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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HPN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
269.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
740.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
722.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
668.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
619.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
618.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
568.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
562.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
560.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
549.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
548.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
539.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
531.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
529.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
525.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
524.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
520.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
520.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
512.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
506.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
505.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
500.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
498.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
497.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
495.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
492.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
484.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
473.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
472.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
466.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
464.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
461.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
460.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
446.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
443.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
439.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
432.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
425.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
422.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
421.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
417.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
414.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
413.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
411.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
410.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
409.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
408.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
407.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
404.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
403.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
398.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
397.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
394.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
394.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
390.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
390.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
390.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
387.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
387.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
382.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
381.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
378.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
377.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
375.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
373.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
372.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
372.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
369.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
368.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
367.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
365.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
365.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
364.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
363.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
363.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
363.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
361.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
360.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
359.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
358.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
356.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
352.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
351.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
350.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
350.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
346.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
345.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
343.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
341.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
339.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
337.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
337.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
335.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
334.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
328.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
327.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
325.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
324.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
323.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
323.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
323.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
323.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
323.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
321.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
321.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
321.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
320.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
319.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
319.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
318.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
317.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
317.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
316.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
316.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
315.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
313.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
312.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
310.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
310.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
307.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
306.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
306.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
306.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
305.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
305.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
304.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
303.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
302.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
301.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
300.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
300.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
299.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
297.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
293.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
291.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
291.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
289.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
289.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
289.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
288.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
288.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
288.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
287.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
287.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
286.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
284.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
284.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
283.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
283.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
282.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
282.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
282.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
280.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
280.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
279.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
278.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
278.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
277.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
277.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
274.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
274.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
273.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
273.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
273.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
272.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
272.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
272.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
271.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
271.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
269.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
265.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
265.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
264.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
264.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
263.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
262.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
261.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
261.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
259.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
256.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
255.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
255.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
255.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
254.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
254.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
254.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
253.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
253.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
252.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
252.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
251.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
251.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
250.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
250.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
250.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
250.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
250.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
249.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
248.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
248.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
246.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
245.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
245.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
244.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
243.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
243.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
243.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
242.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
241.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
240.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
239.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
238.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
238.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
