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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAPA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
106.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
256.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
248.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
246.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
237.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
232.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
218.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
207.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
201.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
201.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
197.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
196.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
193.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
185.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
185.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
185.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
184.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
183.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
172.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
170.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
169.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
168.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
168.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
167.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
167.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
165.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
165.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
162.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
162.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
161.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
160.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
159.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
159.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
158.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
158.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
158.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
157.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
156.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
155.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
154.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
153.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
153.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
152.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
152.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
152.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
151.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
151.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
151.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
151.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
150.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
149.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
149.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
148.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
147.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
147.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
146.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
146.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
145.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
142.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
140.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
140.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
140.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
139.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
138.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
138.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
137.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
137.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
137.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
137.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
135.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
133.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
133.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
132.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
129.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
129.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
129.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
129.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
128.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
128.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
128.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
128.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
128.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
128.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
128.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
127.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
127.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
126.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
126.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
126.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
125.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
125.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
125.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
124.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
124.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
124.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
124.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
124.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
124.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
123.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
123.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
123.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
123.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
123.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
122.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
121.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
121.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
121.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
120.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
120.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
120.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
120.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
120.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
119.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
119.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
119.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
119.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
119.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
119.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
118.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
118.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
117.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
117.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
117.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
116.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
116.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
115.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
115.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
115.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
115.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
115.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
115.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
114.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
114.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
114.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
114.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
114.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
113.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
113.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
113.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
112.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
112.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
111.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
111.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
111.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
111.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
111.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
110.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
110.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
109.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
109.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
109.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
109.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
108.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
108.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
107.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
107.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
107.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
107.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
106.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
106.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
106.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
106.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
106.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
106.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
106.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
105.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
105.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
105.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
105.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
105.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
105.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
104.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
104.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
104.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
104.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
104.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
103.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
102.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
102.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
102.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
101.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
101.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
101.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
100.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
100.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
100.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
100.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
100.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
99.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
98.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
98.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
98.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
97.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
97.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
97.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
97.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
97.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
96.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
96.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
96.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
