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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSK3A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
119.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
49.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
41.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSK3A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
66.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
61.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
53.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
0.9
533
Tumor
0.9
285
Tumor
0.8
911
Tumor
0.7
1027
Tumor
0.7
567
Tumor
0.7
443
Tumor
0.7
375
Tumor
0.7
661
Tumor
0.6
425
Tumor
0.6
473
Tumor
0.6
671
Tumor
0.6
1041
Tumor
0.6
777
Tumor
0.5
283
Tumor
0.5
745
Tumor
0.5
231
Tumor
0.5
131
Tumor
0.5
865
Tumor
0.5
913
Tumor
0.5
881
Tumor
0.5
147
Tumor
0.5
877
Tumor
0.5
715
Tumor
0.5
385
Tumor
0.5
491
Tumor
0.5
1013
Tumor
0.4
817
Tumor
0.4
697
Tumor
0.4
523
Tumor
0.4
573
Tumor
0.4
427
Tumor
0.4
785
Tumor
0.4
497
Tumor
0.4
515
Tumor
0.4
211
Tumor
0.4
545
Tumor
0.4
663
Tumor
0.4
257
Tumor
0.3
977
Tumor
0.3
647
Tumor
0.3
1021
Tumor
0.3
123
Tumor
0.3
851
Tumor
0.3
213
Tumor
0.3
277
Tumor
0.3
527
Tumor
0.3
983
Tumor
0.3
365
Tumor
0.3
525
Tumor
0.3
483
Tumor
0.3
393
Tumor
0.3
823
Tumor
0.3
921
Tumor
0.3
975
Tumor
0.3
395
Tumor
0.3
737
Tumor
0.3
351
Tumor
0.3
917
Tumor
0.2
537
Tumor
0.2
271
Tumor
0.2
455
Tumor
0.2
297
Tumor
0.2
191
Tumor
0.2
517
Tumor
0.2
627
Tumor
0.2
1043
Tumor
0.2
493
Tumor
0.2
883
Tumor
0.2
943
Tumor
0.2
815
Tumor
0.2
471
Tumor
0.2
341
Tumor
0.2
447
Tumor
0.2
461
Tumor
0.2
481
Tumor
0.2
553
Tumor
0.2
125
Tumor
0.2
1015
Tumor
0.2
327
Tumor
0.2
557
Tumor
0.2
861
Tumor
0.2
641
Tumor
0.2
221
Tumor
0.2
857
Tumor
0.2
965
Tumor
0.2
185
Tumor
0.2
937
Tumor
0.2
363
Tumor
0.2
635
Tumor
0.2
724
Normal
0.2
967
Tumor
0.2
741
Tumor
0.1
685
Tumor
0.1
141
Tumor
0.1
1045
Tumor
0.1
343
Tumor
0.1
223
Tumor
0.1
873
Tumor
0.1
981
Tumor
0.1
813
Tumor
0.1
161
Tumor
0.1
863
Tumor
0.1
957
Tumor
0.1
355
Tumor
0.1
1025
Tumor
0.1
357
Tumor
0.1
127
Tumor
0.1
867
Tumor
0.1
492
Normal
0.1
353
Tumor
0.1
192
Normal
0.1
421
Tumor
0.1
665
Tumor
0.1
188
Normal
0.1
713
Tumor
0.1
187
Tumor
0.1
953
Tumor
0.1
217
Tumor
0.1
963
Tumor
0.1
433
Tumor
0.1
267
Tumor
0.1
261
Tumor
0.1
951
Tumor
0.0
451
Tumor
0.0
978
Normal
0.0
1016
Normal
0.0
413
Tumor
0.0
137
Tumor
0.0
554
Normal
0.0
367
Tumor
0.0
1031
Tumor
0.0
311
Tumor
0.0
195
Tumor
0.0
536
Normal
0.0
982
Normal
0.0
135
Tumor
0.0
196
Normal
0.0
477
Tumor
0.0
218
Normal
0.0
411
Tumor
0.0
474
Normal
0.0
617
Tumor
0.0
571
Tumor
0.0
698
Normal
0.0
328
Normal
0.0
112
Tumor
0.0
727
Tumor
0.0
914
Normal
0.0
435
Tumor
0.0
814
Normal
0.0
1044
Normal
0.0
467
Tumor
0.0
874
Normal
0.0
923
Tumor
0.0
364
Normal
0.0
723
Tumor
0.0
915
