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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LIG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LIG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.8
497
Tumor
1.5
463
Tumor
1.4
647
Tumor
1.4
953
Tumor
1.3
865
Tumor
1.3
967
Tumor
1.3
957
Tumor
1.3
567
Tumor
1.3
425
Tumor
1.2
357
Tumor
1.2
411
Tumor
1.0
431
Tumor
1.0
313
Tumor
1.0
211
Tumor
1.0
951
Tumor
0.9
277
Tumor
0.9
921
Tumor
0.9
663
Tumor
0.9
387
Tumor
0.9
1013
Tumor
0.9
873
Tumor
0.8
413
Tumor
0.8
351
Tumor
0.8
435
Tumor
0.8
815
Tumor
0.8
341
Tumor
0.8
285
Tumor
0.8
527
Tumor
0.8
737
Tumor
0.8
161
Tumor
0.7
661
Tumor
0.7
213
Tumor
0.7
433
Tumor
0.7
331
Tumor
0.7
123
Tumor
0.7
1021
Tumor
0.7
635
Tumor
0.6
283
Tumor
0.6
523
Tumor
0.6
724
Normal
0.6
727
Tumor
0.6
385
Tumor
0.5
112
Tumor
0.5
131
Tumor
0.5
943
Tumor
0.5
883
Tumor
0.5
271
Tumor
0.5
923
Tumor
0.5
545
Tumor
0.5
473
Tumor
0.5
171
Tumor
0.5
1031
Tumor
0.5
517
Tumor
0.5
221
Tumor
0.5
877
Tumor
0.5
665
Tumor
0.4
467
Tumor
0.4
537
Tumor
0.4
267
Tumor
0.4
445
Tumor
0.4
571
Tumor
0.4
141
Tumor
0.4
881
Tumor
0.4
355
Tumor
0.4
814
Normal
0.3
813
Tumor
0.3
817
Tumor
0.3
127
Tumor
0.3
447
Tumor
0.3
125
Tumor
0.3
975
Tumor
0.3
553
Tumor
0.3
443
Tumor
0.3
297
Tumor
0.2
573
Tumor
0.2
695
Tumor
0.2
427
Tumor
0.2
983
Tumor
0.2
671
Tumor
0.2
465
Tumor
0.2
937
Tumor
0.2
615
Tumor
0.2
375
Tumor
0.2
481
Tumor
0.2
963
Tumor
0.2
393
Tumor
0.2
491
Tumor
0.2
383
Tumor
0.1
113
Tumor
0.1
231
Tumor
0.1
185
Tumor
0.1
311
Tumor
0.1
455
Tumor
0.1
755
Tumor
0.1
977
Tumor
0.1
493
Tumor
0.1
525
Tumor
0.1
343
Tumor
0.1
966
Normal
0.1
223
Tumor
0.1
535
Tumor
0.1
1027
Tumor
0.1
857
Tumor
0.1
423
Tumor
0.0
861
Tumor
0.0
421
Tumor
0.0
917
Tumor
0.0
715
Tumor
0.0
124
Normal
0.0
217
Tumor
0.0
697
Tumor
-0.1
126
Normal
-0.1
367
Tumor
-0.1
128
Normal
-0.1
1045
Tumor
-0.1
471
Tumor
-0.1
863
Tumor
-0.1
187
Tumor
-0.1
978
Normal
-0.1
434
Normal
-0.1
641
Tumor
-0.1
257
Tumor
-0.1
461
Tumor
-0.1
363
Tumor
-0.1
713
Tumor
-0.1
332
Normal
-0.1
777
Tumor
-0.1
114
Normal
-0.2
515
Tumor
-0.2
388
Normal
-0.2
147
Tumor
-0.2
353
Tumor
-0.2
743
Tumor
-0.2
195
Tumor
-0.2
741
Tumor
-0.2
444
Normal
-0.2
513
Tumor
-0.2
1015
Tumor
-0.2
462
Normal
-0.2
666
Normal
-0.2
823
Tumor
-0.2
483
Tumor
-0.2
268
Normal
-0.2
111
Normal
-0.2
298
Normal
-0.2
354
Normal
-0.2
278
Normal
-0.2
533
Tumor
-0.2
358
Normal
-0.2
451
Tumor
-0.2
262
Normal
-0.2
368
Normal
-0.2
477
Tumor
-0.2
344
Normal
-0.3
314
Normal
-0.3
386
Normal
-0.3
312
Normal
-0.3
192
Normal
-0.3
415
Tumor
-0.3
352
Normal
-0.3
981
Tumor
-0.3
1043
Tumor
-0.3
664
Normal
-0.3
228
Normal
-0.3
478
Normal
-0.3
721
Tumor
