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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
137.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
107.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
98.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
91.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
82.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
77.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
64.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
62.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
62.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
59.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
59.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
57.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
55.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
52.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
51.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
51.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
49.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
46.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
43.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
42.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
42.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
39.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
37.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ERF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.8
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
97.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
76.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
72.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
62.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
60.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
48.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
47.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
35.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
1.8
671
Tumor
1.6
975
Tumor
1.5
661
Tumor
1.4
715
Tumor
1.4
665
Tumor
1.1
463
Tumor
1.0
297
Tumor
0.9
1031
Tumor
0.9
342
Normal
0.9
481
Tumor
0.9
1043
Tumor
0.9
965
Tumor
0.9
921
Tumor
0.8
515
Tumor
0.8
877
Tumor
0.8
727
Tumor
0.8
112
Tumor
0.8
132
Normal
0.7
171
Tumor
0.7
967
Tumor
0.7
545
Tumor
0.7
881
Tumor
0.7
138
Normal
0.7
857
Tumor
0.6
425
Tumor
0.6
136
Normal
0.6
1025
Tumor
0.6
285
Tumor
0.6
385
Tumor
0.5
435
Tumor
0.5
647
Tumor
0.5
777
Tumor
0.5
785
Tumor
0.5
277
Tumor
0.5
283
Tumor
0.5
963
Tumor
0.5
983
Tumor
0.5
413
Tumor
0.5
353
Tumor
0.5
223
Tumor
0.5
213
Tumor
0.5
538
Normal
0.4
141
Tumor
0.4
523
Tumor
0.4
756
Normal
0.4
137
Tumor
0.4
977
Tumor
0.4
713
Tumor
0.4
714
Normal
0.4
354
Normal
0.4
482
Normal
0.4
393
Tumor
0.4
191
Tumor
0.4
428
Normal
0.3
1015
Tumor
0.3
743
Tumor
0.3
737
Tumor
0.3
443
Tumor
0.3
221
Tumor
0.3
911
Tumor
0.3
145
Tumor
0.3
858
Normal
0.3
786
Normal
0.3
745
Tumor
0.3
123
Tumor
0.3
915
Tumor
0.3
695
Tumor
0.3
1045
Tumor
0.3
716
Normal
0.3
473
Tumor
0.2
344
Normal
0.2
421
Tumor
0.2
1041
Tumor
0.2
981
Tumor
0.2
351
Tumor
0.2
231
Tumor
0.2
185
Tumor
0.2
431
Tumor
0.2
461
Tumor
0.2
411
Tumor
0.2
1013
Tumor
0.2
447
Tumor
0.2
445
Tumor
0.2
161
Tumor
0.2
261
Tumor
0.2
824
Normal
0.2
388
Normal
0.2
957
Tumor
0.2
394
Normal
0.2
211
Tumor
0.2
553
Tumor
0.2
518
Normal
0.2
341
Tumor
0.2
851
Tumor
0.2
742
Normal
0.2
467
Tumor
0.2
696
Normal
0.2
396
Normal
0.2
746
Normal
0.2
217
Tumor
0.2
192
