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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.2
nTPM
Monaco:
228.6
nTPM
Schmiedel:
247.4
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.2
HPA sample
nTPM
gdT-cell nTPM: 18.0
Samples: 6
Max nTPM: 26.5
Min nTPM: 9.9
P10809_1007
20.1
P10809_1022
26.5
P10809_1041
9.9
P10809_1060
16.6
P10809_1077
12.4
P10809_1098
22.2
MAIT T-cell nTPM: 19.6
Samples: 6
Max nTPM: 31.8
Min nTPM: 12.6
P10809_1006
31.8
P10809_1024
28.1
P10809_1043
13.5
P10809_1062
17.3
P10809_1083
14.2
P10809_1097
12.6
Memory CD4 T-cell nTPM: 20.7
Samples: 6
Max nTPM: 34.2
Min nTPM: 14.9
P10809_1014
34.2
P10809_1026
17.8
P10809_1045
21.8
P10809_1064
15.0
P10809_1086
14.9
P10809_1113
20.6
Memory CD8 T-cell nTPM: 18.1
Samples: 5
Max nTPM: 32.4
Min nTPM: 10.7
P10809_1012
32.4
P10809_1027
12.6
P10809_1046
16.5
P10809_1065
10.7
P10809_1111
18.2
Naive CD4 T-cell nTPM: 8.6
Samples: 6
Max nTPM: 12.1
Min nTPM: 4.0
P10809_1015
12.1
P10809_1030
8.7
P10809_1049
4.0
P10809_1068
7.6
P10809_1085
10.5
P10809_1112
8.4
Naive CD8 T-cell nTPM: 10.9
Samples: 6
Max nTPM: 14.0
Min nTPM: 8.0
P10809_1016
14.0
P10809_1031
13.9
P10809_1050
9.8
P10809_1069
8.0
P10809_1087
10.4
P10809_1110
9.0
T-reg nTPM: 42.2
Samples: 6
Max nTPM: 84.8
Min nTPM: 15.0
P10809_1018
84.8
P10809_1037
46.0
P10809_1056
15.0
P10809_1075
41.1
P10809_1094
50.2
P10809_1106
16.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
228.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 158.1
Samples: 4
Max nTPM: 165.6
Min nTPM: 150.9
RHH5202_R3573
162.4
RHH5230_R3602
150.9
RHH5259_R3631
165.6
RHH5288_R3660
153.3
Effector memory CD8 T-cell nTPM: 163.8
Samples: 4
Max nTPM: 180.9
Min nTPM: 143.5
RHH5203_R3574
172.6
RHH5231_R3603
180.9
RHH5260_R3632
143.5
RHH5289_R3661
158.0
MAIT T-cell nTPM: 137.6
Samples: 4
Max nTPM: 188.3
Min nTPM: 90.7
RHH5233_R3605
146.4
RHH5205_R3576
188.3
RHH5262_R3634
90.7
RHH5297_R3663
124.8
Memory CD4 T-cell TFH nTPM: 209.7
Samples: 4
Max nTPM: 253.1
Min nTPM: 186.1
RHH5300_R3666
200.9
RHH5236_R3608
198.6
RHH5265_R3637
186.1
RHH5208_R3579
253.1
Memory CD4 T-cell Th1 nTPM: 159.2
Samples: 4
Max nTPM: 203.2
Min nTPM: 136.4
RHH5210_R3581
137.0
RHH5302_R3668
160.2
RHH5238_R3610
203.2
RHH5267_R3639
136.4
Memory CD4 T-cell Th1/Th17 nTPM: 180.7
Samples: 4
Max nTPM: 209.9
Min nTPM: 151.2
RHH5303_R3669
184.3
RHH5211_R3582
209.9
RHH5239_R3611
177.5
RHH5268_R3640
151.2
Memory CD4 T-cell Th17 nTPM: 228.6
Samples: 4
Max nTPM: 279.8
Min nTPM: 207.4
RHH5304_R3670
207.7
RHH5212_R3583
219.4
RHH5240_R3612
279.8
RHH5269_R3641
207.4
Memory CD4 T-cell Th2 nTPM: 166.1
Samples: 4
Max nTPM: 219.2
Min nTPM: 139.9
RHH5305_R3671
141.6
RHH5213_R3584
219.2
RHH5241_R3613
139.9
RHH5270_R3642
163.6
Naive CD4 T-cell nTPM: 54.0
Samples: 4
Max nTPM: 65.4
Min nTPM: 48.2
RHH5306_R3672
65.4
RHH5214_R3585
54.2
RHH5242_R3614
48.3
RHH5271_R3643
48.2
Naive CD8 T-cell nTPM: 64.6
Samples: 4
Max nTPM: 77.4
Min nTPM: 53.2
RHH5201_R3572
63.3
RHH5229_R3601
77.4
RHH5258_R3630
53.2
RHH5287_R3659
64.4
Non-Vd2 gdTCR nTPM: 135.8
Samples: 4
Max nTPM: 165.4
Min nTPM: 108.6
RHH5235_R3607
150.8
RHH5264_R3636
108.6
RHH5207_R3578
165.4
RHH5299_R3665
118.5
T-reg nTPM: 154.5
Samples: 4
Max nTPM: 181.1
Min nTPM: 111.1
RHH5301_R3667
155.3
RHH5237_R3609
181.1
RHH5266_R3638
111.1
RHH5209_R3580
170.6
Terminal effector memory CD4 T-cell nTPM: 171.2
Samples: 2
Max nTPM: 206.3
Min nTPM: 136.0
RHH5243_R3615
206.3
RHH5272_R3644
136.0
Terminal effector memory CD8 T-cell nTPM: 160.0
Samples: 4
Max nTPM: 186.3
Min nTPM: 121.6
RHH5232_R3604
180.9
RHH5204_R3575
121.6
RHH5261_R3633
151.0
RHH5296_R3662
186.3
Vd2 gdTCR nTPM: 123.7
Samples: 4
Max nTPM: 139.1
Min nTPM: 100.4
RHH5234_R3606
132.8
RHH5206_R3577
139.1
RHH5263_R3635
122.5
RHH5298_R3664
100.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
