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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SULT2A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
271.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
1987.1
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
1458.0
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
1366.5
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
1345.3
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
1295.8
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
1226.8
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
1163.0
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
1150.9
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
1107.5
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
1099.7
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
1003.3
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
962.5
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
933.1
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
880.0
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
862.6
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
828.1
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
818.1
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
761.1
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
741.9
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
721.2
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
718.4
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
712.5
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
705.6
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
701.0
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
696.3
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
688.4
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
674.2
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
661.2
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
646.3
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
639.3
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
624.4
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
612.2
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
608.9
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
603.7
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
595.7
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
587.8
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
585.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
583.6
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
576.2
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
575.2
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
574.0
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
565.9
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
565.0
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
555.4
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
553.3
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
535.3
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
533.2
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
527.4
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
524.7
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
521.1
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
520.9
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
519.0
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
510.4
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
509.3
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
509.1
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
488.9
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
486.3
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
470.2
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
469.5
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
462.7
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
452.2
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
451.2
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
446.1
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
441.7
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
440.3
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
436.4
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
434.7
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
432.7
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
430.0
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
424.7
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
423.0
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
422.0
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
416.3
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
414.2
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
402.9
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
394.5
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
390.7
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
387.4
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
387.3
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
384.1
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
383.5
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
383.2
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
379.0
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
376.3
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
375.2
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
372.3
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
371.7
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
360.3
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
358.9
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
358.0
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
355.6
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
355.4
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
355.0
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
353.5
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
350.8
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
350.6
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
347.6
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
347.1
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
341.8
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
341.6
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
341.2
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
340.9
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
339.1
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
334.5
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
333.1
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
332.1
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
330.5
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
328.6
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
326.8
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
325.4
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
324.3
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
322.5
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
319.8
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
319.4
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
318.1
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
317.9
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
317.7
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
316.9
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
316.2
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
315.3
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
314.5
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
313.5
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
311.2
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
310.4
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
302.6
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
301.9
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
301.0
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
300.9
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
299.9
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
299.8
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
299.5
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
298.7
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
293.5
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
292.1
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
289.0
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
286.7
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
285.7
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
285.6
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
284.9
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
276.7
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
275.5
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
274.7
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
263.6
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
262.1
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
258.1
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
257.8
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
257.6
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
257.2
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
256.1
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
252.7
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
250.7
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
249.4
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
249.1
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
246.3
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
246.2
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
244.9
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
243.7
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
238.0
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
237.1
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