Normal
0.2
1021
Tumor
0.2
426
Normal
0.2
142
Normal
0.2
195
Tumor
0.2
563
Tumor
0.2
386
Normal
0.2
391
Tumor
0.1
433
Tumor
0.1
535
Tumor
0.1
818
Normal
0.1
146
Normal
0.1
278
Normal
0.1
131
Tumor
0.1
358
Normal
0.1
465
Tumor
0.1
212
Normal
0.1
516
Normal
0.1
464
Normal
0.1
635
Tumor
0.1
444
Normal
0.1
331
Tumor
0.1
376
Normal
0.1
147
Tumor
0.1
557
Tumor
0.1
744
Normal
0.1
958
Normal
0.1
914
Normal
0.1
863
Tumor
0.1
817
Tumor
0.1
564
Normal
0.1
328
Normal
0.1
721
Tumor
0.1
363
Tumor
0.1
364
Normal
0.1
218
Normal
0.1
568
Normal
0.1
813
Tumor
0.1
352
Normal
0.1
558
Normal
0.1
366
Normal
0.1
311
Tumor
0.0
816
Normal
0.0
477
Tumor
0.0
526
Normal
0.0
355
Tumor
0.0
984
Normal
0.0
452
Normal
0.0
135
Tumor
0.0
446
Normal
0.0
723
Tumor
0.0
664
Normal
0.0
415
Tumor
0.0
187
Tumor
0.0
741
Tumor
0.0
912
Normal
0.0
534
Normal
0.0
514
Normal
0.0
224
Normal
0.0
1028
Normal
0.0
232
Normal
0.0
968
Normal
0.0
728
Normal
0.0
267
Tumor
0.0
186
Normal
0.0
456
Normal
0.0
196
Normal
0.0
738
Normal
0.0
913
Tumor
0.0
172
Normal
0.0
536
Normal
0.0
572
Normal
0.0
882
Normal
0.0
228
Normal
0.0
1026
Normal
0.0
513
Tumor
0.0
395
Tumor
-0.1
362
Normal
-0.1
524
Normal
-0.1
662
Normal
-0.1
666
Normal
-0.1
414
Normal
-0.1
416
Normal
-0.1
286
Normal
-0.1
778
Normal
-0.1
574
Normal
-0.1
432
Normal
-0.1
148
Normal
-0.1
982
Normal
-0.1
567
Tumor
-0.1
162
Normal
-0.1
852
Normal
-0.1
298
Normal
-0.1
873
Tumor
-0.1
222
Normal
-0.1
227
Tumor
-0.1
392
Normal
-0.1
356
Normal
-0.1
617
Tumor
-0.1
375
Tumor
-0.1
672
Normal
-0.1
722
Normal
-0.1
387
Tumor
-0.1
878
Normal
-0.1
474
Normal
-0.1
686
Normal
-0.1
1046
Normal
-0.1
434
Normal
-0.1
258
Normal
-0.1
327
Tumor
-0.1
384
Normal
-0.1
884
Normal
-0.1
451
Tumor
-0.1
423
Tumor
-0.1
127
Tumor
-0.1
312
Normal
-0.1
468
Normal
-0.1
455
Tumor
-0.2
698
Normal
-0.2
663
Tumor
-0.2
284
Normal
-0.2
1044
Normal
-0.2
918
Normal
-0.2
1016
Normal
-0.2
272
Normal
-0.2
755
Tumor
-0.2
422
Normal
-0.2
412
Normal
-0.2
926
Normal
-0.2
111
Normal
-0.2
114
Normal
-0.2
436
Normal
-0.2
268
Normal
-0.2
648
Normal
-0.2
976
Normal
-0.2
964
Normal
-0.2
361
Tumor
-0.2
313
Tumor
-0.2
525
Tumor
-0.2
472
Normal
-0.2
573
Tumor
-0.2
527
Tumor
-0.2
214
Normal
-0.2
124
Normal
-0.2
697
Tumor
-0.2
448
Normal
-0.2
462
Normal
-0.2
1014
Normal
-0.2
262
Normal
-0.2
528
Normal
-0.2
883
Tumor
-0.2
554
Normal
-0.2
257
Tumor
-0.2
571
Tumor
-0.2
546
Normal
-0.2
917
Tumor
-0.2
126
Normal
-0.2
1027
Tumor
-0.2
966
Normal
-0.3
923
Tumor
-0.3
466
Normal
-0.3
537
Tumor
-0.3
383
Tumor
-0.3
367
Tumor
-0.3
368
Normal
-0.3
724
Normal
-0.3
814
Normal
-0.3
188
Normal
-0.3
823
Tumor
-0.3
862
Normal
-0.3
685
Tumor
-0.3
271
Tumor
-0.3
365
Tumor
-0.3
427
Tumor
-0.3
916
Normal
-0.3
1042
Normal
-0.3
332
Normal
-0.3
478
Normal
-0.3
314
Normal
-0.3
533
Tumor
-0.4
357
Tumor
-0.4
922
Normal
-0.4
866
Normal
-0.4
864
Normal
-0.4
815
Tumor
-0.4
113
Tumor
-0.4
128
Normal
-0.4
924
Normal
-0.4
497
Tumor
-0.4
868
Normal
-0.4
874
Normal
-0.4
867
Tumor
-0.5
1032
Normal
-0.5
483
Tumor
-0.5
978
Normal
-0.5
471
Tumor
-0.6
1022
Normal
-0.6
641
Tumor
-0.6
925
Tumor
-0.7
493
Tumor
-0.7
125
Tumor
-0.7
618
Normal
-0.8
861
Tumor
-0.8
865
Tumor
-0.8
627
Tumor
-0.8
642
Normal
-0.9
484
Normal
-0.9
615
Tumor
-0.9
492
Normal
-1.0
636
Normal
-1.0
343
Tumor
-1.2
488
Normal
-1.2
491
Tumor
-1.2
494
Normal
-1.2
628
Normal
-1.3
498
Normal
-1.4
487
Tumor
-1.5
616
Normal
-1.6
424
Normal
-3.3
937
Tumor
N/A
938
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
