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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
High
Limiting membrane:
Not detected
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
213.7
nTPM
GTEx:
213.7
nTPM
FANTOM5:
1.4
Scaled Tags Per Million
Pig:
0.1
nTPM
Mouse:
0.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA041733
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Not detected
Inner plexiform layer
High
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
213.7
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 213.7
Samples: 105
Max nTPM: 1155.7
Min nTPM: 5.9
Std nTPM: 246.9
Median nTPM:
41_1
94 years, female
1155.7
384_1
83 years, male
1093.7
308_1
70 years, female
1088.6
307_1
66 years, female
1018.2
2_1
77 years, female
940.2
490_1
67 years, female
847.7
311_1
78 years, male
671.2
491_1
89 years, female
666.3
495_1
57 years, female
587.7
89_1
63 years, male
586.0
119_1
70 years, female
555.4
120_1
70 years, female
466.5
117_1
61 years, male
458.6
293_1
68 years, female
445.1
317_1
60 years, male
383.8
447_1
81 years, male
356.3
173_1
67 years, male
350.2
315_1
62 years, female
336.9
313_1
79 years, female
322.7
4_1
88 years, female
318.9
321_1
62 years, female
314.2
320_1
89 years, female
313.8
376_1
75 years, female
287.8
288_1
66 years, female
281.8
145_1
84 years, male
256.0
43_1
64 years, female
239.5
137_1
83 years, male
230.1
394_1
75 years, female
229.1
139_1
64 years, female
223.1
452_1
88 years, female
217.0
291_1
76 years, male
204.3
172_1
72 years, female
202.0
237_1
82 years, male
199.4
254_1
77 years, female
197.3
526_1
61 years, male
195.5
348_1
84 years, male
194.2
406_1
79 years, male
193.7
314_1
67 years, male
180.9
319_1
81 years, male
173.7
351_1
91 years, male
164.4
322_1
76 years, male
162.9
389_1
86 years, female
157.2
414_1
84 years, female
155.8
42_1
85 years, male
154.8
115_1
83 years, male
147.5
501_1
88 years, male
145.6
17_1
71 years, male
144.8
324_1
76 years, male
141.8
109_1
81 years, female
140.6
350_1
84 years, female
140.5
6_1
73 years, female
140.3
318_1
68 years, male
131.3
264_1
73 years, female
127.9
126_1
63 years, male
126.9
243_1
75 years, male
126.9
354_1
81 years, female
126.5
142_1
61 years, female
120.9
480_1
63 years, male
120.3
466_1
57 years, female
117.9
353_1
82 years, female
116.0
375_1
74 years, female
110.0
81_1
67 years, male
108.7
503_1
68 years, male
108.0
218_1
71 years, female
105.8
162_1
79 years, female
101.6
295_1
61 years, female
100.5
189_1
76 years, male
84.0
9_1
66 years, female
82.0
386_1
76 years, male
77.5
506_1
65 years, male
74.6
415_1
77 years, female
74.5
251_1
78 years, male
73.7
396_1
62 years, male
73.1
404_1
82 years, female
72.8
149_1
88 years, male
72.1
163_1
78 years, male
71.9
349_1
83 years, male
65.0
518_1
75 years, female
64.0
35_1
74 years, female
61.6
405_1
91 years, male
60.4
32_1
67 years, male
60.1
18_1
88 years, male
60.0
153_1
70 years, female
59.9
286_1
68 years, female
56.2
413_1
59 years, female
54.3
99_1
64 years, male
53.7
468_1
89 years, male
48.9
347_1
72 years, male
48.6
265_1
87 years, male
45.7
499_1
55 years, female
43.6
356_1
87 years, female
43.3
229_1
69 years, female
42.2
355_1
70 years, female
41.5
379_1
60 years, male
35.7
217_1
76 years, male
34.7
517_1
88 years, male
34.4
246_1
77 years, male
28.3
266_1
85 years, male
19.6
377_1
82 years, female
18.4
177_1
74 years, male
17.1
292_1
71 years, male
16.8
425_1
59 years, female
14.1
335_1
73 years, female
10.9
316_1
62 years, male
10.6
352_1
62 years, male
5.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