236.6
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
236.2
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
234.0
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
231.4
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
231.2
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
230.6
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
228.8
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
225.6
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
225.0
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
224.2
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
223.8
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
223.0
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
220.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
219.9
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
217.8
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
217.7
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
211.9
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
209.9
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
206.8
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
206.8
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
205.8
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
205.6
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
202.4
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
202.3
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
199.4
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
197.6
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
195.2
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
189.9
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
189.3
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
187.2
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
184.6
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
181.8
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
180.6
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
179.6
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
178.5
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
176.1
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
175.4
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
174.0
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
172.0
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
171.2
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
171.1
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
171.0
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
168.6
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
167.4
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
166.0
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
163.1
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
162.2
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
159.8
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
159.0
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
158.4
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
156.8
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
156.1
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
155.0
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
154.1
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
152.5
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
152.1
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
151.5
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
150.4
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
146.9
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
145.7
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
145.7
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
145.3
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
144.7
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
143.5
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
143.3
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
139.4
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
136.1
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
134.1
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
134.0
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
132.5
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
132.4
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
131.2
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
130.4
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
128.8
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
128.7
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
128.3
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
128.0
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
126.9
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
123.9
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
123.5
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
122.5
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
122.2
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
121.7
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
121.2
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
118.6
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
118.1
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
117.6
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
115.1
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
113.2
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
111.5
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
111.4
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
108.2
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
104.1
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
103.9
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
103.7
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
103.0
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
102.6
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
101.2
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
101.2
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
98.4
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
97.9
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
97.7
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
96.6
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
95.8
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
95.1
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
94.9
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
93.7
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
90.5
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
90.4
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
90.1
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
88.2
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
87.5
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
87.1
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
86.9
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
84.4
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
82.7
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
82.4
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
80.2
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
80.1
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
79.6
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
79.5
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
78.3
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
77.2
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
76.2
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
75.7
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
75.5
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
74.7
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
73.8
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
71.1
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
70.2
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
64.5
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
63.9
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
57.9
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
55.0
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
52.0
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
50.2
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
48.3
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
48.1
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
48.1
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
47.9
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
47.6
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
47.6
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
47.2
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
46.5
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
46.1
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
45.9
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
45.3
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
40.0
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
39.2
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
39.2
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
36.5
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
35.6
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
31.2
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
30.9
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
30.6
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
30.3
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
28.6
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
27.6
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
27.4
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
27.4
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
20.1
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
19.9
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
17.6
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
16.7
