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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BUD31 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
671.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
139.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
127.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
121.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
119.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
116.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
112.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
111.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
106.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
102.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
98.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
97.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
97.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
95.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
94.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
91.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
88.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
87.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
87.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
87.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
86.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
85.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
85.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
81.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
79.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
78.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
77.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
76.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
76.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
75.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
73.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
71.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
70.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
70.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
69.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
69.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
65.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
65.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
65.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
65.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
63.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
63.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
63.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
63.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
62.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
62.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
61.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
60.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
59.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
58.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
56.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
55.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
55.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
55.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
54.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
53.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
53.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
52.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
51.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
51.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
51.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
51.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
50.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
50.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
49.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
49.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
49.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
49.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
48.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
48.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
48.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
48.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
45.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
45.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
45.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
44.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
44.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
43.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
42.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
42.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
39.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
39.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
38.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
37.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
37.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
35.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
35.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
33.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
32.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
32.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
31.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
23.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BUD31 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.9
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
538.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
161.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
143.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
130.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
129.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
129.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
128.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
101.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
98.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
97.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
95.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
93.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
91.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
89.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
88.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
86.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
83.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
82.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
82.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
80.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
79.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
78.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
77.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
75.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
74.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
74.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
73.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
73.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
72.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
72.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
70.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
68.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
