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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPB1 is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1955.3
Number of samples
349
Samples
Sample
Description
TPM
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
11093.2
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
9762.3
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
7944.7
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
6896.8
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
6590.9
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
5632.9
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
5458.6
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
5419.8
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
5314.4
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
4922.4
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
4816.2
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
4764.5
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
4725.8
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
4720.3
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
4631.4
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
4595.8
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
4450.0
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
4440.0
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
4378.1
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
4343.3
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
4107.5
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
4089.5
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
3951.9
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
3904.3
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
3902.1
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
3871.1
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
3785.2
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
3689.0
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
3687.3
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
3616.1
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
3494.7
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
3437.4
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
3431.2
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
3393.8
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
3363.3
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
3260.4
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
3242.9
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
3231.7
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
3227.1
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
3189.8
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
3087.5
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
2996.8
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
2987.9
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
2979.6
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
2907.0
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
2864.4
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
2849.1
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
2838.5
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
2828.1
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
2807.2
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
2804.6
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
2793.9
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
2756.2
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
2688.2
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
2685.2
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
2671.8
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
2627.0
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
2601.2
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
2594.1
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
2568.8
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
2566.4
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
2562.5
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
2537.0
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
2536.7
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
2528.5
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
2526.3
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
2514.4
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
2506.8
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
2496.4
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
2493.6
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
2487.1
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
2468.3
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
2468.3
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
2466.3
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
2464.0
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
2447.4
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
2446.1
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
2429.5
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
2419.0
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
2391.8
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
2391.6
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
2378.1
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
2375.8
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
2374.7
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
2355.4
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
2345.9
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
2338.0
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
2329.3
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
2323.5
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
2307.7
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
2292.9
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
2289.6
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
2262.7
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
2252.3
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
2246.0
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
2233.8
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
2229.6
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
2212.3
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
2202.3
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
2199.7
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
2198.5
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
2191.1
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
2190.6
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
2189.9
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
2173.1
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
2168.3
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
2162.1
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
2150.4
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
2139.5
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
2128.1
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
2126.5
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
2103.7
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
2088.0
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
2080.3
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
2078.7
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
2075.7
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
2075.3
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
2074.3
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
2072.2
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
2071.1
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
2057.5
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
2055.5
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
2054.3
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
2046.2
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
2045.1
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
2039.3
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
2033.4
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
2011.5
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
2011.0
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
1998.4
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
1987.8
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
1986.0
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
1984.7
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
1983.8
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
1979.0
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
1958.1
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
1957.8
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
1957.5
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
1953.6
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
1951.2
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
1940.3
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
1932.8
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
1922.5
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
1912.1
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
1911.6
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
1908.7
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
1906.8
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
1900.7
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
1888.0
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
1880.1
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
1857.7
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
1854.8
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
1850.1
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
1848.1
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
1847.3
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
1844.2
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
1843.4
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
1834.8
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
1821.0
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
1819.5
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
1817.2
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
1809.2
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
1803.9
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
1797.2
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
1797.0
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
1796.3
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
1794.5
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
1793.6
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
1790.4
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
1787.6
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
1773.6
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
1747.6
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
1736.8
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
1735.3
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
1732.0
