MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:88.5 nTPM
GTEx:3.2 nTPM
FANTOM5:8.1 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:64.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 88.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.8
1870 Female, age 42, unknown 74.7
1833 Male, age 53, unknown 67.3
2411 Female, age 72, unknown 65.3
2219 Male, age 76, both hemispheres 62.4
2666 Male, age 74, left hemisphere 60.4
1827 Male, age 72, unknown 59.9
2828 Female, age 72, unknown 55.7
1830 Male, age 51, unknown 45.3
2586 Male, age 75, left hemisphere 45.3
2019 Male, age 18, unknown 32.2
Dorsal raphe nucleus
nTPM: 67.7
2298 Female, age 72, unknown 80.0
2016 Female, age 72, unknown 76.2
1828 Male, age 53, unknown 72.5
2047 Male, age 72, unknown 55.0
2750 Male, age 76, both hemispheres 54.7
Inferior colliculus
nTPM: 73.7
1848 Female, age 42, unknown 76.7
2849 Male, age 72, unknown 76.6
1890 Male, age 53, unknown 74.0
2097 Female, age 72, unknown 67.6
Median raphe nucleus
nTPM: 50.8
2220 Male, age 76, midline 50.8
Periaquaductal grey, anterior
nTPM: 82.1
1947 Male, age 18, unknown 100.9
2502 Female, age 75, unknown 78.6
1795 Male, age 51, unknown 66.7
Periaquaductal grey, dorsal
nTPM: 88.5
1840 Male, age 53, unknown 115.1
1831 Male, age 72, unknown 96.1
2850 Male, age 76, both hemispheres 79.4
2464 Female, age 72, unknown 63.3
Periaquaductal grey, lateral
nTPM: 66.3
2053 Male, age 18, unknown 80.2
2140 Male, age 76, both hemispheres 78.2
2272 Male, age 74, both hemispheres 40.6
Pretectal area
nTPM: 57.5
2224 Female, age 72, unknown 85.2
2667 Female, age 75, unknown 83.6
2825 Male, age 18, unknown 72.0
2316 Male, age 76, right hemisphere 68.2
2273 Male, age 74, both hemispheres 60.6
1944 Female, age 72, unknown 53.6
2407 Male, age 75, both hemispheres 52.1
1816 Male, age 51, unknown 45.1
1815 Male, age 53, unknown 42.1
1817 Female, age 42, unknown 37.3
2007 Male, age 72, unknown 32.4
Red nucleus
nTPM: 36.3
2584 Male, age 75, left hemisphere 45.6
1821 Female, age 72, unknown 44.2
2725 Female, age 75, unknown 43.7
2227 Male, age 72, unknown 41.7
2503 Female, age 72, unknown 39.6
2769 Male, age 72, unknown 39.6
2588 Male, age 74, left hemisphere 36.6
1865 Male, age 51, unknown 32.4
1954 Female, age 42, unknown 30.8
1904 Male, age 53, unknown 29.0
2785 Male, age 18, unknown 27.3
2823 Male, age 76, right hemisphere 24.4
Substantia nigra
nTPM: 73.6
2241 Male, age 72, unknown 111.5
1916 Female, age 42, unknown 91.5
1851 Male, age 51, unknown 89.1
2699 Male, age 18, unknown 87.8
2409 Female, age 72, unknown 86.6
2665 Male, age 74, both hemispheres 76.9
1889 Female, age 72, unknown 58.4
1941 Male, age 53, unknown 51.2
2590 Female, age 75, unknown 43.1
2583 Male, age 75, right hemisphere 40.2
Superior colliculus
nTPM: 59.7
1839 Male, age 51, unknown 83.3
2587 Male, age 74, left hemisphere 70.9
1895 Male, age 76, right hemisphere 70.3
1796 Male, age 53, unknown 69.8
2664 Male, age 75, both hemispheres 60.2
2668 Female, age 75, unknown 52.1
2261 Male, age 18, unknown 49.9
1913 Female, age 42, unknown 49.8
1995 Male, age 72, unknown 45.8
2087 Female, age 72, unknown 44.5
Ventral tegmental area
nTPM: 68.6
1915 Female, age 42, unknown 85.8
1942 Male, age 51, unknown 74.0
2021 Male, age 53, unknown 69.9
2218 Male, age 76, both hemispheres 61.4
2223 Female, age 72, unknown 61.4
2410 Female, age 72, unknown 59.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 18.5
Min nTPM: 0.7
Std nTPM: 1.7
Median nTPM: 3.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 18.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 7.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 5.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 5.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 5.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 5.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 4.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.1
FF:10158-103A5 76 years, female 8.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 26.6
Min nTPM: 13.4
Sample A Female 24.1
Sample B Female 26.6
Sample C Male 20.1
Sample D Male 13.4
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 21.2
Sample C Male 18.1
Sample D Male 22.6
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 22.7
Min nTPM: 19.1
Sample B Female 21.1
Sample C Male 22.7
Sample D Male 19.1
Superior colliculi
nTPM: 21.3
Samples: 4

Max nTPM: 24.7
Min nTPM: 19.3
Sample A Female 24.7
Sample B Female 19.3
Sample C Male 21.0
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.0
Samples: 4

Max nTPM: 67.9
Min nTPM: 62.6
Sample A Male 67.9
Sample B Male 64.0
Sample C Female 62.6
Sample D Female 65.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71789837 Antisense, RP_050921_03_G03, Mouse strain C57BL/6J (56 days, male) 0.0

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