237.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
235.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
233.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
233.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
232.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
232.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
232.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
231.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
231.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
231.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
230.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
228.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
227.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
226.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
226.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
225.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
225.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
225.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
224.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
223.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
223.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
222.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
221.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
221.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
220.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
218.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
217.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
217.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
216.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
216.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
215.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
215.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
213.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
212.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
212.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
212.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
211.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
211.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
210.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
209.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
209.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
208.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
208.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
207.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
206.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
205.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
201.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
200.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
199.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
197.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
197.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
195.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
194.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
194.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
190.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
189.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
188.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
187.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
186.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
184.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
184.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
184.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
183.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
181.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
181.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
179.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
179.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
177.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
175.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
172.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
171.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
171.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
166.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
166.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
165.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
165.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
165.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
164.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
163.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
161.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
161.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
161.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
158.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
158.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
157.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
157.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
156.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
151.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
147.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
147.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
146.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
146.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
145.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
144.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
144.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
143.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
142.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
142.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
141.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
140.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
139.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
139.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
138.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
135.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
134.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
133.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
133.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
133.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
132.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
131.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
131.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
131.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
127.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
118.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
116.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
115.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
114.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
111.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
109.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
107.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
102.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
97.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
96.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
95.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
92.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
90.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
87.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
79.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
79.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
77.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
75.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
73.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
62.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
61.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
56.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HPN is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
216.9
Number of samples
231
Samples
Sample
Description
TPM
DO45229
0 years, male, NA, stage:1, alive, 990 days
733.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
710.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
651.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
646.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
639.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
587.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
583.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
529.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
525.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
512.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
499.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
491.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
449.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
446.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
424.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
415.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
407.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
404.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
398.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
398.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
396.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
395.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
386.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
378.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
375.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
373.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
372.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
369.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
368.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
367.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
362.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
351.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
341.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
337.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
332.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
329.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
325.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
324.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
324.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
323.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
322.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
320.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
315.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
315.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
314.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
313.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
313.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
306.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
300.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
298.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
296.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
296.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
294.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
293.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
287.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
284.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
283.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
280.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
274.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
273.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
268.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
265.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
261.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
260.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
260.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
256.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
256.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
255.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
253.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
253.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
251.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
249.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
245.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
242.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
240.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
240.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
240.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
237.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
