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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMG9 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
67.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMG9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
0.9
341
Tumor
0.7
343
Tumor
0.7
395
Tumor
0.7
463
Tumor
0.6
943
Tumor
0.6
497
Tumor
0.6
671
Tumor
0.6
647
Tumor
0.5
447
Tumor
0.5
533
Tumor
0.5
385
Tumor
0.5
695
Tumor
0.5
383
Tumor
0.5
865
Tumor
0.4
357
Tumor
0.4
393
Tumor
0.4
537
Tumor
0.4
661
Tumor
0.4
375
Tumor
0.4
663
Tumor
0.4
387
Tumor
0.4
351
Tumor
0.4
391
Tumor
0.4
951
Tumor
0.4
616
Normal
0.4
446
Normal
0.4
331
Tumor
0.4
571
Tumor
0.4
444
Normal
0.4
187
Tumor
0.3
435
Tumor
0.3
445
Tumor
0.3
535
Tumor
0.3
525
Tumor
0.3
112
Tumor
0.3
1021
Tumor
0.3
743
Tumor
0.3
465
Tumor
0.3
814
Normal
0.3
672
Normal
0.3
311
Tumor
0.3
813
Tumor
0.3
737
Tumor
0.3
161
Tumor
0.3
545
Tumor
0.3
432
Normal
0.3
937
Tumor
0.3
574
Normal
0.3
917
Tumor
0.3
277
Tumor
0.3
724
Normal
0.3
355
Tumor
0.3
983
Tumor
0.3
877
Tumor
0.3
123
Tumor
0.2
636
Normal
0.2
573
Tumor
0.2
615
Tumor
0.2
558
Normal
0.2
361
Tumor
0.2
884
Normal
0.2
217
Tumor
0.2
171
Tumor
0.2
1045
Tumor
0.2
564
Normal
0.2
965
Tumor
0.2
434
Normal
0.2
367
Tumor
0.2
953
Tumor
0.2
312
Normal
0.2
861
Tumor
0.2
125
Tumor
0.2
913
Tumor
0.2
213
Tumor
0.2
1031
Tumor
0.2
563
Tumor
0.2
414
Normal
0.2
493
Tumor
0.2
1013
Tumor
0.2
628
Normal
0.2
148
Normal
0.2
745
Tumor
0.2
464
Normal
0.2
356
Normal
0.2
297
Tumor
0.2
113
Tumor
0.2
132
Normal
0.2
128
Normal
0.2
467
Tumor
0.2
815
Tumor
0.2
186
Normal
0.2
314
Normal
0.2
436
Normal
0.2
923
Tumor
0.2
228
Normal
0.2
443
Tumor
0.2
618
Normal
0.2
873
Tumor
0.2
218
Normal
0.2
423
Tumor
0.1
196
Normal
0.1
222
Normal
0.1
721
Tumor
0.1
111
Normal
0.1
425
Tumor
0.1
127
Tumor
0.1
145
Tumor
0.1
456
Normal
0.1
527
Tumor
0.1
114
Normal
0.1
568
Normal
0.1
426
Normal
0.1
715
Tumor
0.1
921
Tumor
0.1
957
Tumor
0.1
172
Normal
0.1
1041
Tumor
0.1
278
Normal
0.1
851
Tumor
0.1
162
Normal
0.1
221
Tumor
0.1
685
Tumor
0.1
195
Tumor
0.1
138
Normal
0.1
483
Tumor
0.1
883
Tumor
0.1
191
Tumor
0.1
455
Tumor
0.1
192
Normal
0.1
477
Tumor
0.1
468
Normal
0.1
126
Normal
0.1
185
Tumor
0.1
536
Normal
0.1
925
Tumor
0.1
967
Tumor
0.1
332
Normal
0.1
224
Normal
0.1
452
Normal
0.1
424
Normal
0.1
515
Tumor
0.1
1025
Tumor
0.1
665
Tumor
0.0
214
Normal
0.0
914
Normal
0.0
413
Tumor
0.0
572
Normal
0.0
313
Tumor
0.0
964
Normal
0.0
817
Tumor
0.0
451
Tumor
0.0
975
Tumor
0.0
627
Tumor
0.0
697
Tumor
0.0
517
Tumor
0.0
466
Normal
0.0
1015
Tumor
0.0
284
Normal
0.0
662
