0.4
148
Normal
0.4
258
Normal
0.4
222
Normal
0.4
824
Normal
0.4
564
Normal
0.4
224
Normal
0.4
493
Tumor
0.4
515
Tumor
0.4
191
Tumor
0.4
915
Tumor
0.4
572
Normal
0.3
342
Normal
0.3
696
Normal
0.3
436
Normal
0.3
926
Normal
0.3
615
Tumor
0.3
716
Normal
0.3
135
Tumor
0.3
955
Tumor
0.3
1045
Tumor
0.3
312
Normal
0.3
477
Tumor
0.3
647
Tumor
0.3
474
Normal
0.3
366
Normal
0.3
114
Normal
0.3
365
Tumor
0.3
267
Tumor
0.3
423
Tumor
0.3
938
Normal
0.3
413
Tumor
0.3
867
Tumor
0.3
666
Normal
0.3
414
Normal
0.3
416
Normal
0.3
277
Tumor
0.3
874
Normal
0.3
714
Normal
0.3
221
Tumor
0.3
261
Tumor
0.3
546
Normal
0.3
568
Normal
0.3
944
Normal
0.3
922
Normal
0.2
136
Normal
0.2
384
Normal
0.2
914
Normal
0.2
1032
Normal
0.2
456
Normal
0.2
722
Normal
0.2
445
Tumor
0.2
465
Tumor
0.2
298
Normal
0.2
968
Normal
0.2
227
Tumor
0.2
376
Normal
0.2
111
Normal
0.2
954
Normal
0.2
563
Tumor
0.2
713
Tumor
0.2
284
Normal
0.2
1014
Normal
0.2
516
Normal
0.2
412
Normal
0.2
411
Tumor
0.2
188
Normal
0.2
967
Tumor
0.2
517
Tumor
0.2
918
Normal
0.2
142
Normal
0.2
695
Tumor
0.2
271
Tumor
0.2
958
Normal
0.2
698
Normal
0.2
195
Tumor
0.2
1046
Normal
0.1
448
Normal
0.1
483
Tumor
0.1
911
Tumor
0.1
1031
Tumor
0.1
862
Normal
0.1
185
Tumor
0.1
223
Tumor
0.1
534
Normal
0.1
964
Normal
0.1
723
Tumor
0.1
518
Normal
0.1
393
Tumor
0.1
468
Normal
0.1
574
Normal
0.1
262
Normal
0.1
686
Normal
0.1
785
Tumor
0.1
741
Tumor
0.1
433
Tumor
0.1
422
Normal
0.1
664
Normal
0.1
126
Normal
0.1
617
Tumor
0.1
818
Normal
0.1
363
Tumor
0.1
478
Normal
0.1
956
Normal
0.1
444
Normal
0.1
1025
Tumor
0.1
721
Tumor
0.1
268
Normal
0.1
386
Normal
0.1
313
Tumor
0.0
1044
Normal
0.0
446
Normal
0.0
228
Normal
0.0
851
Tumor
0.0
778
Normal
0.0
913
Tumor
0.0
127
Tumor
0.0
884
Normal
0.0
823
Tumor
0.0
715
Tumor
0.0
981
Tumor
0.0
977
Tumor
0.0
816
Normal
0.0
858
Normal
0.0
368
Normal
0.0
494
Normal
0.0
978
Normal
0.0
112
Tumor
0.0
113
Tumor
-0.1
976
Normal
-0.1
527
Tumor
-0.1
662
Normal
-0.1
642
Normal
-0.1
514
Normal
-0.1
352
Normal
-0.1
123
Tumor
-0.1
1021
Tumor
-0.1
124
Normal
-0.1
951
Tumor
-0.1
232
Normal
-0.1
332
Normal
-0.1
1028
Normal
-0.1
744
Normal
-0.1
192
Normal
-0.1
343
Tumor
-0.1
746
Normal
-0.1
963
Tumor
-0.1
392
Normal
-0.2
218
Normal
-0.2
672
Normal
-0.2
213
Tumor
-0.2
1026
Normal
-0.2
852
Normal
-0.2
877
Tumor
-0.2
916
Normal
-0.2
212
Normal
-0.2
451
Tumor
-0.2
467
Tumor
-0.2
528
Normal
-0.2
344
Normal
-0.2
488
Normal
-0.3
558
Normal
-0.3
861
Tumor
-0.3
627
Tumor
-0.3
526
Normal
-0.3
463
Tumor
-0.3
524
Normal
-0.3
727
Tumor
-0.3
396
Normal
-0.3
357
Tumor
-0.3
286
Normal
-0.3
1043
Tumor
-0.3
385
Tumor
-0.3
813
Tumor
-0.3
641
Tumor
-0.3
866
Normal
-0.3
341
Tumor
-0.3
434
Normal
-0.3
545
Tumor
-0.3
161
Tumor
-0.3
147
Tumor
-0.3
383
Tumor
-0.3
984
Normal
-0.4
1015
Tumor
-0.4
924
Normal
-0.4
921
Tumor
-0.4
737
Tumor
-0.4
487
Tumor
-0.4
461
Tumor
-0.4
421
Tumor
-0.4
538
Normal
-0.4
492
Normal
-0.4
554
Normal
-0.4
697
Tumor
-0.4
497
Tumor
-0.4
217
Tumor
-0.4
513
Tumor
-0.4
131
Tumor
-0.5
573
Tumor
-0.5
857
Tumor
-0.5
523
Tumor
-0.5
982
Normal
-0.5
925
Tumor
-0.5
231
Tumor
-0.5
498
Normal
-0.5
533
Tumor
-0.5
553
Tumor
-0.5
983
Tumor
-0.5
1013
Tumor
-0.5
447
Tumor
-0.5
745
Tumor
-0.5
557
Tumor
-0.6
297
Tumor
-0.6
391
Tumor
-0.6
141
Tumor
-0.6
743
Tumor
-0.6
663
Tumor
-0.6
777
Tumor
-0.6
881
Tumor
-0.6
975
Tumor
-0.6
957
Tumor
-0.6
883
Tumor
-0.6
351
Tumor
-0.6
952
Normal
-0.6
473
Tumor
-0.7
171
Tumor
-0.7
965
Tumor
-0.7
455
Tumor
-0.7
355
Tumor
-0.7
814
Normal
-0.8
953
Tumor
-0.8
815
Tumor
-0.8
367
Tumor
-0.8
331
Tumor
-0.8
966
Normal
-0.8
375
Tumor
-0.8
943
Tumor
-0.8
536
Normal
-0.8
923
Tumor
-0.9
661
Tumor
-1.0
685
Tumor
-1.0
535
Tumor
-1.0
395
Tumor
-1.0
1027
Tumor
-1.0
567
Tumor
-1.1
525
Tumor
-1.1
125
Tumor
-1.1
817
Tumor
-1.1
671
Tumor
-1.1
724
Normal
-1.2
491
Tumor
-1.2
427
Tumor
-1.3
537
Tumor
-1.3
311
Tumor
-1.3
917
Tumor
-1.4
285
Tumor
-1.6
865
Tumor
-1.6
283
Tumor
-1.7
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.