236.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
234.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
234.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
233.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
232.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
231.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
230.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
229.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
229.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
228.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
228.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
227.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
227.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
226.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
222.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
221.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
221.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
220.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
220.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
219.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
218.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
217.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
217.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
217.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
216.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
214.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
211.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
209.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
209.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
208.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
208.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
208.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
206.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
206.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
205.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
204.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
204.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
204.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
203.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
203.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
201.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
201.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
200.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
200.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
199.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
198.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
198.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
196.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
195.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
194.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
193.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
192.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
188.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
186.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
186.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
181.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
181.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
179.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
178.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
178.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
175.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
174.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
173.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
171.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
171.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
167.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
166.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
164.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
164.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
163.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
163.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
162.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
162.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
162.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
156.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
154.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
151.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
151.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
149.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
148.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
145.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
145.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
145.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
144.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
144.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
142.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
141.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
141.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
137.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
134.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
134.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
131.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
131.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
128.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
126.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
125.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
125.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
124.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
121.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
117.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
117.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
116.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
116.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
115.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
114.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
113.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
109.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
108.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
108.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
107.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
104.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
102.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
102.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
101.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
100.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
100.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
97.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
93.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
89.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
84.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
75.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
73.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
71.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
65.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
64.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
62.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
60.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
53.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
51.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
49.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.5
487
Tumor
1.1
112
Tumor
0.9
343
Tumor
0.7
393
Tumor
0.7
443
Tumor
0.7
148
Normal
0.6
186
Normal
0.6
363
Tumor
0.6
517
Tumor
0.6
162
Normal
0.6
341
Tumor
0.6
298
Normal
0.5
635
Tumor
0.5
523
Tumor
0.5
172
Normal
0.5
445
Tumor
0.5
481
Tumor
0.5
425
Tumor
0.5
527
Tumor
0.5
921
Tumor
0.5
1025
Tumor
0.5
737
Tumor
0.5
636
Normal
0.5
745
Tumor
0.5
342
Normal
0.5
223
Tumor
0.4
477
Tumor
0.4
271
Tumor
0.4
452
Normal
0.4
124
Normal
0.4
111
Normal
0.4
813
Tumor
0.4
332
Normal
0.4
746
Normal
0.4
877
Tumor
0.4
436
Normal
0.4
426
Normal
0.4
285
Tumor
0.4
267
Tumor
0.4
952
Normal
0.4
911
Tumor
0.4
967
Tumor
0.4
314
Normal
0.3
221
Tumor
0.3
755
Tumor
0.3
568
Normal
0.3
554
Normal
0.3
462
Normal
0.3
553
Tumor
0.3
482
Normal
0.3
416
Normal
0.3
195
Tumor
0.3
414
Normal
0.3
648
Normal
0.3
222
Normal
0.3
472
Normal
0.3
272
Normal
0.3
955
Tumor
0.3
132
Normal
0.3
258
Normal
0.3
368
Normal
0.3
354
Normal
0.3
464
Normal
0.3
484
Normal
0.3
192
Normal
0.3
344
Normal
0.3
114
Normal
0.3
664
Normal
0.3
518
Normal
0.2
361
Tumor
0.2
136
Normal
0.2
744
Normal
0.2
666
Normal
0.2
218
Normal
0.2
743
Tumor
0.2
778
Normal
0.2
432
Normal
0.2
196
Normal
0.2
413
Tumor
0.2
365
Tumor
0.2
515
Tumor
0.2
488
Normal
0.2
642
Normal
0.2
474
Normal
0.2
387
Tumor
0.2
865
Tumor
0.2
878
Normal
0.2
446
Normal
0.2
573
Tumor
0.2
278
Normal
0.2
376
Normal
0.2
422
Normal
0.2
618
Normal
0.2
428
Normal
0.2
1041
Tumor
0.2
137
Tumor
0.2
227
Tumor
0.2
262
Normal
0.2
128
Normal
0.2
356
Normal
0.2
232
Normal
0.2
353
Tumor
0.2
415
Tumor
0.2
141
Tumor
0.2
228
Normal
0.2
456
Normal
0.2
364
Normal
0.2
392
Normal
0.2
261
Tumor
0.2
327
Tumor
0.2
431
Tumor
0.1
433
Tumor
0.1
977
Tumor
0.1
138
Normal
0.1
534
Normal
0.1
564
Normal
0.1
975
Tumor
0.1
938
Normal
0.1
328
Normal
0.1
944
Normal
0.1
213
Tumor
0.1
146
Normal
0.1
615
Tumor
0.1
394
Normal
0.1
672
Normal
0.1
412
Normal
0.1
823
Tumor
0.1
574
Normal
0.1
217
Tumor
0.1
424
Normal
0.1
388
Normal
0.1
214
Normal
0.1
421
Tumor
0.1
858
Normal
0.1
662
Normal
0.1
862
Normal
0.1
1026
Normal
0.1
526
Normal
0.1
866
Normal
0.1
471
Tumor
0.1
358
Normal
0.1
713
Tumor
0.1
396
Normal
0.1
277
Tumor
0.1
628
Normal
0.1
528
Normal
0.1
616
Normal
0.1
863
Tumor
0.1
142
Normal
0.1
546
Normal
0.1
463
Tumor
0.1
956
Normal
0.1
696
Normal
0.1
742
Normal
0.1
777
Tumor
0.1
191
Tumor
0.1
366
Normal
0.1
617
Tumor
0.0
785
Tumor
0.0
466
Normal
0.0
423
Tumor
0.0
983
Tumor
0.0
113
Tumor
0.0
231
Tumor
0.0
545
Tumor
0.0
874
Normal
0.0
352
Normal
0.0
954
Normal
0.0
818
Normal
0.0
533
Tumor
0.0
468
Normal
0.0
286
Normal
0.0
188
Normal
0.0
714
Normal
0.0
867
Tumor
0.0
914
Normal
0.0
873
Tumor
0.0
444
Normal
0.0
386
Normal
0.0
126
Normal
0.0
493
Tumor
0.0
756
Normal
0.0
362
Normal
0.0
824
Normal
0.0
268
Normal
0.0
882
Normal
0.0
671
Tumor
0.0
966
Normal
0.0
312
Normal
0.0
1022
Normal
0.0
557
Tumor
0.0
572
Normal
0.0
494
Normal
0.0
816
Normal
-0.1
434
Normal
-0.1
567
Tumor
-0.1
497
Tumor
-0.1
145
Tumor
-0.1
738
Normal
-0.1
558
Normal
-0.1
817
Tumor
-0.1
451
Tumor
-0.1
1045
Tumor
-0.1
883
Tumor
-0.1
857
Tumor
-0.1
786
Normal
-0.1
1021
Tumor
-0.1
212
Normal
-0.1
185
Tumor
-0.1
297
Tumor
-0.1
147
Tumor
-0.1
723
Tumor
-0.1
1028
Normal
-0.1
538
Normal
-0.1
915
Tumor
-0.1
728
Normal
-0.1
135
Tumor
-0.1
951
Tumor
-0.1
627
Tumor
-0.1
715
Tumor
-0.1
492
Normal
-0.1
123
Tumor
-0.1
224
Normal
-0.1
964
Normal
-0.1
465
Tumor
-0.1
1027
Tumor
-0.1
881
Tumor
-0.1
864
Normal
-0.2
125
Tumor
-0.2
868
Normal
-0.2
367
Tumor
-0.2
1042
Normal
-0.2
284
Normal
-0.2
516
Normal
-0.2
814
Normal
-0.2
1016
Normal
-0.2
127
Tumor
-0.2
861
Tumor
-0.2
727
Tumor
-0.2
498
Normal
-0.2
1032
Normal
-0.2
686
Normal
-0.2
685
Tumor
-0.2
461
Tumor
-0.2
937
Tumor
-0.2
663
Tumor
-0.2
924
Normal
-0.2
473
Tumor
-0.2
331
Tumor
-0.2
982
Normal
-0.2
171
Tumor
-0.2
963
Tumor
-0.2
1046
Normal
-0.3
563
Tumor
-0.3
976
Normal
-0.3
395
Tumor
-0.3
698
Normal
-0.3
355
Tumor
-0.3
131
Tumor
-0.3
815
Tumor
-0.3
968
Normal
-0.3
851
Tumor
-0.3
926
Normal
-0.3
884
Normal
-0.3
478
Normal
-0.3
722
Normal
-0.3
958
Normal
-0.3
981
Tumor
-0.3
411
Tumor
-0.3
384
Normal
-0.3
697
Tumor
-0.3
455
Tumor
-0.3
513
Tumor
-0.3
925
Tumor
-0.4
257
Tumor
-0.4
913
Tumor
-0.4
1031
Tumor
-0.4
716
Normal
-0.4
852
Normal
-0.4
448
Normal
-0.4
447
Tumor
-0.4
427
Tumor
-0.4
514
Normal
-0.4
922
Normal
-0.4
524
Normal
-0.4
1015
Tumor
-0.4
984
Normal
-0.4
357
Tumor
-0.4
1043
Tumor
-0.4
912
Normal
-0.4
467
Tumor
-0.4
161
Tumor
-0.4
571
Tumor
-0.4
721
Tumor
-0.5
1014
Normal
-0.5
187
Tumor
-0.5
661
Tumor
-0.5
918
Normal
-0.5
391
Tumor
-0.5
965
Tumor
-0.5
641
Tumor
-0.5
647
Tumor
-0.5
435
Tumor
-0.5
923
Tumor
-0.5
483
Tumor
-0.6
741
Tumor
-0.6
665
Tumor
-0.7
1044
Normal
-0.7
916
Normal
-0.7
385
Tumor
-0.7
383
Tumor
-0.7
351
Tumor
-0.7
957
Tumor
-0.8
313
Tumor
-0.9
978
Normal
-0.9
375
Tumor
-0.9
536
Normal
-0.9
943
Tumor
-0.9
953
Tumor
-1.0
491
Tumor
-1.0
537
Tumor
-1.0
525
Tumor
-1.0
311
Tumor
-1.1
724
Normal
-1.1
1013
Tumor
-1.2
283
Tumor
-1.2
535
Tumor
-1.4
917
Tumor
-1.5
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.