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
1729.7
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
1712.8
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
1711.8
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
1711.1
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
1701.7
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
1690.5
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
1669.6
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
1666.3
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
1660.7
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
1651.3
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
1647.1
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
1637.9
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
1623.8
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
1619.6
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
1619.4
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
1586.5
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
1576.8
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1559.8
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
1557.9
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
1553.0
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
1552.9
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
1548.6
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
1543.4
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
1535.1
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
1533.0
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
1532.8
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
1530.9
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
1525.1
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
1516.9
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
1512.5
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
1507.6
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
1505.3
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
1497.6
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
1483.5
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
1466.7
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
1466.7
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
1428.6
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
1425.7
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
1423.1
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
1413.7
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
1412.5
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
1408.4
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
1404.7
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
1398.5
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
1391.7
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
1379.9
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
1379.2
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
1359.5
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
1350.1
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
1348.5
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
1345.8
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
1341.9
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
1337.9
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
1330.3
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
1326.8
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
1314.0
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1310.0
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
1308.3
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
1301.0
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
1292.9
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
1285.3
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
1281.3
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
1277.6
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
1272.1
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
1272.0
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
1268.9
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
1265.6
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
1263.3
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
1260.4
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
1253.7
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
1239.8
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
1236.1
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
1233.7
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
1228.5
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
1218.3
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1216.3
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
1213.1
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
1198.8
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
1196.2
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
1193.5
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
1192.9
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
1192.2
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
1189.4
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
1183.3
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
1171.6
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
1157.8
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
1155.9
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
1133.9
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
1132.4
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
1112.5
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
1112.1
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
1106.8
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
1102.3
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
1096.0
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
1094.7
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
1092.7
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
1090.1
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
1089.1
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
1085.7
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
1083.1
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
1067.5
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
1064.9
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
1055.4
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
1049.2
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
1048.5
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
1045.7
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
1043.0
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
1040.4
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
1036.1
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
1028.3
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
1021.4
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
1017.2
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
1011.4
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
989.6
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
988.0
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
985.6
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
969.4
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
965.7
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
965.1
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
963.2
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
948.1
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
947.4
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
924.3
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
922.5
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
921.5
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
919.2
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
911.5
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
910.5
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
906.2
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
905.1
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
901.6
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
900.1
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
885.4
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
875.7
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
861.5
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
849.3
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
842.0
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
823.1
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
818.8
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
806.4
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
802.6
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
786.2
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
780.7
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
774.1
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
771.0
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
764.2
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
734.5
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
729.1
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
723.7
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
709.0
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
708.6
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
707.6
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
706.2
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
705.9
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
705.0
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
699.4
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
699.0
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
686.2
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
669.0
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
653.9
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
645.1
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
640.4
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
637.8
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
633.4
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
622.8
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
612.5
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
593.2
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
564.5
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
557.4
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
397.4
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
360.2
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
344.6
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
310.8
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPB1 is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1129.4
Number of samples
81
Samples
Sample
Description
TPM
DO46333
0 years, female, NA, stage:III, dead, 359 days
8922.8
DO46366
0 years, female, NA, stage:III, dead, 2054 days
5809.8
DO46538
0 years, female, NA, stage:III, dead, 1527 days
4384.4
DO46453
0 years, female, NA, stage:III, dead, 3294 days
4071.5
DO46611