96.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
95.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
95.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
95.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
95.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
95.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
95.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
95.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
94.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
94.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
94.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
94.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
94.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
93.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
93.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
93.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
93.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
93.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
93.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
93.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
93.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
92.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
92.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
91.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
90.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
90.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
90.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
90.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
90.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
90.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
89.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
89.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
89.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
88.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
88.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
88.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
88.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
88.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
88.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
88.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
87.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
87.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
87.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
87.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
87.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
86.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
86.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
86.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
86.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
86.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
85.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
85.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
85.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
85.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
85.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
85.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
84.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
84.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
83.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
83.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
83.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
83.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
83.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
83.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
82.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
82.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
82.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
82.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
82.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
82.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
82.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
81.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
80.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
80.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
80.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
79.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
79.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
79.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
79.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
78.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
78.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
77.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
77.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
76.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
76.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
76.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
75.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
75.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
74.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
74.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
74.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
73.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
73.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
73.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
72.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
71.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
71.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
70.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
68.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
68.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
67.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
67.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
66.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
66.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
66.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
65.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
65.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
65.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
64.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
64.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
64.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
64.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
64.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
63.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
61.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
60.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
60.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
60.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
60.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
57.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
57.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
57.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
56.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
55.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
55.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
53.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
51.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
51.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
50.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
49.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
49.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
48.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
46.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
44.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
44.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
43.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
38.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
33.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NAPA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.4
Number of samples
231
Samples
Sample
Description
TPM
DO45099
0 years, male, NA, stage:3, alive, 1590 days
191.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
182.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
178.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
165.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
165.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
160.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
160.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
146.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
144.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
139.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
135.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
133.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
130.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
130.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
129.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
125.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
121.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
121.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
119.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
119.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
117.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
116.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
115.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
115.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
114.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
114.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
113.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
113.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
108.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
106.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
105.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
104.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
104.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
104.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
102.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
102.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
102.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
101.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
101.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
101.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
100.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
99.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
99.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
98.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
98.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
98.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
96.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
96.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
96.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
96.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
95.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
95.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
95.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
95.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
94.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
94.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
94.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
93.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
93.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
92.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
92.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
92.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
92.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
91.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
91.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
