MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:173.5 nTPM
HPA Brain:236.5 nTPM
GTEx:173.5 nTPM
FANTOM5:83.6 Scaled Tags Per Million
Pig:189.6 nTPM
Mouse:403.6 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 236.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 201.1
2666 Male, age 74, left hemisphere 277.8
2586 Male, age 75, left hemisphere 245.9
2019 Male, age 18, unknown 227.3
1827 Male, age 72, unknown 226.8
2828 Female, age 72, unknown 206.9
2411 Female, age 72, unknown 195.5
2219 Male, age 76, both hemispheres 182.0
1870 Female, age 42, unknown 160.5
1833 Male, age 53, unknown 149.6
1830 Male, age 51, unknown 138.8
Dorsal raphe nucleus
nTPM: 185.2
2298 Female, age 72, unknown 228.8
2047 Male, age 72, unknown 194.7
1828 Male, age 53, unknown 177.3
2750 Male, age 76, both hemispheres 175.8
2016 Female, age 72, unknown 149.5
Inferior colliculus
nTPM: 177.0
2097 Female, age 72, unknown 219.3
1890 Male, age 53, unknown 178.2
1848 Female, age 42, unknown 167.1
2849 Male, age 72, unknown 143.5
Median raphe nucleus
nTPM: 185.9
2220 Male, age 76, midline 185.9
Periaquaductal grey, anterior
nTPM: 202.9
1795 Male, age 51, unknown 232.2
2502 Female, age 75, unknown 189.3
1947 Male, age 18, unknown 187.2
Periaquaductal grey, dorsal
nTPM: 167.0
1831 Male, age 72, unknown 182.6
1840 Male, age 53, unknown 174.3
2464 Female, age 72, unknown 161.2
2850 Male, age 76, both hemispheres 149.8
Periaquaductal grey, lateral
nTPM: 159.4
2053 Male, age 18, unknown 174.2
2272 Male, age 74, both hemispheres 152.6
2140 Male, age 76, both hemispheres 151.5
Pretectal area
nTPM: 236.5
1816 Male, age 51, unknown 356.5
1944 Female, age 72, unknown 322.7
2007 Male, age 72, unknown 316.0
1817 Female, age 42, unknown 307.9
1815 Male, age 53, unknown 264.4
2667 Female, age 75, unknown 216.3
2407 Male, age 75, both hemispheres 186.2
2224 Female, age 72, unknown 172.6
2825 Male, age 18, unknown 159.4
2273 Male, age 74, both hemispheres 154.2
2316 Male, age 76, right hemisphere 145.5
Red nucleus
nTPM: 176.2
2785 Male, age 18, unknown 222.3
2584 Male, age 75, left hemisphere 206.8
1821 Female, age 72, unknown 189.5
2588 Male, age 74, left hemisphere 184.9
2503 Female, age 72, unknown 177.1
1954 Female, age 42, unknown 169.2
2227 Male, age 72, unknown 162.8
1904 Male, age 53, unknown 162.7
2769 Male, age 72, unknown 162.3
1865 Male, age 51, unknown 160.1
2725 Female, age 75, unknown 159.5
2823 Male, age 76, right hemisphere 156.8
Substantia nigra
nTPM: 215.1
1916 Female, age 42, unknown 275.7
1941 Male, age 53, unknown 257.5
1889 Female, age 72, unknown 253.5
1851 Male, age 51, unknown 235.6
2583 Male, age 75, right hemisphere 222.7
2665 Male, age 74, both hemispheres 218.5
2241 Male, age 72, unknown 184.5
2590 Female, age 75, unknown 179.8
2409 Female, age 72, unknown 161.7
2699 Male, age 18, unknown 161.5
Superior colliculus
nTPM: 215.2
2668 Female, age 75, unknown 300.4
2087 Female, age 72, unknown 285.4
2261 Male, age 18, unknown 260.2
1796 Male, age 53, unknown 231.8
2664 Male, age 75, both hemispheres 209.7
1913 Female, age 42, unknown 184.5
1995 Male, age 72, unknown 180.1
1895 Male, age 76, right hemisphere 174.3
2587 Male, age 74, left hemisphere 162.9
1839 Male, age 51, unknown 162.6
Ventral tegmental area
nTPM: 196.8
2410 Female, age 72, unknown 227.4
1915 Female, age 42, unknown 218.6
2218 Male, age 76, both hemispheres 211.4
1942 Male, age 51, unknown 191.9
2021 Male, age 53, unknown 169.5
2223 Female, age 72, unknown 161.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 173.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 173.5
Samples: 139

Max nTPM: 374.4
Min nTPM: 48.2
Std nTPM: 64.3
Median nTPM: 165.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 374.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 354.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 352.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 349.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 344.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 336.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 322.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 306.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 293.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 272.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 253.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.6
FF:10158-103A5 76 years, female 83.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 189.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 167.7
Samples: 4

Max nTPM: 225.3
Min nTPM: 99.2
Sample A Female 225.3
Sample B Female 133.0
Sample C Male 213.2
Sample D Male 99.2
Midbrain
nTPM: 189.6
Samples: 4

Max nTPM: 302.3
Min nTPM: 137.7
Sample A Female 148.2
Sample B Female 137.7
Sample C Male 302.3
Sample D Male 170.2
Periaqueductal gray
nTPM: 119.5
Samples: 3

Max nTPM: 142.9
Min nTPM: 100.8
Sample B Female 114.9
Sample C Male 142.9
Sample D Male 100.8
Superior colliculi
nTPM: 188.6
Samples: 4

Max nTPM: 237.8
Min nTPM: 149.8
Sample A Female 195.6
Sample B Female 149.8
Sample C Male 237.8
Sample D Male 171.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 403.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 403.6
Samples: 4

Max nTPM: 406.8
Min nTPM: 401.9
Sample A Male 402.7
Sample B Male 401.9
Sample C Female 406.8
Sample D Female 402.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
68667946 Antisense, RP_050203_01_B05, Mouse strain C57BL/6J (56 days, male) 14.2

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