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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZKSCAN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
36.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZKSCAN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
79.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
65.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
59.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
49.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
45.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.1
131
Tumor
2.0
411
Tumor
1.7
967
Tumor
1.3
977
Tumor
1.2
957
Tumor
1.2
445
Tumor
1.1
785
Tumor
1.1
425
Tumor
1.0
297
Tumor
1.0
351
Tumor
1.0
777
Tumor
0.9
865
Tumor
0.9
1013
Tumor
0.9
545
Tumor
0.8
965
Tumor
0.8
635
Tumor
0.8
355
Tumor
0.8
983
Tumor
0.8
365
Tumor
0.7
331
Tumor
0.7
473
Tumor
0.7
615
Tumor
0.7
1021
Tumor
0.7
497
Tumor
0.7
921
Tumor
0.7
1031
Tumor
0.7
647
Tumor
0.7
727
Tumor
0.7
271
Tumor
0.7
533
Tumor
0.7
911
Tumor
0.7
481
Tumor
0.7
755
Tumor
0.6
487
Tumor
0.6
553
Tumor
0.6
361
Tumor
0.6
483
Tumor
0.6
451
Tumor
0.6
161
Tumor
0.6
431
Tumor
0.6
975
Tumor
0.6
915
Tumor
0.6
515
Tumor
0.6
737
Tumor
0.6
715
Tumor
0.6
327
Tumor
0.6
917
Tumor
0.6
881
Tumor
0.5
277
Tumor
0.5
867
Tumor
0.5
813
Tumor
0.5
477
Tumor
0.5
171
Tumor
0.5
517
Tumor
0.5
523
Tumor
0.4
484
Normal
0.4
471
Tumor
0.4
493
Tumor
0.4
231
Tumor
0.4
912
Normal
0.4
357
Tumor
0.4
465
Tumor
0.4
415
Tumor
0.4
863
Tumor
0.4
877
Tumor
0.4
527
Tumor
0.4
567
Tumor
0.4
741
Tumor
0.3
953
Tumor
0.3
1041
Tumor
0.3
467
Tumor
0.3
814
Normal
0.3
423
Tumor
0.3
671
Tumor
0.3
951
Tumor
0.3
463
Tumor
0.3
435
Tumor
0.3
955
Tumor
0.3
858
Normal
0.3
636
Normal
0.3
641
Tumor
0.3
695
Tumor
0.3
744
Normal
0.3
393
Tumor
0.2
447
Tumor
0.2
883
Tumor
0.2
452
Normal
0.2
666
Normal
0.2
478
Normal
0.2
1043
Tumor
0.2
213
Tumor
0.2
498
Normal
0.2
147
Tumor
0.2
818
Normal
0.2
714
Normal
0.2
392
Normal
0.2
1025
Tumor
0.2
884
Normal
0.2
211
Tumor
0.2
963
Tumor
0.2
456
Normal
0.2
341
Tumor
0.2
375
Tumor
0.2
778
Normal
0.2
443
Tumor
0.2
944
Normal
0.2
958
Normal
0.2
257
Tumor
0.2
162
Normal
0.2
427
Tumor
0.2
964
Normal
0.2
328
Normal
0.2
387
Tumor
0.1
746
Normal
0.1
455
Tumor
0.1
298
Normal
0.1
954
Normal
0.1
924
Normal
0.1
524
Normal
0.1
878
Normal
0.1
396
Normal
0.1
385
Tumor
0.1
554
Normal
0.1
516
Normal
0.1
938
Normal
0.1
1046
Normal
0.1
952
Normal
0.1
267
Tumor
0.1
742
Normal
0.1
221
Tumor
0.1
1022
Normal
0.1
943
Tumor
0.1
394
Normal
0.1
492
Normal
0.1
1027
Tumor
0.1
433
Tumor
0.1
756
Normal
0.1
488
Normal
0.1
284
Normal
0.1
444
Normal
0.1
937
Tumor
0.1
285
Tumor
0.1
534
Normal
0.1
882
Normal
0.1
862
Normal
0.1
866
Normal
0.1
824
Normal
0.1
142
Normal
0.1
716
Normal
0.1
538
Normal
0.1
426
Normal
0.1
472
Normal
0.1
468
Normal