91.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
90.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
90.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
90.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
89.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
89.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
88.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
87.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
87.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
87.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
85.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
85.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
84.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
84.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
84.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
83.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
83.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
83.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
82.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
81.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
81.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
81.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
81.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
81.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
81.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
81.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
80.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
80.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
80.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
80.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
79.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
79.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
79.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
78.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
78.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
78.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
77.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
77.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
76.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
76.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
75.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
75.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
75.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
75.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
75.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
75.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
75.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
74.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
74.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
74.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
74.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
74.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
73.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
73.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
73.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
72.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
72.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
72.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
72.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
71.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
71.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
71.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
71.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
71.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
70.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
70.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
70.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
69.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
69.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
68.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
68.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
67.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
67.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
67.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
67.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
66.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
66.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
66.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
66.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
66.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
65.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
64.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
63.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
62.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
62.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
62.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
62.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
62.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
61.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
61.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
61.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
61.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
60.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
60.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
59.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
59.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
59.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
59.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
58.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
57.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
57.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
57.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
57.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
56.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
55.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
55.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
54.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
53.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
52.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
51.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
50.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
50.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
49.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
49.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
41.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
40.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
37.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
31.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
31.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.0
433
Tumor
1.0
745
Tumor
0.9
341
Tumor
0.9
1027
Tumor
0.9
567
Tumor
0.9
147
Tumor
0.8
863
Tumor
0.8
737
Tumor
0.8
481
Tumor
0.7
635
Tumor
0.5
257
Tumor
0.5
223
Tumor
0.4
445
Tumor
0.4
647
Tumor
0.4
527
Tumor
0.4
911
Tumor
0.4
573
Tumor
0.3
851
Tumor
0.3
981
Tumor
0.3
513
Tumor
0.3
231
Tumor
0.3
497
Tumor
0.3
915
Tumor
0.3
955
Tumor
0.3
383
Tumor
0.3
857
Tumor
0.3
283
Tumor
0.2
112
Tumor
0.2
755
Tumor
0.2
515
Tumor
0.2
353
Tumor
0.2
421
Tumor
0.2
261
Tumor
0.2
477
Tumor
0.2
967
Tumor
0.2
777
Tumor
0.2
365
Tumor
0.2
627
Tumor
0.2
956
Normal
0.2
262
Normal
0.2
953
Tumor
0.2
1013
Tumor
0.2
286
Normal
0.1
213
Tumor
0.1
1021
Tumor
0.1
878
Normal
0.1
222
Normal
0.1
436
Normal
0.1
615
Tumor
0.1
432
Normal
0.1
914
Normal
0.1
414
Normal
0.1
435
Tumor
0.1
518
Normal
0.1
232
Normal
0.1
356
Normal
0.1
446
Normal
0.1
314
Normal
0.1
128
Normal
0.1
744
Normal
0.1
785
Tumor
0.1
228
Normal
0.1
298
Normal
0.1
327
Tumor
0.1
865
Tumor
0.1
724
Normal
0.1
426
Normal
0.1
412
Normal
0.1
663
Tumor
0.1
148
Normal
0.1
938
Normal
0.1
132
Normal
0.1
474
Normal
0.1
816
Normal
0.1
861
Tumor
0.1
741
Tumor
0.1
1015
Tumor
0.1
258
Normal
0.1
864
Normal
0.1
746
Normal
0.1
392
Normal
0.1
924
Normal
0.1
1028
Normal
0.1
368
Normal
0.1
778
Normal
0.1
491
Tumor
0.1
866
Normal
0.1
952
Normal
0.1
428
Normal
0.1
172
Normal
0.1
966
Normal
0.1
212
Normal
0.1
738
Normal
0.1
636
Normal
0.1
517
Tumor
0.1
982
Normal
0.1
1016
Normal
0.1
434
Normal
0.1
332
Normal
0.1
922
Normal
0.1
125
Tumor
0.0
142
Normal
0.0
111
Normal
0.0
913
Tumor
0.0
1026
Normal
0.0
272
Normal
0.0
424
Normal
0.0
1022
Normal
0.0
278
Normal
0.0
1043
Tumor
0.0
284
Normal
0.0
964
Normal
0.0
466
Normal
0.0
416
Normal
0.0
862
Normal
0.0
171
Tumor
0.0
882
Normal
0.0
138
Normal
0.0
162
Normal
0.0
926
Normal
0.0
328
Normal
0.0
186
Normal
0.0
523
Tumor
0.0
824
Normal
0.0
526
Normal
0.0
376
Normal
0.0
462
Normal
0.0
362
Normal
0.0
617
Tumor
0.0
448
Normal
0.0
874
Normal
0.0
422
Normal
0.0
728
Normal
0.0
196
Normal
0.0
214
Normal
0.0
1014
Normal
0.0
858
Normal
0.0
427
Tumor
0.0
395
Tumor
0.0
113
Tumor
0.0
918
Normal
0.0
451
Tumor
0.0
135
Tumor
0.0
554
Normal
0.0
742
Normal
0.0
695
Tumor
0.0
494
Normal
0.0
1045
Tumor
0.0
472
Normal
0.0
944
Normal
0.0
357
Tumor
0.0
484
Normal
0.0
452
Normal
0.0
394
Normal
0.0
813
Tumor
0.0
342
Normal
0.0
188
Normal
0.0
136
Normal
0.0
218
Normal
0.0
344
Normal
0.0
313
Tumor
0.0
388
Normal
0.0
661
Tumor
0.0
217
Tumor
0.0
968
Normal
0.0
277
Tumor
0.0
568
Normal
0.0
618
Normal
0.0
628
Normal
0.0
698
Normal
0.0
916
Normal
0.0
268
Normal
0.0
366
Normal
0.0
492
Normal
0.0
358
Normal
0.0
137
Tumor
0.0
431
Tumor
0.0
868
Normal
0.0
384
Normal
0.0
954
Normal
0.0
285
Tumor
0.0
456
Normal
0.0
114
Normal
0.0
912
Normal
0.0
723
Tumor
-0.1
483
Tumor
-0.1
224
Normal
-0.1
976
Normal
-0.1
963
Tumor
-0.1
975
Tumor
-0.1
571
Tumor
-0.1
642
Normal
-0.1
648
Normal
-0.1
124
Normal
-0.1
873
Tumor
-0.1
393
Tumor
-0.1
662
Normal
-0.1
534
Normal
-0.1
312
Normal
-0.1
396
Normal
-0.1
984
Normal
-0.1
528
Normal
-0.1
697
Tumor
-0.1
488
Normal
-0.1
145
Tumor
-0.1
943
Tumor
-0.1
221
Tumor
-0.1
1046
Normal
-0.1
696
Normal
-0.1
524
Normal
-0.1
1042
Normal
-0.1
564
Normal
-0.1
364
Normal
-0.1
423
Tumor
-0.1
921
Tumor
-0.1
722
Normal
-0.1
574
Normal
-0.1
126
Normal
-0.1
546
Normal
-0.1
482
Normal
-0.1
713
Tumor
-0.1
297
Tumor
-0.1
721
Tumor
-0.1
957
Tumor
-0.1
464
Normal
-0.1
141
Tumor
-0.1
572
Normal
-0.1
465
Tumor
-0.1
1044
Normal
-0.1
666
Normal
-0.1
978
Normal
-0.1
958
Normal
-0.1
786
Normal
-0.1
185
Tumor
-0.1
756
Normal
-0.1
514
Normal
-0.1
884
Normal
-0.1
187
Tumor
-0.1
386
Normal
-0.1
493
Tumor
-0.1
686
Normal
-0.1
818
Normal
-0.1
468
Normal
-0.1
1041
Tumor
-0.1
867
Tumor
-0.1
727
Tumor
-0.1
852
Normal
-0.1
354
Normal
-0.1
146
Normal
-0.2
616
Normal
-0.2
538
Normal
-0.2
714
Normal
-0.2
525
Tumor
-0.2
361
Tumor
-0.2
192
Normal
-0.2
553
Tumor
-0.2
415
Tumor
-0.2
1032
Normal
-0.2
352
Normal
-0.2
461
Tumor
-0.2
557
Tumor
-0.2
267
Tumor
-0.2
664
Normal
-0.2
923
Tumor
-0.2
478
Normal
-0.2
195
Tumor
-0.2
977
Tumor
-0.2
516
Normal
-0.2
558
Normal
-0.2
536
Normal
-0.2
883
Tumor
-0.2
161
Tumor
-0.2
271
Tumor
-0.2
444
Normal
-0.2
127
Tumor
-0.2
498
Normal
-0.2
814
Normal
-0.2
123
Tumor
-0.2
387
Tumor
-0.2
537
Tumor
-0.2
965
Tumor
-0.2
716
Normal
-0.2
545
Tumor
-0.3
937
Tumor
-0.3
413
Tumor
-0.3
917
Tumor
-0.3
455
Tumor
-0.3
447
Tumor
-0.3
1025
Tumor
-0.3
1031
Tumor
-0.3
343
Tumor
-0.3
375
Tumor
-0.3
563
Tumor
-0.3
411
Tumor
-0.3
467
Tumor
-0.3
363
Tumor
-0.4
823
Tumor
-0.4
443
Tumor
-0.4
983
Tumor
-0.4
881
Tumor
-0.4
331
Tumor
-0.4
672
Normal
-0.4
355
Tumor
-0.4
391
Tumor
-0.4
877
Tumor
-0.5
191
Tumor
-0.5
743
Tumor
-0.5
311
Tumor
-0.5
487
Tumor
-0.5
385
Tumor
-0.5
685
Tumor
-0.5
211
Tumor
-0.6
533
Tumor
-0.6
351
Tumor
-0.6
367
Tumor
-0.6
471
Tumor
-0.6
227
Tumor
-0.6
641
Tumor
-0.6
815
Tumor
-0.6
473
Tumor
-0.6
817
Tumor
-0.6
925
Tumor
-0.6
951
Tumor
-0.7
463
Tumor
-0.7
715
Tumor
-0.7
665
Tumor
-0.8
131
Tumor
-0.9
671
Tumor
-0.9
535
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
