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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
74.2
nTPM
HPA Brain:
34.7
nTPM
GTEx:
74.2
nTPM
FANTOM5:
113.0
Scaled Tags Per Million
Pig:
20.8
nTPM
Mouse:
24.9
nTPM
Allen mouse:
0.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA002866
Glial cells
Not detected
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 34.7
1898
Male, age 80, left hemisphere
39.6
1855
Male, age 76, left hemisphere
36.6
1911
Female, age 85, right hemisphere
34.6
2529
Female, age 94, left hemisphere
34.6
2148
Female, age 91, left hemisphere
33.3
2621
Female, age 67, right hemisphere
29.1
Dentate gyrus nTPM: 31.2
2010
Male, age 76, both hemispheres
41.1
1927
Female, age 91, both hemispheres
33.8
2530
Female, age 94, left hemisphere
31.4
2246
Female, age 85, both hemispheres
29.2
2531
Female, age 67, both hemispheres
28.3
2528
Male, age 74, both hemispheres
23.1
Entorhinal gyrus nTPM: 30.0
1938
Female, age 85, left hemisphere
33.6
1787
Male, age 76, left hemisphere
33.3
2686
Male, age 75, right hemisphere
31.8
2117
Female, age 91, right hemisphere
31.7
2764
Male, age 80, right hemisphere
25.5
2613
Female, age 94, left hemisphere
24.2
Hippocampus, CA1 nTPM: 29.7
1873
Female, age 85, both hemispheres
33.6
2045
Male, age 76, both hemispheres
31.4
2749
Male, age 80, left hemisphere
31.0
2527
Male, age 74, both hemispheres
29.1
2082
Female, age 91, right hemisphere
23.5
Hippocampus, CA2 nTPM: 32.3
1892
Male, age 76, both hemispheres
54.6
1940
Female, age 85, left hemisphere
31.5
2437
Female, age 94, left hemisphere
29.6
1963
Male, age 80, left hemisphere
27.3
2249
Male, age 74, both hemispheres
27.3
2113
Female, age 91, right hemisphere
23.5
Hippocampus, CA3 nTPM: 31.5
1867
Male, age 76, both hemispheres
43.8
1891
Female, age 85, both hemispheres
34.3
2137
Male, age 80, left hemisphere
33.0
2436
Male, age 74, both hemispheres
30.4
2861
Female, age 67, both hemispheres
25.6
2620
Female, age 94, left hemisphere
21.7
Parahippocampal cortex nTPM: 30.6
1850
Male, age 80, both hemispheres
39.3
2250
Female, age 67, right hemisphere
34.6
2532
Female, age 72, left hemisphere
33.4
2245
Female, age 91, both hemispheres
31.9
1933
Female, age 85, both hemispheres
31.5
2693
Female, age 94, both hemispheres
31.4
2692
Male, age 74, both hemispheres
28.1
1990
Female, age 91, right hemisphere
27.2
2622
Female, age 67, right hemisphere
25.1
2018
Male, age 76, both hemispheres
24.0
Perirhinal gyrus nTPM: 30.5
1841
Female, age 85, right hemisphere
35.3
1847
Female, age 91, left hemisphere
33.2
1794
Male, age 80, right hemisphere
32.4
2521
Female, age 94, right hemisphere
27.5
2848
Male, age 76, right hemisphere
24.1
Subiculum nTPM: 32.9
2438
Female, age 94, left hemisphere
36.1
1901
Male, age 80, both hemispheres
36.0
1977
Female, age 85, both hemispheres
35.9
2619
Male, age 74, both hemispheres
32.3
2042
Male, age 76, both hemispheres
30.9
2729
Female, age 91, right hemisphere
26.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 74.2
Samples: 197
Max nTPM: 178.7
Min nTPM: 44.6
Std nTPM: 16.2
Median nTPM: 71.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
178.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
126.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
121.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
113.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
112.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
111.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
104.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
103.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
102.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
102.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
101.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
99.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
97.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
96.2
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
96.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
95.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
94.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
94.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
93.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
93.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
93.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
93.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
92.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
92.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
92.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
91.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
91.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
91.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
91.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
90.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
90.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
89.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
88.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
88.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
88.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
87.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
87.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
86.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
86.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
86.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
86.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
85.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
85.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
84.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
84.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
83.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
82.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
82.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
82.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
81.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
81.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
80.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
80.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
80.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
80.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
80.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
79.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
79.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
78.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
77.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
77.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
77.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
77.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
77.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
77.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
77.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
76.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
76.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
76.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
76.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
76.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
75.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
75.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
75.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
75.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
75.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
75.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
74.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
74.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
74.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
74.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
74.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
74.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
74.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
74.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
74.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
73.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
73.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
73.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
73.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
73.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
73.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
72.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
72.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
72.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
72.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
72.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
72.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
71.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
71.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
71.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
71.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
71.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
70.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
70.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
70.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
70.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
70.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
70.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
69.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
69.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
69.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
68.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
68.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
68.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
68.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
68.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
68.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
68.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
67.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
67.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
67.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
67.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
67.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
67.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
67.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
67.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
67.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
66.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
66.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
66.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
66.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
66.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
66.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
65.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
65.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
65.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
65.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
65.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
65.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
64.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
64.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
64.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
64.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
64.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
64.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
63.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
63.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
63.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
63.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
63.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
63.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
62.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
62.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
62.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
62.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
61.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
61.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
61.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
61.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
61.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
60.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
60.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
60.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
60.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
59.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
59.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
59.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
58.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
58.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
58.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
58.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
57.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
57.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
57.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
57.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
57.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
56.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
56.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
56.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
55.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
55.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
55.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
54.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
54.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
54.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
54.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
54.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
54.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
53.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
52.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
52.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
50.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
50.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
50.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
47.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
44.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 22.1
Samples: 4
Max nTPM: 24.4
Min nTPM: 18.1
Sample A
Male
23.8
Sample B
Male
21.9
Sample C
Female
24.4
Sample D
Female
18.1
Hippocampal formation nTPM: 24.9
Samples: 4
Max nTPM: 29.7
Min nTPM: 22.4
Sample A
Male
29.7
Sample B
Male
24.9
Sample C
Female
22.4
Sample D
Female
22.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.