Normal
0.0
491
Tumor
0.0
642
Normal
0.0
353
Tumor
0.0
298
Normal
0.0
422
Normal
0.0
421
Tumor
0.0
433
Tumor
0.0
786
Normal
0.0
857
Tumor
0.0
664
Normal
0.0
431
Tumor
0.0
1027
Tumor
0.0
227
Tumor
0.0
364
Normal
0.0
285
Tumor
0.0
1032
Normal
0.0
416
Normal
0.0
981
Tumor
0.0
427
Tumor
0.0
188
Normal
0.0
823
Tumor
0.0
411
Tumor
0.0
874
Normal
0.0
818
Normal
0.0
867
Tumor
0.0
1022
Normal
0.0
557
Tumor
0.0
915
Tumor
0.0
1042
Normal
0.0
386
Normal
0.0
963
Tumor
-0.1
648
Normal
-0.1
528
Normal
-0.1
727
Tumor
-0.1
147
Tumor
-0.1
882
Normal
-0.1
976
Normal
-0.1
365
Tumor
-0.1
344
Normal
-0.1
482
Normal
-0.1
146
Normal
-0.1
713
Tumor
-0.1
696
Normal
-0.1
428
Normal
-0.1
211
Tumor
-0.1
487
Tumor
-0.1
716
Normal
-0.1
481
Tumor
-0.1
394
Normal
-0.1
136
Normal
-0.1
881
Tumor
-0.1
212
Normal
-0.1
912
Normal
-0.1
283
Tumor
-0.1
412
Normal
-0.1
513
Tumor
-0.1
124
Normal
-0.1
698
Normal
-0.1
472
Normal
-0.1
916
Normal
-0.1
1026
Normal
-0.1
824
Normal
-0.1
741
Tumor
-0.1
328
Normal
-0.1
534
Normal
-0.1
955
Tumor
-0.1
858
Normal
-0.1
728
Normal
-0.1
666
Normal
-0.1
286
Normal
-0.1
137
Tumor
-0.1
514
Normal
-0.1
354
Normal
-0.1
523
Tumor
-0.1
363
Tumor
-0.1
863
Tumor
-0.1
396
Normal
-0.1
388
Normal
-0.1
1028
Normal
-0.1
777
Tumor
-0.2
492
Normal
-0.2
478
Normal
-0.2
352
Normal
-0.2
524
Normal
-0.2
142
Normal
-0.2
498
Normal
-0.2
862
Normal
-0.2
878
Normal
-0.2
392
Normal
-0.2
1044
Normal
-0.2
617
Tumor
-0.2
918
Normal
-0.2
415
Tumor
-0.2
868
Normal
-0.2
686
Normal
-0.2
368
Normal
-0.2
1043
Tumor
-0.2
141
Tumor
-0.2
1016
Normal
-0.2
327
Tumor
-0.2
756
Normal
-0.2
538
Normal
-0.2
516
Normal
-0.2
944
Normal
-0.2
864
Normal
-0.2
461
Tumor
-0.2
866
Normal
-0.2
744
Normal
-0.2
977
Tumor
-0.2
135
Tumor
-0.2
553
Tumor
-0.2
924
Normal
-0.2
956
Normal
-0.2
1046
Normal
-0.2
938
Normal
-0.2
722
Normal
-0.2
852
Normal
-0.2
742
Normal
-0.2
358
Normal
-0.2
966
Normal
-0.3
366
Normal
-0.3
978
Normal
-0.3
926
Normal
-0.3
982
Normal
-0.3
494
Normal
-0.3
488
Normal
-0.3
518
Normal
-0.3
723
Tumor
-0.3
526
Normal
-0.3
484
Normal
-0.3
954
Normal
-0.3
474
Normal
-0.3
714
Normal
-0.3
952
Normal
-0.3
968
Normal
-0.3
984
Normal
-0.3
1014
Normal
-0.3
342
Normal
-0.3
958
Normal
-0.3
473
Tumor
-0.3
738
Normal
-0.3
471
Tumor
-0.3
554
Normal
-0.4
546
Normal
-0.4
362
Normal
-0.4
384
Normal
-0.4
131
Tumor
-0.4
376
Normal
-0.4
641
Tumor
-0.4
746
Normal
-0.4
911
Tumor
-0.4
922
Normal
-0.4
778
Normal
-0.4
755
Tumor
-0.5
816
Normal
-0.5
223
Tumor
-0.5
635
Tumor
-0.5
785
Tumor
-0.5
448
Normal
-0.6
462
Normal
-0.7
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