67.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
67.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
66.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
65.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
63.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
62.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
62.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
62.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
59.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
59.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
58.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
58.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
58.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
57.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
56.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
56.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
55.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
54.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
52.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
52.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
52.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
51.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
51.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
51.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
50.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
50.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
49.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
47.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
46.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
45.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
45.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
45.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
43.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
43.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
43.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
42.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
42.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
41.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
41.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
40.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
39.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
39.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.3
473
Tumor
1.3
965
Tumor
1.2
743
Tumor
1.2
951
Tumor
1.2
425
Tumor
1.2
497
Tumor
1.1
535
Tumor
1.0
387
Tumor
0.9
375
Tumor
0.8
727
Tumor
0.8
983
Tumor
0.8
211
Tumor
0.8
351
Tumor
0.8
385
Tumor
0.7
313
Tumor
0.7
367
Tumor
0.7
483
Tumor
0.7
537
Tumor
0.7
1013
Tumor
0.7
977
Tumor
0.7
635
Tumor
0.7
123
Tumor
0.6
271
Tumor
0.6
355
Tumor
0.6
331
Tumor
0.6
921
Tumor
0.6
1031
Tumor
0.6
285
Tumor
0.6
131
Tumor
0.6
357
Tumor
0.6
477
Tumor
0.6
937
Tumor
0.6
487
Tumor
0.6
141
Tumor
0.6
697
Tumor
0.6
297
Tumor
0.6
553
Tumor
0.6
545
Tumor
0.5
536
Normal
0.5
517
Tumor
0.5
1021
Tumor
0.5
661
Tumor
0.5
957
Tumor
0.5
257
Tumor
0.5
877
Tumor
0.5
695
Tumor
0.5
533
Tumor
0.5
277
Tumor
0.5
823
Tumor
0.5
724
Normal
0.5
865
Tumor
0.5
493
Tumor
0.5
343
Tumor
0.5
431
Tumor
0.5
925
Tumor
0.5
737
Tumor
0.5
231
Tumor
0.5
455
Tumor
0.4
1025
Tumor
0.4
341
Tumor
0.4
411
Tumor
0.4
463
Tumor
0.4
161
Tumor
0.4
267
Tumor
0.4
171
Tumor
0.4
471
Tumor
0.4
135
Tumor
0.4
261
Tumor
0.4
527
Tumor
0.3
365
Tumor
0.3
361
Tumor
0.3
881
Tumor
0.3
447
Tumor
0.3
227
Tumor
0.3
923
Tumor
0.3
883
Tumor
0.3
283
Tumor
0.3
465
Tumor
0.3
427
Tumor
0.3
554
Normal
0.3
137
Tumor
0.3
467
Tumor
0.3
975
Tumor
0.3
963
Tumor
0.3
755
Tumor
0.3
391
Tumor
0.3
395
Tumor
0.2
221
Tumor
0.2
1027
Tumor
0.2
383
Tumor
0.2
538
Normal
0.2
943
Tumor
0.2
917
Tumor
0.2
741
Tumor
0.2
715
Tumor
0.2
615
Tumor
0.2
217
Tumor
0.2
213
Tumor
0.2
393
Tumor
0.2
311
Tumor
0.2
413
Tumor
0.2
232
Normal
0.2
415
Tumor
0.2
491
Tumor
0.2
445
Tumor
0.2
817
Tumor
0.2
492
Normal
0.2
435
Tumor
0.2
368
Normal
0.2
1015
Tumor
0.2
647
Tumor
0.2
573
Tumor
0.2
1041
Tumor
0.2
915
Tumor
0.2
352
Normal
0.1
125
Tumor
0.1
443
Tumor
0.1
112
Tumor
0.1
481
Tumor
0.1
478
Normal
0.1
423
Tumor
0.1
685
Tumor
0.1
785
Tumor
0.1
451
Tumor
0.1
953
Tumor
0.1
981
Tumor
0.1
516
Normal
0.1
268
Normal
0.1
363
Tumor
0.1
567
Tumor
0.1
344
Normal
0.1
113
Tumor
0.1
223
Tumor
0.1
461
Tumor
0.1
342
Normal
0.1
185
Tumor
0.1
386
Normal
0.1
777
Tumor
0.0
1045
Tumor
0.0
366
Normal
0.0
388
Normal
0.0
857
Tumor
0.0
813
Tumor
0.0
127
Tumor
0.0
523
Tumor
0.0
353
Tumor
0.0
147
Tumor
0.0
617
Tumor
0.0
524
Normal
0.0
358
Normal
0.0
641
Tumor
0.0
433
Tumor
0.0
298
Normal
N/A
713
Tumor
0.0
571
Tumor
0.0
618
Normal
0.0
484
Normal
0.0
446
Normal
0.0
362
Normal
0.0
436
Normal
0.0
1043
Tumor
0.0
434
Normal
0.0
721
Tumor
-0.1
272
Normal
-0.1
126
Normal
-0.1
394
Normal
-0.1
376
Normal
-0.1
488
Normal
-0.1
392
Normal
-0.1
911
Tumor
-0.1
432
Normal
-0.1
187
Tumor
-0.1
861
Tumor
-0.1
396
Normal
-0.1
494
Normal
-0.1
671
Tumor
-0.1
262
Normal
-0.1
863
Tumor
-0.1
412
Normal
-0.1
191
Tumor
-0.1
515
Tumor
-0.1
984
Normal
-0.1
546
Normal
-0.1
636
Normal
-0.1
663
Tumor
-0.1
426
Normal
-0.1
686
Normal
-0.1
955
Tumor
-0.1
136
Normal
-0.1
258
Normal
-0.1
716
Normal
-0.1
867
Tumor
-0.1
354
Normal
-0.1
332
Normal
-0.1
414
Normal
-0.1
814
Normal
-0.1
913
Tumor
-0.1
966
Normal
-0.1
815
Tumor
-0.1
472
Normal
-0.1
952
Normal
-0.1
498
Normal
-0.1
746
Normal
-0.2
851
Tumor
-0.2
474
Normal
-0.2
146
Normal
-0.2
513
Tumor
-0.2
444
Normal
-0.2
195
Tumor
-0.2
132
Normal
-0.2
328
Normal
-0.2
534
Normal
-0.2
356
Normal
-0.2
138
Normal
-0.2
1014
Normal
-0.2
466
Normal
-0.2
456
Normal
-0.2
557
Tumor
-0.2
873
Tumor
-0.2
421
Tumor
-0.2
878
Normal
-0.2
978
Normal
-0.2
128
Normal
-0.2
114
Normal
-0.2
744
Normal
-0.2
364
Normal
-0.2
196
Normal
-0.2
452
Normal
-0.2
124
Normal
-0.2
852
Normal
-0.2
525
Tumor
-0.2
514
Normal
-0.2
312
Normal
-0.2
188
Normal
-0.2
628
Normal
-0.2
642
Normal
-0.2
448
Normal
-0.2
222
Normal
-0.2
422
Normal
-0.3
482
Normal
-0.3
916
Normal
-0.3
518
Normal
-0.3
314
Normal
-0.3
218
Normal
-0.3
111
Normal
-0.3
468
Normal
-0.3
1028
Normal
-0.3
142
Normal
-0.3
738
Normal
-0.3
192
Normal
-0.3
384
Normal
-0.3
922
Normal
-0.3
464
Normal
-0.3
162
Normal
-0.3
145
Tumor
-0.3
756
Normal
-0.3
214
Normal
-0.3
526
Normal
-0.3
982
Normal
-0.3
954
Normal
-0.3
428
Normal
-0.3
278
Normal
-0.3
944
Normal
-0.3
148
Normal
-0.3
558
Normal
-0.3
665
Tumor
-0.3
424
Normal
-0.3
714
Normal
-0.3
648
Normal
-0.3
786
Normal
-0.3
212
Normal
-0.3
778
Normal
-0.3
938
Normal
-0.3
186
Normal
-0.3
284
Normal
-0.3
416
Normal
-0.4
976
Normal
-0.4
572
Normal
-0.4
696
Normal
-0.4
914
Normal
-0.4
672
Normal
-0.4
616
Normal
-0.4
462
Normal
-0.4
858
Normal
-0.4
723
Tumor
-0.4
627
Tumor
-0.4
1022
Normal
-0.4
662
Normal
-0.4
228
Normal
-0.4
568
Normal
-0.4
224
Normal
-0.4
1016
Normal
-0.4
574
Normal
-0.4
742
Normal
-0.4
728
Normal
-0.4
172
Normal
-0.4
564
Normal
-0.4
1026
Normal
-0.4
968
Normal
-0.4
563
Tumor
-0.4
698
Normal
-0.4
964
Normal
-0.4
862
Normal
-0.4
882
Normal
-0.5
528
Normal
-0.5
745
Tumor
-0.5
286
Normal
-0.5
1044
Normal
-0.5
327
Tumor
-0.5
874
Normal
-0.5
884
Normal
-0.5
912
Normal
-0.5
722
Normal
-0.5
1032
Normal
-0.5
664
Normal
-0.5
818
Normal
-0.5
958
Normal
-0.5
864
Normal
-0.5
924
Normal
-0.5
926
Normal
-0.5
918
Normal
-0.6
1046
Normal
-0.6
866
Normal
-0.6
824
Normal
-0.6
816
Normal
-0.6
956
Normal
-0.6
868
Normal
-0.6
1042
Normal
-0.6
666
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
