HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:84.7 nTPM
HPA Brain:92.2 nTPM
GTEx:84.7 nTPM
FANTOM5:122.5 Scaled Tags Per Million
Pig:88.2 nTPM
Mouse:67.2 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003928Antibody CAB004214
Glial cells LowLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 92.2
Sample id Sample description nTPM
Hippocampus
nTPM: 73.7
1898 Male, age 80, left hemisphere 84.0
2621 Female, age 67, right hemisphere 78.3
1855 Male, age 76, left hemisphere 73.8
2529 Female, age 94, left hemisphere 73.0
2148 Female, age 91, left hemisphere 72.6
1911 Female, age 85, right hemisphere 60.4
Dentate gyrus
nTPM: 74.8
2531 Female, age 67, both hemispheres 87.0
2530 Female, age 94, left hemisphere 83.5
2246 Female, age 85, both hemispheres 74.1
1927 Female, age 91, both hemispheres 72.1
2010 Male, age 76, both hemispheres 70.9
2528 Male, age 74, both hemispheres 61.0
Entorhinal gyrus
nTPM: 86.5
2764 Male, age 80, right hemisphere 101.8
2613 Female, age 94, left hemisphere 96.4
2686 Male, age 75, right hemisphere 89.0
1787 Male, age 76, left hemisphere 84.6
1938 Female, age 85, left hemisphere 82.4
2117 Female, age 91, right hemisphere 65.0
Hippocampus, CA1
nTPM: 75.3
2749 Male, age 80, left hemisphere 91.8
2045 Male, age 76, both hemispheres 84.8
1873 Female, age 85, both hemispheres 70.1
2527 Male, age 74, both hemispheres 67.1
2082 Female, age 91, right hemisphere 62.5
Hippocampus, CA2
nTPM: 74.3
1892 Male, age 76, both hemispheres 92.3
2437 Female, age 94, left hemisphere 84.3
1940 Female, age 85, left hemisphere 79.4
1963 Male, age 80, left hemisphere 67.4
2249 Male, age 74, both hemispheres 61.2
2113 Female, age 91, right hemisphere 60.9
Hippocampus, CA3
nTPM: 79.6
2620 Female, age 94, left hemisphere 90.2
1867 Male, age 76, both hemispheres 89.0
2861 Female, age 67, both hemispheres 86.9
2137 Male, age 80, left hemisphere 83.7
2436 Male, age 74, both hemispheres 64.4
1891 Female, age 85, both hemispheres 63.4
Parahippocampal cortex
nTPM: 82.1
2245 Female, age 91, both hemispheres 95.4
2532 Female, age 72, left hemisphere 95.3
1850 Male, age 80, both hemispheres 93.7
2622 Female, age 67, right hemisphere 89.1
1990 Female, age 91, right hemisphere 81.2
2692 Male, age 74, both hemispheres 74.6
2693 Female, age 94, both hemispheres 74.6
1933 Female, age 85, both hemispheres 74.3
2250 Female, age 67, right hemisphere 71.8
2018 Male, age 76, both hemispheres 70.6
Perirhinal gyrus
nTPM: 92.2
1794 Male, age 80, right hemisphere 97.8
1847 Female, age 91, left hemisphere 94.9
1841 Female, age 85, right hemisphere 90.8
2848 Male, age 76, right hemisphere 90.2
2521 Female, age 94, right hemisphere 87.1
Subiculum
nTPM: 70.8
2438 Female, age 94, left hemisphere 77.9
1901 Male, age 80, both hemispheres 74.5
2619 Male, age 74, both hemispheres 74.3
1977 Female, age 85, both hemispheres 71.1
2042 Male, age 76, both hemispheres 67.0
2729 Female, age 91, right hemisphere 60.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 84.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 84.7
Samples: 197

Max nTPM: 153.5
Min nTPM: 40.7
Std nTPM: 18.0
Median nTPM: 84.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 153.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 133.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 128.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 127.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 127.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 124.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 122.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 119.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 115.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 115.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 114.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 122.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 122.5
FF:10153-102I9 76 years, female 130.9
FF:10169-103B7 60 years, female 114.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 88.2
Pig sample Sample description nTPM
Subiculum
nTPM: 77.7
Samples: 4

Max nTPM: 102.5
Min nTPM: 66.7
Sample A Female 102.5
Sample B Female 68.8
Sample C Male 72.6
Sample D Male 66.7
Dorsal hippocampus
nTPM: 88.2
Samples: 4

Max nTPM: 115.3
Min nTPM: 67.1
Sample A Female 115.3
Sample B Female 87.0
Sample C Male 83.4
Sample D Male 67.1
Entorhinal cortex
nTPM: 78.9
Samples: 4

Max nTPM: 85.3
Min nTPM: 72.8
Sample A Female 84.0
Sample B Female 85.3
Sample C Male 73.3
Sample D Male 72.8
Ventral hippocampus
nTPM: 83.2
Samples: 4

Max nTPM: 101.8
Min nTPM: 56.8
Sample A Female 82.9
Sample B Female 56.8
Sample C Male 101.8
Sample D Male 91.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 67.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.6
Samples: 4

Max nTPM: 66.9
Min nTPM: 58.4
Sample A Male 63.5
Sample B Male 66.9
Sample C Female 61.4
Sample D Female 58.4
Hippocampal formation
nTPM: 67.2
Samples: 4

Max nTPM: 76.7
Min nTPM: 61.0
Sample A Male 61.0
Sample B Male 64.3
Sample C Female 66.9
Sample D Female 76.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
71496288 Antisense, RP_050913_04_C01, Mouse strain C57BL/6J (56 days, male) 0.3

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