MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA Brain:21.4 nTPM
GTEx:16.2 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:21.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2219 Male, age 76, both hemispheres 22.8
2828 Female, age 72, unknown 22.7
2019 Male, age 18, unknown 19.8
2411 Female, age 72, unknown 19.1
1870 Female, age 42, unknown 18.3
1833 Male, age 53, unknown 18.0
1827 Male, age 72, unknown 16.6
1830 Male, age 51, unknown 16.6
2586 Male, age 75, left hemisphere 16.1
2666 Male, age 74, left hemisphere 9.2
Dorsal raphe nucleus
nTPM: 20.2
2750 Male, age 76, both hemispheres 23.3
2016 Female, age 72, unknown 23.1
2298 Female, age 72, unknown 19.0
1828 Male, age 53, unknown 17.8
2047 Male, age 72, unknown 17.6
Inferior colliculus
nTPM: 16.2
1848 Female, age 42, unknown 16.9
1890 Male, age 53, unknown 16.9
2097 Female, age 72, unknown 15.6
2849 Male, age 72, unknown 15.3
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Periaquaductal grey, anterior
nTPM: 17.1
2502 Female, age 75, unknown 18.4
1795 Male, age 51, unknown 17.6
1947 Male, age 18, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 18.8
2464 Female, age 72, unknown 20.7
2850 Male, age 76, both hemispheres 19.3
1840 Male, age 53, unknown 18.4
1831 Male, age 72, unknown 16.8
Periaquaductal grey, lateral
nTPM: 18.3
2140 Male, age 76, both hemispheres 20.8
2272 Male, age 74, both hemispheres 17.1
2053 Male, age 18, unknown 16.8
Pretectal area
nTPM: 19.1
2667 Female, age 75, unknown 25.4
2273 Male, age 74, both hemispheres 22.8
1817 Female, age 42, unknown 19.7
1815 Male, age 53, unknown 19.5
2007 Male, age 72, unknown 19.4
2224 Female, age 72, unknown 18.8
2316 Male, age 76, right hemisphere 18.5
1944 Female, age 72, unknown 17.1
2407 Male, age 75, both hemispheres 16.4
1816 Male, age 51, unknown 16.3
2825 Male, age 18, unknown 15.6
Red nucleus
nTPM: 21.4
2823 Male, age 76, right hemisphere 25.4
1865 Male, age 51, unknown 24.6
2769 Male, age 72, unknown 23.7
1904 Male, age 53, unknown 23.5
2503 Female, age 72, unknown 23.0
1821 Female, age 72, unknown 21.7
1954 Female, age 42, unknown 21.7
2227 Male, age 72, unknown 20.7
2725 Female, age 75, unknown 20.4
2785 Male, age 18, unknown 20.2
2588 Male, age 74, left hemisphere 16.8
2584 Male, age 75, left hemisphere 14.6
Substantia nigra
nTPM: 18.1
1916 Female, age 42, unknown 23.2
2699 Male, age 18, unknown 22.6
1851 Male, age 51, unknown 21.7
2241 Male, age 72, unknown 19.5
1889 Female, age 72, unknown 18.7
2590 Female, age 75, unknown 17.9
2665 Male, age 74, both hemispheres 15.9
1941 Male, age 53, unknown 14.5
2409 Female, age 72, unknown 13.8
2583 Male, age 75, right hemisphere 13.3
Superior colliculus
nTPM: 17.7
1796 Male, age 53, unknown 21.5
1895 Male, age 76, right hemisphere 21.5
1913 Female, age 42, unknown 19.9
1995 Male, age 72, unknown 19.8
2261 Male, age 18, unknown 18.5
2587 Male, age 74, left hemisphere 17.7
2087 Female, age 72, unknown 17.4
2664 Male, age 75, both hemispheres 14.5
1839 Male, age 51, unknown 14.1
2668 Female, age 75, unknown 12.3
Ventral tegmental area
nTPM: 18.1
2218 Male, age 76, both hemispheres 18.9
1942 Male, age 51, unknown 18.6
2410 Female, age 72, unknown 18.4
1915 Female, age 42, unknown 18.1
2223 Female, age 72, unknown 18.1
2021 Male, age 53, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.2
Samples: 139

Max nTPM: 57.6
Min nTPM: 7.1
Std nTPM: 6.7
Median nTPM: 14.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 57.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 44.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 32.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 29.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 28.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 26.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 26.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 25.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 25.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.2
Samples: 4

Max nTPM: 72.5
Min nTPM: 48.1
Sample A Female 69.2
Sample B Female 72.5
Sample C Male 48.1
Sample D Male 51.1
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 103.5
Min nTPM: 39.1
Sample A Female 103.5
Sample B Female 56.0
Sample C Male 43.2
Sample D Male 39.1
Periaqueductal gray
nTPM: 56.2
Samples: 3

Max nTPM: 68.2
Min nTPM: 44.6
Sample B Female 68.2
Sample C Male 55.7
Sample D Male 44.6
Superior colliculi
nTPM: 56.7
Samples: 4

Max nTPM: 93.0
Min nTPM: 39.6
Sample A Female 93.0
Sample B Female 45.0
Sample C Male 39.6
Sample D Male 49.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 22.4
Min nTPM: 19.2
Sample A Male 22.4
Sample B Male 19.2
Sample C Female 21.5
Sample D Female 22.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69289039 Antisense, RP_050407_02_C08, Mouse strain C57BL/6J (56 days, male) 0.6

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