MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.1 nTPM
HPA Brain:15.4 nTPM
GTEx:13.1 nTPM
FANTOM5:8.5 Scaled Tags Per Million
Pig:75.2 nTPM
Mouse:38.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.7
2411 Female, age 72, unknown 17.3
2019 Male, age 18, unknown 17.1
2219 Male, age 76, both hemispheres 16.2
1827 Male, age 72, unknown 14.2
2666 Male, age 74, left hemisphere 13.8
2828 Female, age 72, unknown 13.6
1833 Male, age 53, unknown 12.4
1830 Male, age 51, unknown 11.8
2586 Male, age 75, left hemisphere 10.8
1870 Female, age 42, unknown 9.5
Dorsal raphe nucleus
nTPM: 13.9
2298 Female, age 72, unknown 20.5
2750 Male, age 76, both hemispheres 12.8
1828 Male, age 53, unknown 12.5
2047 Male, age 72, unknown 12.2
2016 Female, age 72, unknown 11.7
Inferior colliculus
nTPM: 10.8
2097 Female, age 72, unknown 14.9
2849 Male, age 72, unknown 9.7
1890 Male, age 53, unknown 9.6
1848 Female, age 42, unknown 9.1
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 15.4
1795 Male, age 51, unknown 17.2
2502 Female, age 75, unknown 15.0
1947 Male, age 18, unknown 14.0
Periaquaductal grey, dorsal
nTPM: 12.0
2464 Female, age 72, unknown 14.4
1840 Male, age 53, unknown 11.5
2850 Male, age 76, both hemispheres 11.2
1831 Male, age 72, unknown 11.0
Periaquaductal grey, lateral
nTPM: 13.8
2272 Male, age 74, both hemispheres 17.5
2140 Male, age 76, both hemispheres 13.1
2053 Male, age 18, unknown 10.8
Pretectal area
nTPM: 15.4
1816 Male, age 51, unknown 19.4
1815 Male, age 53, unknown 19.0
2007 Male, age 72, unknown 17.2
1944 Female, age 72, unknown 17.0
2273 Male, age 74, both hemispheres 16.3
1817 Female, age 42, unknown 15.1
2667 Female, age 75, unknown 14.5
2316 Male, age 76, right hemisphere 13.7
2224 Female, age 72, unknown 12.6
2407 Male, age 75, both hemispheres 12.5
2825 Male, age 18, unknown 12.4
Red nucleus
nTPM: 13.8
2725 Female, age 75, unknown 17.3
2785 Male, age 18, unknown 15.3
2823 Male, age 76, right hemisphere 14.8
1904 Male, age 53, unknown 14.7
2584 Male, age 75, left hemisphere 14.7
2227 Male, age 72, unknown 14.2
1954 Female, age 42, unknown 13.5
2588 Male, age 74, left hemisphere 12.8
1865 Male, age 51, unknown 12.7
2769 Male, age 72, unknown 11.9
2503 Female, age 72, unknown 11.7
1821 Female, age 72, unknown 11.6
Substantia nigra
nTPM: 13.9
2409 Female, age 72, unknown 19.2
2241 Male, age 72, unknown 16.1
1916 Female, age 42, unknown 13.9
1941 Male, age 53, unknown 13.9
1889 Female, age 72, unknown 13.6
1851 Male, age 51, unknown 13.4
2590 Female, age 75, unknown 13.4
2699 Male, age 18, unknown 13.2
2665 Male, age 74, both hemispheres 12.9
2583 Male, age 75, right hemisphere 9.7
Superior colliculus
nTPM: 13.2
2087 Female, age 72, unknown 19.9
2261 Male, age 18, unknown 16.0
2587 Male, age 74, left hemisphere 15.8
1995 Male, age 72, unknown 13.6
1796 Male, age 53, unknown 13.1
1839 Male, age 51, unknown 11.3
2668 Female, age 75, unknown 11.3
1895 Male, age 76, right hemisphere 11.2
1913 Female, age 42, unknown 10.5
2664 Male, age 75, both hemispheres 9.6
Ventral tegmental area
nTPM: 13.9
2410 Female, age 72, unknown 16.3
2218 Male, age 76, both hemispheres 14.1
1915 Female, age 42, unknown 13.9
1942 Male, age 51, unknown 13.9
2021 Male, age 53, unknown 13.7
2223 Female, age 72, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.1
Samples: 139

Max nTPM: 23.4
Min nTPM: 4.9
Std nTPM: 4.1
Median nTPM: 13.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 23.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 22.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 22.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 21.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 21.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 20.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 19.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 19.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 19.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.7
Samples: 4

Max nTPM: 76.1
Min nTPM: 29.6
Sample A Female 76.1
Sample B Female 42.5
Sample C Male 62.5
Sample D Male 29.6
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 95.9
Min nTPM: 47.0
Sample A Female 49.1
Sample B Female 47.0
Sample C Male 95.9
Sample D Male 58.2
Periaqueductal gray
nTPM: 38.2
Samples: 3

Max nTPM: 46.6
Min nTPM: 32.1
Sample B Female 35.8
Sample C Male 46.6
Sample D Male 32.1
Superior colliculi
nTPM: 75.2
Samples: 4

Max nTPM: 97.2
Min nTPM: 55.1
Sample A Female 76.8
Sample B Female 71.8
Sample C Male 97.2
Sample D Male 55.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 41.5
Min nTPM: 32.7
Sample A Male 41.0
Sample B Male 40.1
Sample C Female 32.7
Sample D Female 41.5

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