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
15.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
15.3
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
13.7
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
13.2
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
10.1
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
7.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
6.1
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
5.1
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
5.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
4.5
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
3.8
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
3.6
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
3.3
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
1.3
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
1.1
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
0.7
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
0.5
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
0.5
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SULT2A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
308.8
Number of samples
231
Samples
Sample
Description
TPM
DO45131
53 years, male, NA, stage:4, dead, 360 days
1885.3
DO50818
65 years, male, NA, stage:2, alive, 510 days
1577.9
DO45171
56 years, male, NA, stage:3, alive, 600 days
1294.8
DO45105
61 years, male, NA, stage:1, alive, 1680 days
1169.6
DO45129
61 years, male, NA, stage:3, alive, 1470 days
1115.8
DO23534
60 years, male, NA, stage:2, alive, 840 days
1059.5
DO48751
68 years, male, NA, stage:2, dead, 480 days
1048.5
DO48757
68 years, female, NA, stage:3, alive, 480 days
1042.2
DO45175
74 years, male, NA, stage:2, alive, 1140 days
1035.5
DO48741
64 years, male, NA, stage:3, alive, 240 days
971.5
DO23516
69 years, male, NA, stage:3, dead, 20 days
901.5
DO48704
68 years, female, NA, stage:3, alive, 750 days
851.7
DO45195
62 years, male, NA, stage:1, alive, 390 days
839.9
DO50787
63 years, male, NA, stage:3, alive, 480 days
831.1
DO48746
76 years, male, NA, stage:3, alive, 570 days
821.8
DO50817
75 years, male, NA, stage:2, alive, 390 days
792.8
DO50783
62 years, male, NA, stage:3, alive, 480 days
783.8
DO23512
60 years, male, NA, stage:1, alive, 1260 days
775.7
DO227643
79 years, male, NA, stage:2, alive, 1260 days
736.6
DO23531
78 years, female, NA, stage:3, alive, 900 days
726.5
DO50802
49 years, male, NA, stage:2, alive, 930 days
711.3
DO45099
46 years, male, NA, stage:3, alive, 1590 days
700.4
DO48672
81 years, male, NA, stage:2, alive, 450 days
693.7
DO48695
77 years, male, NA, stage:2, alive, 720 days
678.8
DO50789
73 years, female, NA, stage:2, alive, 570 days
655.3
DO45197
51 years, male, NA, stage:2, alive, 1170 days
653.2
DO48721
58 years, female, NA, stage:1, alive, 900 days
650.3
DO48716
71 years, male, NA, stage:2, alive, 720 days
639.0
DO23536
56 years, male, NA, stage:2, alive, 930 days
638.6
DO50859
77 years, male, NA, stage:2, alive, 180 days
636.3
DO45223
67 years, male, NA, stage:4, alive, 1020 days
630.2
DO48760
70 years, female, NA, stage:2, alive, 690 days
624.4
DO23550
69 years, male, NA, stage:1, alive, 990 days
615.7
DO45215
65 years, male, NA, stage:2, alive, 1170 days
606.4
DO45181
84 years, female, NA, stage:2, alive, 1200 days
600.3
DO45255
81 years, male, NA, stage:3, alive, 720 days
595.7
DO45153
77 years, female, NA, stage:2, alive, 1380 days
592.5
DO45117
73 years, female, NA, stage:2, dead, 1110 days
590.1
DO23527
72 years, male, NA, stage:1, alive, 1050 days
582.7
DO23508
79 years, female, NA, stage:2, alive, 390 days
578.4
DO50798
77 years, male, NA, stage:3, dead, 30 days
577.9
DO45107
63 years, female, NA, stage:2, alive, 1710 days
576.5
DO45149
70 years, female, NA, stage:2, alive, 1260 days
567.6
DO23532
71 years, female, NA, stage:1, alive, 960 days
556.4
DO23511
83 years, female, NA, stage:3, dead, 180 days
547.8
DO45281
83 years, male, NA, stage:4, alive, 750 days
545.1
DO50857
72 years, male, NA, stage:2, alive, 210 days
537.8
DO50774
68 years, female, NA, stage:2, alive, 720 days
525.7
DO45163
76 years, male, NA, stage:2, alive, 960 days
525.1
DO45179
78 years, female, NA, stage:2, alive, 600 days
520.0
DO45111
74 years, male, NA, stage:2, alive, 1590 days
515.0
DO50825
70 years, male, NA, stage:2, alive, 390 days
513.8
DO50776
75 years, male, NA, stage:1, alive, 690 days
509.1
DO23513
76 years, male, NA, stage:3, alive, 1200 days
504.5
DO48700
78 years, female, NA, stage:2, alive, 810 days
502.3
DO45119
74 years, male, NA, stage:3, dead, 510 days
474.4
DO45094
76 years, male, NA, stage:3, alive, 1650 days
459.8
DO23514
64 years, male, NA, stage:2, alive, 1290 days
458.9
DO45092
62 years, male, NA, stage:4, dead, 1200 days
449.8
DO23539
77 years, male, NA, stage:1, alive, 1110 days
447.0
DO23509
60 years, male, NA, stage:3, dead, 780 days
439.8
DO45101
