We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPF31 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
119.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
90.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
83.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
80.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
77.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
77.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
72.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
71.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
70.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
67.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
66.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
65.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
63.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
63.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
63.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
62.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
61.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
61.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
57.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
56.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
56.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
52.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
51.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
49.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
48.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
48.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
47.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
47.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
46.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
45.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
45.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
45.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
44.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
43.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
43.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
41.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
41.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
41.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
40.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
40.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
40.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
38.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
37.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
36.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
31.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
30.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPF31 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.3
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
71.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
63.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
63.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
62.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
59.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
48.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
47.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
45.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
45.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
41.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
39.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
36.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.0
967
Tumor
0.9
497
Tumor
0.8
965
Tumor
0.8
131
Tumor
0.8
425
Tumor
0.8
1031
Tumor
0.7
661
Tumor
0.7
473
Tumor
0.7
647
Tumor
0.7
285
Tumor
0.7
123
Tumor
0.7
865
Tumor
0.6
983
Tumor
0.5
355
Tumor
0.5
1025
Tumor
0.5
517
Tumor
0.5
1021
Tumor
0.5
431
Tumor
0.5
695
Tumor
0.5
877
Tumor
0.4
411
Tumor
0.4
727
Tumor
0.4
221
Tumor
0.4
331
Tumor
0.4
112
Tumor
0.4
413
Tumor
0.4
737
Tumor
0.4
351
Tumor
0.4
951
Tumor
0.4
545
Tumor
0.4
815
Tumor
0.3
513
Tumor
0.3
341
Tumor
0.3
567
Tumor
0.3
515
Tumor
0.3
777
Tumor
0.3
487
Tumor
0.3
957
Tumor
0.3
523
Tumor
0.3
443
Tumor
0.3
671
Tumor
0.3
571
Tumor
0.3
724
Normal
0.3
427
Tumor
0.3
363
Tumor
0.3
977
Tumor
0.3
851
Tumor
0.3
817
Tumor
0.3
435
Tumor
0.3
141
Tumor
0.3
785
Tumor
0.3
921
Tumor
0.3
937