-0.3
685
Tumor
-0.3
487
Tumor
-0.3
456
Normal
-0.3
672
Normal
-0.3
272
Normal
-0.3
261
Tumor
-0.3
958
Normal
-0.3
422
Normal
-0.3
662
Normal
-0.3
488
Normal
-0.3
224
Normal
-0.3
563
Tumor
-0.3
955
Tumor
-0.3
145
Tumor
-0.3
284
Normal
-0.3
342
Normal
-0.3
188
Normal
-0.3
227
Tumor
-0.3
365
Tumor
-0.3
191
Tumor
-0.3
534
Normal
-0.3
392
Normal
-0.3
366
Normal
-0.3
258
Normal
-0.3
146
Normal
-0.3
1016
Normal
-0.3
516
Normal
-0.3
394
Normal
-0.3
964
Normal
-0.3
482
Normal
-0.3
498
Normal
-0.4
396
Normal
-0.4
984
Normal
-0.4
286
Normal
-0.4
426
Normal
-0.4
362
Normal
-0.4
416
Normal
-0.4
982
Normal
-0.4
851
Tumor
-0.4
1044
Normal
-0.4
376
Normal
-0.4
142
Normal
-0.4
492
Normal
-0.4
137
Tumor
-0.4
648
Normal
-0.4
858
Normal
-0.4
494
Normal
-0.4
384
Normal
-0.4
913
Tumor
-0.4
391
Tumor
-0.4
132
Normal
-0.4
785
Tumor
-0.4
867
Tumor
-0.4
484
Normal
-0.4
414
Normal
-0.4
925
Tumor
-0.4
138
Normal
-0.4
328
Normal
-0.4
162
Normal
-0.4
186
Normal
-0.4
232
Normal
-0.4
968
Normal
-0.4
214
Normal
-0.4
468
Normal
-0.4
698
Normal
-0.4
424
Normal
-0.5
954
Normal
-0.5
428
Normal
-0.5
212
Normal
-0.5
356
Normal
-0.5
364
Normal
-0.5
514
Normal
-0.5
956
Normal
-0.5
196
Normal
-0.5
172
Normal
-0.5
518
Normal
-0.5
1014
Normal
-0.5
738
Normal
-0.5
862
Normal
-0.5
472
Normal
-0.5
976
Normal
-0.5
546
Normal
-0.5
361
Tumor
-0.5
526
Normal
-0.5
148
Normal
-0.5
916
Normal
-0.5
884
Normal
-0.5
528
Normal
-0.5
722
Normal
-0.5
568
Normal
-0.5
222
Normal
-0.5
557
Tumor
-0.5
464
Normal
-0.5
395
Tumor
-0.6
1046
Normal
-0.6
446
Normal
-0.6
432
Normal
-0.6
536
Normal
-0.6
882
Normal
-0.6
572
Normal
-0.6
135
Tumor
-0.6
915
Tumor
-0.6
452
Normal
-0.6
564
Normal
-0.6
474
Normal
-0.6
524
Normal
-0.6
818
Normal
-0.6
714
Normal
-0.6
558
Normal
-0.6
554
Normal
-0.6
723
Tumor
-0.6
868
Normal
-0.6
716
Normal
-0.6
1042
Normal
-0.6
136
Normal
-0.6
742
Normal
-0.6
918
Normal
-0.6
218
Normal
-0.6
412
Normal
-0.6
756
Normal
-0.6
574
Normal
-0.6
938
Normal
-0.6
728
Normal
-0.6
778
Normal
-0.6
824
Normal
-0.6
914
Normal
-0.6
852
Normal
-0.6
696
Normal
-0.6
617
Tumor
-0.6
538
Normal
-0.7
1026
Normal
-0.7
1028
Normal
-0.7
618
Normal
-0.7
466
Normal
-0.7
864
Normal
-0.7
744
Normal
-0.7
745
Tumor
-0.7
628
Normal
-0.7
448
Normal
-0.7
878
Normal
-0.7
746
Normal
-0.7
627
Tumor
-0.7
912
Normal
-0.7
874
Normal
-0.7
786
Normal
-0.7
924
Normal
-0.7
616
Normal
-0.7
436
Normal
-0.8
866
Normal
-0.8
926
Normal
-0.8
1032
Normal
-0.8
816
Normal
-0.8
911
Tumor
-0.8
922
Normal
-0.8
642
Normal
-0.8
686
Normal
-0.8
952
Normal
-0.8
944
Normal
-0.9
1022
Normal
-0.9
327
Tumor
-0.9
636
Normal
-0.9
1025
Tumor
-0.9
1041
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