63 years, male, NA, stage:2, alive, 1680 days
429.0
DO50813
56 years, male, NA, stage:2, alive, 420 days
425.1
DO45096
69 years, male, NA, stage:2, dead, 1290 days
421.0
DO50822
66 years, male, NA, stage:2, alive, 510 days
414.6
DO23529
72 years, male, NA, stage:4, alive, 930 days
407.9
DO45201
49 years, male, NA, stage:1, alive, 900 days
405.5
DO45097
69 years, male, NA, stage:3, alive, 1620 days
397.7
DO23528
45 years, female, NA, stage:2, alive, 1020 days
397.5
DO45113
58 years, male, NA, stage:3, alive, 1560 days
392.8
DO45143
69 years, male, NA, stage:3, alive, 1290 days
390.0
DO45177
81 years, female, NA, stage:3, alive, 1260 days
389.0
DO48742
76 years, male, NA, stage:2, alive, 600 days
385.3
DO48677
58 years, male, NA, stage:3, alive, 1140 days
371.7
DO45199
86 years, female, NA, stage:2, alive, 1350 days
369.7
DO48701
78 years, male, NA, stage:2, alive, 780 days
368.8
DO45167
67 years, male, NA, stage:2, dead, 1440 days
361.0
DO23548
78 years, female, NA, stage:1, alive, 840 days
358.0
DO227801
77 years, female, NA, stage:1, alive, 660 days
357.6
DO50840
49 years, male, NA, stage:2, alive, 330 days
344.5
DO48674
80 years, male, NA, stage:2, alive, 1260 days
336.7
DO50804
81 years, male, NA, stage:2, alive, 720 days
331.8
DO45233
83 years, male, NA, stage:3, alive, 900 days
330.9
DO50793
76 years, male, NA, stage:4, alive, 540 days
327.4
DO45155
69 years, male, NA, stage:2, alive, 2160 days
323.8
DO50809
56 years, male, NA, stage:3, dead, 720 days
322.5
DO45261
74 years, male, NA, stage:3, alive, 990 days
321.8
DO23545
67 years, male, NA, stage:2, dead, 570 days
314.4
DO45221
75 years, female, NA, stage:4, dead, 390 days
311.9
DO50803
62 years, female, NA, stage:1, alive, 540 days
306.5
DO50816
63 years, male, NA, stage:2, alive, 390 days
306.1
DO45125
58 years, male, NA, stage:3, alive, 1680 days
300.6
DO50811
62 years, male, NA, stage:1, alive, 450 days
297.7
DO45227
57 years, female, NA, stage:2, alive, 1020 days
294.2
DO48719
80 years, male, NA, stage:2, alive, 690 days
290.9
DO50814
83 years, male, NA, stage:3, alive, 420 days
287.3
DO45121
61 years, male, NA, stage:3, alive, 1530 days
287.1
DO23543
63 years, male, NA, stage:2, alive, 1020 days
283.7
DO45187
32 years, female, NA, stage:1, alive, 1260 days
275.1
DO23533
61 years, male, NA, stage:2, alive, 900 days
274.9
DO23538
67 years, male, NA, stage:2, alive, 450 days
271.5
DO23541
65 years, male, NA, stage:2, alive, 930 days
271.3
DO45157
62 years, male, NA, stage:2, alive, 1980 days
269.2
DO45173
63 years, male, NA, stage:3, alive, 1170 days
265.2
DO50820
77 years, female, NA, stage:3, alive, 510 days
265.0
DO23542
66 years, male, NA, stage:3, alive, 960 days
260.4
DO23518
67 years, male, NA, stage:2, alive, 1320 days
258.5
DO23546
63 years, male, NA, stage:2, alive, 1050 days
258.5
DO45115
81 years, male, NA, stage:2, alive, 840 days
255.1
DO50832
73 years, male, NA, stage:3, alive, 90 days
253.5
DO50799
66 years, female, NA, stage:2, alive, 540 days
242.8
DO45135
77 years, male, NA, stage:1, alive, 1410 days
236.5
DO50807
67 years, male, NA, stage:1, alive, 540 days
231.9
DO23544
67 years, male, NA, stage:2, alive, 960 days
231.6
DO23551
73 years, male, NA, stage:3, dead, 150 days
227.5
DO48736
76 years, female, NA, stage:1, alive, 600 days
224.7
DO48681
57 years, male, NA, stage:2, alive, 900 days
223.2
DO48725
66 years, male, NA, stage:1, alive, 780 days
220.8
DO48723
73 years, male, NA, stage:1, alive, 600 days
219.0
DO45235
68 years, female, NA, stage:1, alive, 900 days
218.4
DO48715
58 years, female, NA, stage:2, dead, 690 days
214.9
DO50808
68 years, male, NA, stage:2, alive, 570 days
211.9
DO45253
50 years, male, NA, stage:2, alive, 870 days
208.9
DO23552
80 years, female, NA, stage:1, alive, 810 days
207.7
DO45207
68 years, male, NA, stage:1, alive, 1050 days
207.4
DO45123
78 years, female, NA, stage:2, dead, 570 days
206.7
DO45225
69 years, male, NA, stage:1, alive, 1050 days
205.8
DO45091
56 years, male, NA, stage:2, dead, 1320 days
203.0
DO45247
31 years, female, NA, stage:2, alive, 210 days
202.8
DO45241
49 years, male, NA, stage:1, alive, 1080 days
200.8
DO50839
47 years, female, NA, stage:3, alive, 330 days
195.8
DO45191
61 years, female, NA, stage:2, alive, 1200 days
191.0
DO23535
67 years, male, NA, stage:1, alive, 960 days
188.3
DO50791
79 years, female, NA, stage:1, dead, 480 days
183.1
DO45141
73 years, male, NA, stage:2, alive, 1320 days
180.6
DO50800
74 years, male, NA, stage:2, alive, 510 days
175.6
DO45237
58 years, male, NA, stage:2, alive, 900 days
175.2
DO23547
74 years, male, NA, stage:1, alive, 1020 days
173.2
DO48759
73 years, male, NA, stage:3, alive, 720 days
172.1
DO45095
66 years, male, NA, stage:2, alive, 1620 days
171.5
DO48733
72 years, male, NA, stage:2, alive, 600 days
168.0
DO23510
80 years, female, NA, stage:2, alive, 870 days
167.7
DO45217
69 years, female, NA, stage:3, dead, 270 days
167.0