Tumor
0.3
1013
Tumor
0.2
471
Tumor
0.2
1043
Tumor
0.2
465
Tumor
0.2
433
Tumor
0.2
267
Tumor
0.2
271
Tumor
0.2
813
Tumor
0.2
715
Tumor
0.2
975
Tumor
0.2
663
Tumor
0.2
881
Tumor
0.2
395
Tumor
0.2
283
Tumor
0.2
423
Tumor
0.2
161
Tumor
0.2
393
Tumor
0.2
147
Tumor
0.2
573
Tumor
0.2
261
Tumor
0.2
227
Tumor
0.2
873
Tumor
0.2
385
Tumor
0.2
1015
Tumor
0.1
953
Tumor
0.1
477
Tumor
0.1
483
Tumor
0.1
135
Tumor
0.1
713
Tumor
0.1
635
Tumor
0.1
137
Tumor
0.1
963
Tumor
0.1
923
Tumor
0.1
447
Tumor
0.1
277
Tumor
0.1
383
Tumor
0.1
913
Tumor
0.1
217
Tumor
0.1
463
Tumor
0.1
361
Tumor
0.1
857
Tumor
0.1
537
Tumor
0.1
867
Tumor
0.1
533
Tumor
0.1
461
Tumor
0.1
211
Tumor
0.1
223
Tumor
0.1
744
Normal
0.1
665
Tumor
0.1
171
Tumor
0.1
313
Tumor
0.1
563
Tumor
0.1
327
Tumor
0.0
445
Tumor
0.0
943
Tumor
0.0
455
Tumor
0.0
615
Tumor
0.0
387
Tumor
0.0
415
Tumor
0.0
391
Tumor
0.0
297
Tumor
0.0
113
Tumor
0.0
526
Normal
0.0
883
Tumor
0.0
481
Tumor
0.0
911
Tumor
0.0
365
Tumor
0.0
714
Normal
0.0
535
Tumor
0.0
357
Tumor
0.0
145
Tumor
0.0
472
Normal
0.0
1041
Tumor
0.0
467
Tumor
0.0
1032
Normal
0.0
527
Tumor
0.0
1026
Normal
0.0
944
Normal
0.0
925
Tumor
0.0
1028
Normal
0.0
353
Tumor
0.0
436
Normal
0.0
231
Tumor
0.0
814
Normal
0.0
557
Tumor
0.0
514
Normal
0.0
716
Normal
0.0
696
Normal
0.0
686
Normal
0.0
721
Tumor
0.0
553
Tumor
0.0
516
Normal
0.0
187
Tumor
0.0
968
Normal
0.0
127
Tumor
0.0
1022
Normal
0.0
185
Tumor
0.0
451
Tumor
0.0
375
Tumor
0.0
912
Normal
0.0
1046
Normal
0.0
966
Normal
0.0
984
Normal
-0.1
1042
Normal
-0.1
1045
Tumor
-0.1
491
Tumor
-0.1
462
Normal
-0.1
955
Tumor
-0.1
191
Tumor
-0.1
922
Normal
-0.1
384
Normal
-0.1
641
Tumor
-0.1
444
Normal
-0.1
755
Tumor
-0.1
484
Normal
-0.1
862
Normal
-0.1
868
Normal
-0.1
878
Normal
-0.1
1016
Normal
-0.1
917
Tumor
-0.1
742
Normal
-0.1
125
Tumor
-0.1
492
Normal
-0.1
142
Normal
-0.1
818
Normal
-0.1
981
Tumor
-0.1
525
Tumor
-0.1
915
Tumor
-0.1
866
Normal
-0.1
864
Normal
-0.1
786
Normal
-0.1
524
Normal
-0.1
448
Normal
-0.1
412
Normal
-0.1
863
Tumor
-0.1
367
Tumor
-0.1
636
Normal
-0.1
488
Normal
-0.1
498
Normal
-0.1
1014
Normal
-0.1
964
Normal
-0.1
627
Tumor
-0.1
466
Normal
-0.1
364
Normal
-0.1
518
Normal
-0.1
858
Normal
-0.1
478
Normal
-0.1
172
Normal
-0.1
474
Normal
-0.1
698
Normal
-0.1
536
Normal
-0.1
311
Tumor
-0.1
823
Tumor
-0.1
723
Tumor
-0.1
421
Tumor
-0.1
162
Normal
-0.1
494
Normal
-0.1
824
Normal
-0.1
534
Normal
-0.1
434
Normal
-0.1
286
Normal
-0.1
328
Normal
-0.1
213
Tumor
-0.1
376
Normal
-0.1
738
Normal
-0.1
493
Tumor
-0.1
426
Normal
-0.1
224
Normal
-0.1
111
Normal
-0.1
396
Normal
-0.1
298
Normal
-0.2
388
Normal
-0.2
394
Normal
-0.2
356
Normal
-0.2
685
Tumor
-0.2
861
Tumor
-0.2
314
Normal
-0.2
386
Normal
-0.2
756
Normal
-0.2
368
Normal
-0.2
978
Normal
-0.2
352
Normal
-0.2
628
Normal
-0.2
392
Normal
-0.2
884
Normal
-0.2
697
Tumor
-0.2
446
Normal
-0.2
672
Normal
-0.2
554
Normal
-0.2
746
Normal
-0.2
954
Normal
-0.2
616
Normal
-0.2
414
Normal
-0.2
482
Normal
-0.2
148
Normal
-0.2
958
Normal
-0.2
422
Normal
-0.2
882
Normal
-0.2
228
Normal
-0.2
128
Normal
-0.2
214
Normal
-0.2
728
Normal
-0.2
918
Normal
-0.2
428
Normal
-0.2
924
Normal
-0.2
146
Normal
-0.2
257
Tumor
-0.2
914
Normal
-0.2
874
Normal
-0.2
362
Normal
-0.2
538
Normal
-0.2
1044
Normal
-0.2
416
Normal
-0.2
188
Normal
-0.2
218
Normal
-0.2
852
Normal
-0.2
284
Normal
-0.2
982
Normal
-0.2
192
Normal
-0.2
262
Normal
-0.2
558
Normal
-0.2
938
Normal
-0.2
424
Normal
-0.2
952
Normal
-0.2
186
Normal
-0.2
232
Normal
-0.2
568
Normal
-0.2
528
Normal
-0.2
366
Normal
-0.2
138
Normal
-0.2
778
Normal
-0.2
268
Normal
-0.2
956
Normal
-0.2
126
Normal
-0.2
722
Normal
-0.2
196
Normal
-0.2
114
Normal
-0.2
617
Tumor
-0.2
272
Normal
-0.2
618
Normal
-0.2
432
Normal
-0.3
741
Tumor
-0.3
648
Normal
-0.3
662
Normal
-0.3
212
Normal
-0.3
344
Normal
-0.3
546
Normal
-0.3
312
Normal
-0.3
278
Normal
-0.3
916
Normal
-0.3
222
Normal
-0.3
332
Normal
-0.3
976
Normal
-0.3
1027
Tumor
-0.3
642
Normal
-0.3
572
Normal
-0.3
664
Normal
-0.3
816
Normal
-0.3
136
Normal
-0.3
926
Normal
-0.3
564
Normal
-0.3
132
Normal
-0.3
745
Tumor
-0.3
354
Normal
-0.3
574
Normal
-0.3
195
Tumor
-0.3
452
Normal
-0.3
124
Normal
-0.3
258
Normal
-0.3
468
Normal
-0.3
464
Normal
-0.3
358
Normal
-0.3
666
Normal
-0.4
343
Tumor
-0.4
342
Normal
-0.4
456
Normal
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
