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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJB6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
108.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
89.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
86.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
82.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
78.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
77.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
77.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
73.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
73.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
72.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
70.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
69.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
67.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
65.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
64.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
64.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
62.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
58.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
58.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
57.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
56.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
55.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
52.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
51.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
50.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
49.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
47.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
47.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
46.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
43.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
43.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
43.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
39.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
39.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
37.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJB6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.6
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
142.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
117.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
112.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
84.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
79.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
79.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
70.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
66.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
64.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
64.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
59.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
58.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
58.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
56.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
51.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
50.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
47.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
46.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
171
Tumor
1.5
483
Tumor
1.3
425
Tumor
1.2
387
Tumor
1.0
883
Tumor
1.0
951
Tumor
1.0
497
Tumor
0.9
661
Tumor
0.8
537
Tumor
0.8
231
Tumor
0.7
535
Tumor
0.7
944
Normal
0.7
477
Tumor
0.7
714
Normal
0.7
913
Tumor
0.7
375
Tumor
0.7
573
Tumor
0.7
211
Tumor
0.6
743
Tumor
0.6
965
Tumor
0.6
635
Tumor
0.5
1021
Tumor
0.5
123
Tumor
0.5
493
Tumor
0.5
385
Tumor
0.5
533
Tumor
0.5
567
Tumor
0.5
147
Tumor
0.5
185
Tumor
0.5
943
Tumor
0.5
983
Tumor
0.5
925
Tumor
0.4
283
Tumor
0.4
498
Normal
0.4
724
Normal
0.4
368
Normal
0.4
213
Tumor
0.4
137
Tumor
0.4
473
Tumor
0.4
257
Tumor
0.4
492
Normal
0.4
851
Tumor
0.4
785
Tumor
0.3
517
Tumor
0.3
665
Tumor
0.3
572
Normal
0.3
412
Normal
0.3
445
Tumor
0.3
866
Normal
0.3
525
Tumor
0.3
755
Tumor
0.3
878
Normal
0.3
923
Tumor
0.3
443
Tumor
0.3
227
Tumor
0.3
367
Tumor
0.3
697
Tumor
0.3
1013
Tumor
0.3
391
Tumor
0.3
1031
Tumor
0.2
351
Tumor