DO23540
73 years, male, NA, stage:1, alive, 750 days
162.9
DO45229
74 years, male, NA, stage:1, alive, 990 days
160.4
DO48717
54 years, male, NA, stage:4, dead, 180 days
158.1
DO23524
71 years, female, NA, stage:2, alive, 1050 days
153.6
DO45139
63 years, male, NA, stage:3, alive, 1320 days
152.5
DO23517
62 years, male, NA, stage:2, alive, 1200 days
151.2
DO50819
72 years, female, NA, stage:2, alive, 510 days
150.9
DO50785
37 years, male, NA, stage:4, dead, 90 days
146.2
DO45165
75 years, male, NA, stage:2, alive, 690 days
138.0
DO23525
71 years, male, NA, stage:4, alive, 1050 days
132.6
DO45231
84 years, male, NA, stage:2, alive, 930 days
131.2
DO48761
55 years, male, NA, stage:2, alive, 870 days
128.8
DO50805
72 years, male, NA, stage:2, alive, 690 days
128.7
DO50850
74 years, male, NA, stage:3, alive, 720 days
120.8
DO45133
64 years, male, NA, stage:3, dead, 660 days
120.4
DO23549
74 years, male, NA, stage:3, alive, 990 days
117.9
DO50845
72 years, male, NA, stage:3, alive, 210 days
117.4
DO48712
50 years, male, NA, stage:2, alive, 810 days
112.3
DO45193
68 years, female, NA, stage:4, dead, 120 days
107.5
DO48679
72 years, male, NA, stage:2, alive, 1200 days
105.5
DO45263
67 years, male, NA, stage:3, dead, 270 days
100.9
DO45257
46 years, male, NA, stage:3, alive, 810 days
96.3
DO45203
71 years, female, NA, stage:2, alive, 1170 days
94.9
DO45239
42 years, male, NA, stage:2, alive, 870 days
92.9
DO45183
72 years, female, NA, stage:2, dead, 570 days
88.4
DO48737
52 years, male, NA, stage:1, alive, 720 days
85.6
DO45103
47 years, male, NA, stage:3, alive, 450 days
85.5
DO45219
78 years, male, NA, stage:2, alive, 1080 days
81.4
DO45267
73 years, male, NA, stage:3, dead, 570 days
79.1
DO45109
63 years, male, NA, stage:2, alive, 1590 days
77.6
DO45137
38 years, male, NA, stage:1, alive, 1320 days
75.9
DO48693
71 years, male, NA, stage:2, alive, 900 days
71.8
DO45243
74 years, female, NA, stage:3, alive, 930 days
70.6
DO48743
69 years, female, NA, stage:2, alive, 570 days
66.4
DO23521
63 years, male, NA, stage:3, alive, 1110 days
66.2
DO23530
53 years, male, NA, stage:4, dead, 180 days
65.0
DO48730
73 years, female, NA, stage:2, alive, 630 days
61.0
DO45161
74 years, male, NA, stage:2, dead, 540 days
59.6
DO45273
62 years, male, NA, stage:2, alive, 480 days
54.3
DO45213
58 years, male, NA, stage:1, alive, 1200 days
54.1
DO48747
62 years, male, NA, stage:3, alive, 540 days
53.9
DO23526
66 years, male, NA, stage:3, alive, 1050 days
50.4
DO50829
78 years, male, NA, stage:3, alive, 570 days
40.8
DO48728
74 years, female, NA, stage:2, alive, 150 days
36.7
DO45159
65 years, male, NA, stage:3, alive, 1470 days
34.7
DO48697
64 years, female, NA, stage:2, dead, 810 days
34.4
DO48732
73 years, male, NA, stage:3, alive, 630 days
34.1
DO45265
73 years, male, NA, stage:3, alive, 1020 days
33.3
DO45127
73 years, male, NA, stage:3, dead, 420 days
31.2
DO50806
70 years, male, NA, stage:4, alive, 540 days
31.0
DO45251
57 years, female, NA, stage:2, alive, 900 days
29.6
DO23537
79 years, male, NA, stage:2, dead, 900 days
28.0
DO45093
71 years, male, NA, stage:2, dead, 720 days
25.9
DO23515
71 years, male, NA, stage:2, alive, 1230 days
24.7
DO45249
57 years, male, NA, stage:1, alive, 630 days
20.4
DO48720
62 years, female, NA, stage:2, alive, 570 days
20.1
DO45301
56 years, male, NA, stage:2, dead, 1440 days
16.0
DO45287
74 years, male, NA, stage:1, alive, 390 days
13.8
DO50844
75 years, male, NA, stage:4, alive, 300 days
13.5
DO45205
67 years, female, NA, stage:2, dead, 90 days
10.1
DO45275
65 years, male, NA, stage:3, dead, 10 days
9.7
DO48706
72 years, male, NA, stage:2, alive, 870 days
7.8
DO50815
62 years, male, NA, stage:3, alive, 150 days
7.4
DO48727
81 years, female, NA, stage:2, dead, 390 days
5.1
DO45269
59 years, male, NA, stage:3, alive, 750 days
4.7
DO45305
66 years, male, NA, stage:4, alive, 300 days
4.2
DO45185
89 years, male, NA, stage:2, alive, 600 days
4.1
DO45169
74 years, male, NA, stage:3, alive, 1350 days
3.3
DO23519
65 years, male, NA, stage:3, alive, 630 days
2.5
DO50778
60 years, male, NA, stage:4, alive, 630 days
2.1
DO45145
78 years, male, NA, stage:3, dead, 60 days
1.5
DO45283
60 years, male, NA, stage:3, alive, 510 days
1.3
DO45189
85 years, female, NA, stage:2, alive, 1200 days
1.0
DO45245
75 years, female, NA, stage:2, dead, 240 days
0.6
DO45277
64 years, male, NA, stage:3, alive, 600 days
0.6
DO45279
67 years, male, NA, stage:3, alive, 1290 days
0.6
DO23523
52 years, male, NA, stage:3, alive, 1080 days
0.6
DO45259
65 years, male, NA, stage:3, alive, 330 days
0.5
DO45297
61 years, female, NA, stage:4, dead, 1260 days
0.4
DO45289
78 years, female, NA, stage:3, alive, 360 days
0.3
DO50855
47 years, male, NA, stage:2, alive, 570 days
0.3
DO45303
62 years, female, NA, stage:3, alive, 990 days
0.2
DO45211
76 years, male, NA, stage:3, alive, 240 days
0.2
DO45285