0 years, female, NA, stage:III, dead, 734 days
2800.4
DO46350
0 years, female, NA, stage:III, dead, 886 days
2343.1
DO46331
0 years, female, NA, stage:III, dead, 612 days
1840.9
DO46586
0 years, female, NA, stage:III, dead, 1019 days
1670.6
DO46581
0 years, female, NA, stage:III, dead, 408 days
1670.6
DO46329
0 years, female, NA, stage:III, dead, 1699 days
1577.6
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
1574.9
DO46352
0 years, female, NA, stage:III, dead, 677 days
1570.0
DO46448
0 years, female, NA, stage:III, dead, 654 days
1513.9
DO46370
0 years, female, NA, stage:III, dead, 1727 days
1473.9
DO46546
0 years, female, NA, stage:III, dead, 1889 days
1466.2
DO46372
0 years, female, NA, stage:III, dead, 1326 days
1428.7
DO46342
0 years, female, NA, stage:III, dead, 1398 days
1406.7
DO46356
0 years, female, NA, stage:III, dead, 911 days
1336.1
DO46591
0 years, female, NA, stage:III, dead, 195 days
1287.2
DO46368
0 years, female, NA, stage:III, dead, 2879 days
1183.3
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
1169.5
DO46374
0 years, female, NA, stage:III, dead, 1409 days
1151.8
DO46597
0 years, female, NA, stage:III, dead, 393 days
1144.0
DO46344
0 years, female, NA, stage:III, dead, 642 days
1135.4
DO46412
0 years, female, NA, stage:III, dead, 597 days
1134.8
DO46390
0 years, female, NA, stage:III, dead, 374 days
1122.1
DO46606
0 years, female, NA, stage:III, alive, 804 days
1117.9
DO46376
0 years, female, NA, stage:III, dead, 1430 days
1112.6
DO46325
0 years, female, NA, stage:III, dead, 477 days
1090.6
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
1070.2
DO46364
0 years, female, NA, stage:III, dead, 806 days
1038.6
DO46340
0 years, female, NA, stage:III, dead, 616 days
1019.3
DO46378
0 years, female, NA, stage:III, alive, 843 days
998.5
DO46576
0 years, female, NA, stage:III, alive, 133 days
968.4
DO46384
0 years, female, NA, stage:III, dead, 614 days
958.6
DO46533
0 years, female, NA, stage:III, alive, 3667 days
923.5
DO46332
0 years, female, NA, stage:III, dead, 689 days
920.4
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
915.4
DO46443
0 years, female, NA, stage:III, dead, 2464 days
913.9
DO46388
0 years, female, NA, stage:III, dead, 413 days
908.8
DO46463
0 years, female, NA, stage:III, dead, 2451 days
901.5
DO46560
0 years, female, NA, stage:IV, dead, 286 days
869.1
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
850.8
DO46354
0 years, female, NA, stage:III, dead, 843 days
840.7
DO46382
0 years, female, NA, stage:IV, dead, 311 days
820.5
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
791.4
DO46551
0 years, female, NA, stage:III, dead, 1055 days
772.1
DO46493
0 years, female, NA, stage:IV, alive, 839 days
687.4
DO46348
0 years, female, NA, stage:IV, dead, 287 days
655.7
DO46468
0 years, female, NA, stage:III, alive, 2776 days
655.0
DO46327
0 years, female, NA, stage:III, dead, 184 days
637.4
DO46328
0 years, female, NA, stage:III, dead, 972 days
629.9
DO46330
0 years, female, NA, stage:III, dead, 684 days
606.8
DO46402
0 years, female, NA, stage:III, dead, 511 days
584.7
DO46571
0 years, female, NA, stage:III, dead, 243 days
582.4
DO46392
0 years, female, NA, stage:III, dead, 628 days
567.3
DO46568
0 years, female, NA, stage:III, dead, 320 days
566.9
DO46528
0 years, female, NA, stage:III, alive, 6139 days
559.9
DO46380
0 years, female, NA, stage:III, dead, 1423 days
547.1
DO46508
0 years, female, NA, stage:III, dead, 2101 days
546.7
DO46408
0 years, female, NA, stage:III, dead, 489 days
503.4
DO46346
0 years, female, NA, stage:III, dead, 1187 days
497.5
DO46432
0 years, female, NA, stage:III, alive, 2218 days
470.6
DO46396
0 years, female, NA, stage:III, dead, 583 days
463.5
DO46398
0 years, female, NA, stage:III, alive, 437 days
461.5
DO46334
0 years, female, NA, stage:III, dead, 496 days
439.0
DO46358
0 years, female, NA, stage:III, dead, 423 days
434.5
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
430.9
DO46326
0 years, female, NA, stage:III, dead, 701 days
420.3
DO46400
0 years, female, NA, stage:III, dead, 719 days
416.7
DO46566
0 years, female, NA, stage:III, dead, 673 days
416.2
DO46404
0 years, female, NA, stage:III, dead, 690 days
389.6
DO46602
0 years, female, NA, stage:III, dead, 205 days
379.3
DO46518
0 years, female, NA, stage:III, alive, 2960 days
371.4
DO46588
0 years, female, NA, stage:III, dead, 438 days
327.3
DO46362
0 years, female, NA, stage:III, dead, 1639 days
292.1
DO46338
0 years, female, NA, stage:III, dead, 596 days
273.4
DO46561
0 years, female, NA, stage:III, dead, 195 days
232.0
DO46336
0 years, female, NA, stage:IV, dead, 664 days
206.6
DO46436
0 years, female, NA, stage:III, alive, 3193 days
130.1
DO46386
0 years, female, NA, stage:III, dead, 1162 days
112.4
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
1.7
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
1.0
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
1.0
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
1.0
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
1.0
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
0.9
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
0.9
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
0.9
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
0.9
1a10c200-3895-4648-b951-94f99f_D2
Tumor
0.8
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
0.8
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
0.8
340a3769-3031-41ae-bb08-a2f696_D2
Normal
0.7
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
0.7
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
0.7
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
0.7
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
0.6
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
0.6
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
0.5
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
0.5
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
0.5
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
0.5
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
0.5
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
0.4
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
0.4
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
0.4
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
0.3
1772e913-f62e-446a-8cf3-720348_D2
Tumor
0.3
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
0.3
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
0.3
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
0.3
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
0.3
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
0.3
285fed94-1495-448e-879b-b55de9_D2
Tumor
0.2
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
0.2
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
0.2
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
0.2
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
0.2
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
0.2
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
0.2
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
0.2
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
0.1
a3a26070-fb84-406a-8280-d555e6_D2
Normal
0.1
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
0.1
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
0.1
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
0.1
a65d8e76-640f-4341-a561-afbb57_D2
Normal
0.1
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
0.1
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
0.1
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
0.0
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
0.0
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
0.0
2f901c90-617e-46da-9fac-d68369_D2
Tumor
0.0
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
0.0
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
0.0
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
0.0
15524912-685a-47ce-a824-567848_D2
Tumor
-0.1
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
-0.1
161317f3-1a39-438e-af45-cd2502_D2
Tumor
-0.1
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
-0.1
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
-0.1
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
-0.1
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
-0.1
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
-0.1
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
-0.2
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
-0.2
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
-0.2
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
-0.2
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
-0.2
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
-0.2
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
-0.2
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
-0.2
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
-0.2
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
-0.2
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
-0.2
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
-0.2
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
-0.2
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
-0.3
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
-0.3
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
-0.3
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
-0.3
21efd60f-6a31-4b98-9477-16a905_D2
Normal
-0.3
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
-0.3
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
-0.3
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
-0.3
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
-0.3
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
-0.3
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
-0.3
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
-0.3
e9d416e7-f661-400a-896e-388545_D2
Tumor
-0.4
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
-0.4
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
-0.4
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
-0.4
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
-0.4
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
-0.4
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
-0.4
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
-0.5
10c2d629-0287-4511-ac25-f29031_D2
Tumor
-0.5
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
-0.5
1db5574d-aca7-403c-8100-6e705f_D2
Normal
-0.6
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
-0.6
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
-0.6
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
-0.6
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
-0.7
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
-0.7
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
-0.8
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
-0.9
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
-0.9
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.