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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
84.1
nTPM
HPA Brain:
41.4
nTPM
GTEx:
84.1
nTPM
FANTOM5:
99.1
Scaled Tags Per Million
Pig:
22.6
nTPM
Mouse:
30.7
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 28.8
1870
Female, age 42, unknown
41.4
2219
Male, age 76, both hemispheres
34.1
1827
Male, age 72, unknown
32.8
1830
Male, age 51, unknown
30.4
1833
Male, age 53, unknown
29.1
2019
Male, age 18, unknown
28.5
2411
Female, age 72, unknown
25.6
2666
Male, age 74, left hemisphere
25.4
2828
Female, age 72, unknown
21.4
2586
Male, age 75, left hemisphere
19.1
Dorsal raphe nucleus nTPM: 31.9
2016
Female, age 72, unknown
33.7
2047
Male, age 72, unknown
33.0
1828
Male, age 53, unknown
32.6
2750
Male, age 76, both hemispheres
32.5
2298
Female, age 72, unknown
27.9
Inferior colliculus nTPM: 35.0
2097
Female, age 72, unknown
38.0
2849
Male, age 72, unknown
35.7
1890
Male, age 53, unknown
35.0
1848
Female, age 42, unknown
31.1
Median raphe nucleus nTPM: 41.4
2220
Male, age 76, midline
41.4
Periaquaductal grey, anterior nTPM: 32.6
1947
Male, age 18, unknown
36.4
1795
Male, age 51, unknown
31.3
2502
Female, age 75, unknown
30.1
Periaquaductal grey, dorsal nTPM: 30.7
2850
Male, age 76, both hemispheres
36.5
1840
Male, age 53, unknown
32.5
1831
Male, age 72, unknown
28.4
2464
Female, age 72, unknown
25.4
Periaquaductal grey, lateral nTPM: 28.9
2272
Male, age 74, both hemispheres
31.5
2053
Male, age 18, unknown
29.5
2140
Male, age 76, both hemispheres
25.7
Pretectal area nTPM: 34.5
1816
Male, age 51, unknown
41.4
2224
Female, age 72, unknown
40.5
2007
Male, age 72, unknown
37.9
1817
Female, age 42, unknown
35.4
2667
Female, age 75, unknown
34.7
1944
Female, age 72, unknown
33.9
2825
Male, age 18, unknown
33.3
2407
Male, age 75, both hemispheres
32.3
1815
Male, age 53, unknown
30.8
2316
Male, age 76, right hemisphere
30.1
2273
Male, age 74, both hemispheres
29.0
Red nucleus nTPM: 28.9
2725
Female, age 75, unknown
34.8
1821
Female, age 72, unknown
33.8
1865
Male, age 51, unknown
32.8
2584
Male, age 75, left hemisphere
31.8
1904
Male, age 53, unknown
30.7
1954
Female, age 42, unknown
30.1
2785
Male, age 18, unknown
27.7
2503
Female, age 72, unknown
27.3
2823
Male, age 76, right hemisphere
26.7
2588
Male, age 74, left hemisphere
24.4
2769
Male, age 72, unknown
24.2
2227
Male, age 72, unknown
22.1
Substantia nigra nTPM: 34.6
2241
Male, age 72, unknown
46.9
2409
Female, age 72, unknown
45.3
1941
Male, age 53, unknown
38.2
1889
Female, age 72, unknown
37.8
1916
Female, age 42, unknown
35.2
2699
Male, age 18, unknown
31.7
1851
Male, age 51, unknown
30.1
2583
Male, age 75, right hemisphere
28.5
2665
Male, age 74, both hemispheres
27.2
2590
Female, age 75, unknown
25.0
Superior colliculus nTPM: 30.4
2587
Male, age 74, left hemisphere
36.3
2668
Female, age 75, unknown
35.7
1895
Male, age 76, right hemisphere
34.1
1913
Female, age 42, unknown
30.8
2087
Female, age 72, unknown
30.3
1839
Male, age 51, unknown
30.1
2261
Male, age 18, unknown
29.4
1796
Male, age 53, unknown
28.6
1995
Male, age 72, unknown
25.9
2664
Male, age 75, both hemispheres
22.3
Ventral tegmental area nTPM: 32.5
2218
Male, age 76, both hemispheres
38.1
1915
Female, age 42, unknown
37.1
2223
Female, age 72, unknown
36.4
2410
Female, age 72, unknown
30.7
2021
Male, age 53, unknown
27.4
1942
Male, age 51, unknown
25.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 84.1
Samples: 139
Max nTPM: 153.0
Min nTPM: 57.0
Std nTPM: 15.5
Median nTPM: 82.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
153.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
135.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
129.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
125.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
120.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
114.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
111.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
110.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
109.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
107.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
106.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
106.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
103.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
101.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
101.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
101.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
100.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
99.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
99.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
98.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
98.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
98.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
98.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
96.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
96.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
96.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
95.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
95.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
95.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
94.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
94.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
94.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
93.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
93.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
93.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
92.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
91.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
91.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
91.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
90.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
89.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
89.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
89.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
89.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
89.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
88.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
88.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
87.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
87.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
87.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
87.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
86.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
86.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
86.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
85.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
85.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
85.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
84.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
84.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
84.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
84.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
84.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
84.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
84.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
83.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
83.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
82.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
82.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
82.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
82.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
81.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
81.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
80.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
80.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
80.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
80.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
79.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
79.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
79.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
79.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
79.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
79.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
79.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
79.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
78.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
77.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
77.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
76.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
76.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
76.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
75.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
75.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
75.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
75.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
74.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
74.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
74.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
74.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
74.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
73.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
73.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
72.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
72.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
72.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
72.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
72.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
71.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
71.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
71.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
71.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
71.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
70.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
70.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
70.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
70.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
70.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
69.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
69.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
68.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
68.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
68.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
67.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
67.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
67.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
67.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
67.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
67.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
67.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
67.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
66.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
65.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
64.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
63.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
63.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
63.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
62.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
62.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
61.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
57.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30.7
Samples: 4
Max nTPM: 32.3
Min nTPM: 28.3
Sample A
Male
32.3
Sample B
Male
30.3
Sample C
Female
32.0
Sample D
Female
28.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.