0.2
937
Tumor
0.2
471
Tumor
0.2
975
Tumor
0.2
223
Tumor
0.2
963
Tumor
0.2
571
Tumor
0.2
671
Tumor
0.2
956
Normal
0.2
411
Tumor
0.2
922
Normal
0.2
536
Normal
0.2
534
Normal
0.2
468
Normal
0.2
695
Tumor
0.2
873
Tumor
0.2
313
Tumor
0.2
355
Tumor
0.2
1045
Tumor
0.2
135
Tumor
0.1
977
Tumor
0.1
917
Tumor
0.1
148
Normal
0.1
1014
Normal
0.1
494
Normal
0.1
361
Tumor
0.1
648
Normal
0.1
915
Tumor
0.1
131
Tumor
0.1
545
Tumor
0.1
224
Normal
0.1
311
Tumor
0.1
452
Normal
0.1
435
Tumor
0.1
745
Tumor
0.1
1027
Tumor
0.1
356
Normal
0.1
487
Tumor
0.1
284
Normal
0.1
877
Tumor
0.1
515
Tumor
0.1
816
Normal
0.1
727
Tumor
0.1
125
Tumor
0.1
217
Tumor
0.1
161
Tumor
0.1
557
Tumor
0.1
363
Tumor
0.1
968
Normal
0.1
647
Tumor
0.1
426
Normal
0.1
953
Tumor
0.1
538
Normal
0.1
641
Tumor
0.1
1041
Tumor
0.1
957
Tumor
0.1
353
Tumor
0.1
427
Tumor
0.1
554
Normal
0.0
187
Tumor
0.0
261
Tumor
0.0
978
Normal
0.0
327
Tumor
0.0
685
Tumor
0.0
421
Tumor
0.0
921
Tumor
0.0
463
Tumor
0.0
911
Tumor
0.0
867
Tumor
0.0
258
Normal
0.0
267
Tumor
0.0
713
Tumor
0.0
314
Normal
0.0
746
Normal
0.0
297
Tumor
0.0
285
Tumor
0.0
141
Tumor
0.0
744
Normal
0.0
455
Tumor
0.0
221
Tumor
0.0
737
Tumor
0.0
111
Normal
0.0
954
Normal
0.0
615
Tumor
0.0
328
Normal
0.0
478
Normal
0.0
563
Tumor
0.0
861
Tumor
0.0
516
Normal
0.0
864
Normal
0.0
127
Tumor
-0.1
464
Normal
-0.1
491
Tumor
-0.1
1025
Tumor
-0.1
527
Tumor
-0.1
446
Normal
-0.1
191
Tumor
-0.1
916
Normal
-0.1
966
Normal
-0.1
852
Normal
-0.1
857
Tumor
-0.1
823
Tumor
-0.1
721
Tumor
-0.1
461
Tumor
-0.1
738
Normal
-0.1
357
Tumor
-0.1
433
Tumor
-0.1
395
Tumor
-0.1
466
Normal
-0.1
513
Tumor
-0.1
553
Tumor
-0.1
451
Tumor
-0.1
958
Normal
-0.1
881
Tumor
-0.1
984
Normal
-0.1
232
Normal
-0.1
722
Normal
-0.1
484
Normal
-0.1
488
Normal
-0.1
415
Tumor
-0.1
815
Tumor
-0.1
271
Tumor
-0.1
472
Normal
-0.1
955
Tumor
-0.1
286
Normal
-0.1
938
Normal
-0.1
524
Normal
-0.1
1032
Normal
-0.1
1026
Normal
-0.1
362
Normal
-0.1
431
Tumor
-0.1
863
Tumor
-0.1
514
Normal
-0.2
331
Tumor
-0.2
448
Normal
-0.2
474
Normal
-0.2
882
Normal
-0.2
384
Normal
-0.2
447
Tumor
-0.2
627
Tumor
-0.2
416
Normal
-0.2
865
Tumor
-0.2
393
Tumor
-0.2
262
Normal
-0.2
1015
Tumor
-0.2
145
Tumor
-0.2
383
Tumor
-0.2
462
Normal
-0.2
662
Normal
-0.2
481
Tumor
-0.2
172
Normal
-0.2
518
Normal
-0.2
741
Tumor
-0.2
546
Normal
-0.2
716
Normal
-0.2
558
Normal
-0.2
924
Normal
-0.2
628
Normal
-0.2
618
Normal
-0.2
272
Normal
-0.2
465
Tumor
-0.2
423
Tumor
-0.2
574
Normal
-0.2
874
Normal
-0.2
964
Normal
-0.2
228
Normal
-0.2
396
Normal
-0.2
976
Normal
-0.2
113
Tumor
-0.2
467
Tumor
-0.2
786
Normal
-0.2
616
Normal
-0.2
444
Normal
-0.2
364
Normal
-0.2
696
Normal
-0.2
663
Tumor
-0.2
1044
Normal
-0.2
188
Normal
-0.2
824
Normal
-0.2
918
Normal
-0.2
982
Normal
-0.3
268
Normal
-0.3
813
Tumor
-0.3
686
Normal
-0.3
884
Normal
-0.3
672
Normal
-0.3
528
Normal
-0.3
388
Normal
-0.3
422
Normal
-0.3
386
Normal
-0.3
523
Tumor
-0.3
212
Normal
-0.3
162
Normal
-0.3
126
Normal
-0.3
365
Tumor
-0.3
424
Normal
-0.3
114
Normal
-0.3
715
Tumor
-0.3
1028
Normal
-0.3
756
Normal
-0.3
1016
Normal
-0.3
728
Normal
-0.3
392
Normal
-0.3
617
Tumor
-0.3
413
Tumor
-0.3
354
Normal
-0.3
642
Normal
-0.3
124
Normal
-0.3
376
Normal
-0.3
434
Normal
-0.3
858
Normal
-0.3
723
Tumor
-0.3
568
Normal
-0.3
112
Tumor
-0.3
818
Normal
-0.3
777
Tumor
-0.3
192
Normal
-0.3
742
Normal
-0.3
926
Normal
-0.3
394
Normal
-0.3
778
Normal
-0.3
436
Normal
-0.3
967
Tumor
-0.3
564
Normal
-0.3
195
Tumor
-0.3
186
Normal
-0.3
278
Normal
-0.3
817
Tumor
-0.3
1042
Normal
-0.3
456
Normal
-0.3
142
Normal
-0.4
1022
Normal
-0.4
868
Normal
-0.4
352
Normal
-0.4
912
Normal
-0.4
664
Normal
-0.4
341
Tumor
-0.4
526
Normal
-0.4
482
Normal
-0.4
952
Normal
-0.4
146
Normal
-0.4
214
Normal
-0.4
814
Normal
-0.4
343
Tumor
-0.4
128
Normal
-0.4
344
Normal
-0.4
432
Normal
-0.4
312
Normal
-0.4
666
Normal
-0.4
862
Normal
-0.4
1043
Tumor
-0.4
132
Normal
-0.4
366
Normal
-0.4
981
Tumor
-0.4
636
Normal
-0.4
698
Normal
-0.4
277
Tumor
-0.4
138
Normal
-0.4
332
Normal
-0.4
914
Normal
-0.5
342
Normal
-0.5
298
Normal
-0.5
218
Normal
-0.5
358
Normal
-0.5
136
Normal
-0.6
1046
Normal
-0.6
428
Normal
-0.6
196
Normal
-0.6
222
Normal
-0.7
414
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