Tumor
0.0
538
Normal
-0.1
868
Normal
-0.1
415
Tumor
-0.1
952
Normal
-0.1
721
Tumor
-0.1
513
Tumor
-0.1
145
Tumor
-0.1
984
Normal
-0.1
313
Tumor
-0.1
563
Tumor
-0.1
878
Normal
-0.1
955
Tumor
-0.1
535
Tumor
-0.1
728
Normal
-0.1
268
Normal
-0.1
1014
Normal
-0.1
383
Tumor
-0.1
126
Normal
-0.1
1028
Normal
-0.1
738
Normal
-0.1
746
Normal
-0.1
162
Normal
-0.1
516
Normal
-0.1
742
Normal
-0.1
778
Normal
-0.1
412
Normal
-0.1
384
Normal
-0.1
423
Tumor
-0.1
498
Normal
-0.1
755
Tumor
-0.1
361
Tumor
-0.1
546
Normal
-0.1
148
Normal
-0.1
262
Normal
-0.1
472
Normal
-0.1
113
Tumor
-0.1
434
Normal
-0.1
918
Normal
-0.1
171
Tumor
-0.1
258
Normal
-0.1
618
Normal
-0.1
448
Normal
-0.1
362
Normal
-0.1
331
Tumor
-0.1
214
Normal
-0.1
518
Normal
-0.1
487
Tumor
-0.1
564
Normal
-0.1
924
Normal
-0.1
386
Normal
-0.1
574
Normal
-0.1
786
Normal
-0.1
358
Normal
-0.1
616
Normal
-0.1
628
Normal
-0.2
392
Normal
-0.2
312
Normal
-0.2
344
Normal
-0.2
431
Tumor
-0.2
866
Normal
-0.2
916
Normal
-0.2
672
Normal
-0.2
111
Normal
-0.2
524
Normal
-0.2
314
Normal
-0.2
124
Normal
-0.2
278
Normal
-0.2
352
Normal
-0.2
968
Normal
-0.2
966
Normal
-0.2
342
Normal
-0.2
816
Normal
-0.2
212
Normal
-0.2
1026
Normal
-0.2
756
Normal
-0.2
862
Normal
-0.2
222
Normal
-0.2
416
Normal
-0.2
172
Normal
-0.2
744
Normal
-0.2
956
Normal
-0.2
445
Tumor
-0.2
272
Normal
-0.2
743
Tumor
-0.2
136
Normal
-0.2
1046
Normal
-0.2
478
Normal
-0.2
356
Normal
-0.2
284
Normal
-0.2
568
Normal
-0.2
426
Normal
-0.2
615
Tumor
-0.2
142
Normal
-0.2
482
Normal
-0.2
864
Normal
-0.2
636
Normal
-0.2
224
Normal
-0.2
494
Normal
-0.2
534
Normal
-0.2
466
Normal
-0.2
465
Tumor
-0.2
664
Normal
-0.2
484
Normal
-0.2
286
Normal
-0.2
444
Normal
-0.2
462
Normal
-0.2
852
Normal
-0.2
662
Normal
-0.2
391
Tumor
-0.2
558
Normal
-0.2
186
Normal
-0.2
298
Normal
-0.2
925
Tumor
-0.2
394
Normal
-0.2
464
Normal
-0.2
488
Normal
-0.2
686
Normal
-0.2
387
Tumor
-0.2
146
Normal
-0.2
456
Normal
-0.2
128
Normal
-0.2
422
Normal
-0.2
882
Normal
-0.2
396
Normal
-0.2
114
Normal
-0.2
648
Normal
-0.2
714
Normal
-0.3
528
Normal
-0.3
376
Normal
-0.3
227
Tumor
-0.3
824
Normal
-0.3
354
Normal
-0.3
366
Normal
-0.3
232
Normal
-0.3
132
Normal
-0.3
716
Normal
-0.3
436
Normal
-0.3
228
Normal
-0.3
138
Normal
-0.3
368
Normal
-0.3
424
Normal
-0.3
526
Normal
-0.3
468
Normal
-0.3
696
Normal
-0.3
414
Normal
-0.3
514
Normal
-0.3
1042
Normal
-0.3
954
Normal
-0.3
964
Normal
-0.3
695
Tumor
-0.3
976
Normal
-0.3
1022
Normal
-0.3
642
Normal
-0.3
452
Normal
-0.3
332
Normal
-0.3
572
Normal
-0.3
858
Normal
-0.3
722
Normal
-0.3
938
Normal
-0.3
922
Normal
-0.3
666
Normal
-0.3
818
Normal
-0.3
432
Normal
-0.3
388
Normal
-0.4
926
Normal
-0.4
944
Normal
-0.4
958
Normal
-0.4
912
Normal
-0.4
446
Normal
-0.4
428
Normal
-0.4
1032
Normal
-0.4
884
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