0.1
464
Normal
0.0
187
Tumor
0.0
1015
Tumor
0.0
685
Tumor
0.0
261
Tumor
0.0
966
Normal
0.0
864
Normal
0.0
127
Tumor
0.0
857
Tumor
0.0
448
Normal
0.0
436
Normal
0.0
616
Normal
0.0
364
Normal
0.0
258
Normal
0.0
412
Normal
0.0
786
Normal
0.0
563
Tumor
0.0
386
Normal
0.0
1014
Normal
0.0
482
Normal
0.0
1032
Normal
0.0
354
Normal
0.0
518
Normal
0.0
663
Tumor
0.0
696
Normal
0.0
923
Tumor
0.0
546
Normal
0.0
968
Normal
0.0
672
Normal
0.0
388
Normal
0.0
698
Normal
0.0
724
Normal
0.0
141
Tumor
0.0
861
Tumor
0.0
628
Normal
0.0
642
Normal
0.0
874
Normal
0.0
461
Tumor
0.0
661
Tumor
0.0
873
Tumor
0.0
424
Normal
0.0
376
Normal
0.0
446
Normal
0.0
123
Tumor
-0.1
272
Normal
-0.1
926
Normal
-0.1
664
Normal
-0.1
574
Normal
-0.1
148
Normal
-0.1
191
Tumor
-0.1
526
Normal
-0.1
648
Normal
-0.1
823
Tumor
-0.1
186
Normal
-0.1
1044
Normal
-0.1
195
Tumor
-0.1
413
Tumor
-0.1
697
Tumor
-0.1
956
Normal
-0.1
188
Normal
-0.1
918
Normal
-0.1
313
Tumor
-0.1
662
Normal
-0.1
1042
Normal
-0.1
312
Normal
-0.1
1026
Normal
-0.1
466
Normal
-0.1
728
Normal
-0.1
686
Normal
-0.1
286
Normal
-0.1
868
Normal
-0.1
414
Normal
-0.1
914
Normal
-0.1
922
Normal
-0.1
528
Normal
-0.1
366
Normal
-0.1
494
Normal
-0.1
416
Normal
-0.1
852
Normal
-0.1
428
Normal
-0.1
568
Normal
-0.1
665
Tumor
-0.1
558
Normal
-0.1
434
Normal
-0.1
916
Normal
-0.1
815
Tumor
-0.1
132
Normal
-0.1
232
Normal
-0.1
138
Normal
-0.1
536
Normal
-0.1
278
Normal
-0.1
618
Normal
-0.1
982
Normal
-0.1
384
Normal
-0.1
564
Normal
-0.2
976
Normal
-0.2
228
Normal
-0.2
185
Tumor
-0.2
383
Tumor
-0.2
422
Normal
-0.2
627
Tumor
-0.2
721
Tumor
-0.2
572
Normal
-0.2
362
Normal
-0.2
851
Tumor
-0.2
738
Normal
-0.2
146
Normal
-0.2
368
Normal
-0.2
224
Normal
-0.2
353
Tumor
-0.2
491
Tumor
-0.2
816
Normal
-0.2
984
Normal
-0.2
571
Tumor
-0.2
262
Normal
-0.2
268
Normal
-0.2
344
Normal
-0.2
352
Normal
-0.2
474
Normal
-0.2
913
Tumor
-0.2
391
Tumor
-0.2
723
Tumor
-0.2
462
Normal
-0.2
514
Normal
-0.2
1016
Normal
-0.2
136
Normal
-0.2
124
Normal
-0.2
172
Normal
-0.3
212
Normal
-0.3
432
Normal
-0.3
978
Normal
-0.3
113
Tumor
-0.3
713
Tumor
-0.3
535
Tumor
-0.3
722
Normal
-0.3
332
Normal
-0.3
513
Tumor
-0.3
223
Tumor
-0.3
314
Normal
-0.3
573
Tumor
-0.3
128
Normal
-0.3
1028
Normal
-0.3
1045
Tumor
-0.3
617
Tumor
-0.3
137
Tumor
-0.3
192
Normal
-0.3
217
Tumor
-0.3
222
Normal
-0.3
356
Normal
-0.3
342
Normal
-0.3
367
Tumor
-0.4
218
Normal
-0.4
817
Tumor
-0.4
196
Normal
-0.4
283
Tumor
-0.4
114
Normal
-0.4
557
Tumor
-0.4
311
Tumor
-0.4
358
Normal
-0.4
395
Tumor
-0.4
214
Normal
-0.5
145
Tumor
-0.5
981
Tumor
-0.5
525
Tumor
-0.5
925
Tumor
-0.6
111
Normal
-0.6
745
Tumor
-0.6
135
Tumor
-0.6
126
Normal
-0.6
421
Tumor
-0.6
227
Tumor
-0.7
537
Tumor
-0.8
112
Tumor
-0.8
343
Tumor
-0.9
125
Tumor
-1.2
363
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