59 years, male, NA, stage:3, alive, 480 days
0.2
DO48682
72 years, female, NA, stage:3, dead, 120 days
0.2
DO45299
70 years, female, NA, stage:1, alive, 1440 days
0.2
DO45307
54 years, female, NA, stage:4, dead, 240 days
0.1
DO45209
70 years, male, NA, stage:4, alive, 1350 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.4
1027
Tumor
1.2
922
Normal
1.0
452
Normal
1.0
435
Tumor
1.0
448
Normal
0.9
466
Normal
0.9
745
Tumor
0.9
944
Normal
0.9
851
Tumor
0.9
171
Tumor
0.9
616
Normal
0.9
494
Normal
0.8
915
Tumor
0.8
546
Normal
0.8
368
Normal
0.8
864
Normal
0.8
636
Normal
0.8
341
Tumor
0.7
982
Normal
0.7
286
Normal
0.7
124
Normal
0.7
358
Normal
0.7
618
Normal
0.7
128
Normal
0.7
228
Normal
0.7
698
Normal
0.7
686
Normal
0.7
446
Normal
0.7
696
Normal
0.7
376
Normal
0.7
964
Normal
0.7
568
Normal
0.7
914
Normal
0.7
332
Normal
0.7
918
Normal
0.7
516
Normal
0.7
462
Normal
0.6
186
Normal
0.6
716
Normal
0.6
172
Normal
0.6
222
Normal
0.6
514
Normal
0.6
756
Normal
0.6
392
Normal
0.6
354
Normal
0.6
1016
Normal
0.6
558
Normal
0.6
966
Normal
0.6
414
Normal
0.6
852
Normal
0.6
824
Normal
0.6
723
Tumor
0.6
126
Normal
0.6
722
Normal
0.6
868
Normal
0.6
862
Normal
0.6
468
Normal
0.5
258
Normal
0.5
412
Normal
0.5
212
Normal
0.5
272
Normal
0.5
1028
Normal
0.5
123
Tumor
0.5
976
Normal
0.5
356
Normal
0.5
362
Normal
0.5
394
Normal
0.5
662
Normal
0.5
564
Normal
0.5
746
Normal
0.5
232
Normal
0.5
816
Normal
0.5
231
Tumor
0.5
628
Normal
0.5
858
Normal
0.5
714
Normal
0.5
916
Normal
0.5
981
Tumor
0.5
1044
Normal
0.5
422
Normal
0.5
284
Normal
0.5
257
Tumor
0.5
978
Normal
0.5
866
Normal
0.5
416
Normal
0.4
567
Tumor
0.4
528
Normal
0.4
924
Normal
0.4
426
Normal
0.4
958
Normal
0.4
484
Normal
0.4
1022
Normal
0.4
984
Normal
0.4
298
Normal
0.4
352
Normal
0.4
1042
Normal
0.4
162
Normal
0.4
1026
Normal
0.4
666
Normal
0.4
642
Normal
0.4
432
Normal
0.4
912
Normal
0.4
488
Normal
0.4
138
Normal
0.4
436
Normal
0.4
956
Normal
0.4
926
Normal
0.4
474
Normal
0.4
1032
Normal
0.3
314
Normal
0.3
112
Tumor
0.3
111
Normal
0.3
262
Normal
0.3
786
Normal
0.3
388
Normal
0.3
434
Normal
0.3
342
Normal
0.3
1046
Normal
0.3
867
Tumor
0.3
738
Normal
0.3
954
Normal
0.3
742
Normal
0.3
396
Normal
0.3
534
Normal
0.3
968
Normal
0.3
554
Normal
0.3
574
Normal
0.3
386
Normal
0.3
328
Normal
0.3
1014
Normal
0.3
218
Normal
0.3
648
Normal
0.3
518
Normal
0.3
132
Normal
0.3
393
Tumor
0.3
938
Normal
0.3
366
Normal
0.3
952
Normal
0.2
526
Normal
0.2
664
Normal
0.2
882
Normal
0.2
344
Normal
0.2
755
Tumor
0.2
142
Normal
0.2
214
Normal
0.2
456
Normal
0.2
114
Normal
0.2
278
Normal
0.2
127
Tumor
0.2
224
Normal
0.2
538
Normal
0.1
818
Normal
0.1
492
Normal
0.1
884
Normal
0.1
146
Normal
0.1
196
Normal
0.1
472
Normal
0.1
327
Tumor
0.1
353
Tumor
0.1
911
Tumor
0.1
312
Normal
0.0
148
Normal
0.0
481
Tumor
0.0
433
Tumor
0.0
953
Tumor
0.0
464
Normal
0.0
672
Normal
0.0
744
Normal
0.0
977
Tumor
0.0
424
Normal
0.0
136
Normal
0.0
955
Tumor
0.0
1045
Tumor
0.0
268
Normal
0.0
572
Normal
0.0
778
Normal
-0.1
482
Normal
-0.1
557
Tumor
-0.1
364
Normal
-0.1
524
Normal
-0.1
363
Tumor
-0.1
461
Tumor
-0.1
451
Tumor
-0.2
141
Tumor
-0.2
125
Tumor
-0.2
188
Normal
-0.2
444
Normal
-0.2
1015
Tumor
-0.2
428
Normal
-0.2
685
Tumor
-0.2
863
Tumor
-0.2
145
Tumor
-0.2
715
Tumor
-0.2
161
Tumor
-0.3
195
Tumor
-0.3
465
Tumor
-0.3
113
Tumor
-0.3
313
Tumor
-0.3
957
Tumor
-0.3
728
Normal
-0.3
663
Tumor
-0.3
513
Tumor
-0.3
857
Tumor
-0.3
878
Normal
-0.3
536
Normal
-0.3
192
Normal
-0.3
384
Normal
-0.3
423
Tumor
-0.4
665
Tumor
-0.4
921
Tumor
-0.4
913
Tumor
-0.4
267
Tumor
-0.4
217
Tumor
-0.4
873
Tumor
-0.4
261
Tumor
-0.4
627
Tumor
-0.4
537
Tumor
-0.4
365
Tumor
-0.4
963
Tumor
-0.4
727
Tumor
-0.4
478
Normal
-0.4
777
Tumor
-0.5
415
Tumor
-0.5
641
Tumor
-0.5
1041
Tumor
-0.5
515
Tumor
-0.5
277
Tumor
-0.5
861
Tumor
-0.6
647
Tumor
-0.6
473
Tumor
-0.6
1013
Tumor
-0.6
553
Tumor
-0.6
874
Normal
-0.6
498
Normal
-0.6
721
Tumor
-0.6
357
Tumor
-0.6
411
Tumor
-0.6
421
Tumor
-0.6
187
Tumor
-0.7
1043
Tumor
-0.7
185
Tumor
-0.7
391
Tumor
-0.7
447
Tumor
-0.7
483
Tumor
-0.8
814
Normal
-0.8
431
Tumor
-0.8
493
Tumor
-0.8
221
Tumor
-0.8
1021
Tumor
-0.8
213
Tumor
-0.9
741
Tumor
-0.9
525
Tumor
-0.9
615
Tumor
-0.9
617
Tumor
-0.9
635
Tumor
-0.9
737
Tumor
-0.9
563
Tumor
-0.9
975
Tumor
-0.9
445
Tumor
-0.9
823
Tumor
-0.9
491
Tumor
-0.9
191
Tumor
-0.9
361
Tumor
-0.9
724
Normal
-1.0
463
Tumor
-1.0
943
Tumor
-1.0
865
Tumor
-1.0
375
Tumor
-1.0
881
Tumor
-1.0
883
Tumor
-1.1
1031
Tumor
-1.1
965
Tumor
-1.1
785
Tumor
-1.1
271
Tumor
-1.1
467
Tumor
-1.2
137
Tumor
-1.2
227
Tumor
-1.2
917
Tumor
-1.3
413
Tumor
-1.3
813
Tumor
-1.3
533
Tumor
-1.3
517
Tumor
-1.3
817
Tumor
-1.3
487
Tumor
-1.3
355
Tumor
-1.4
425
Tumor
-1.4
297
Tumor
-1.4
477
Tumor
-1.4
571
Tumor
-1.5
427
Tumor
-1.5
695
Tumor
-1.6
523
Tumor
-1.6
937
Tumor
-1.6
697
Tumor
-1.7
283
Tumor
-1.7
383
Tumor
-1.7
343
Tumor
-1.8
471
Tumor
-1.8
923
Tumor
-1.8
395
Tumor
-1.8
951
Tumor
-1.9
331
Tumor
-1.9
223
Tumor
-1.9
1025
Tumor
-1.9
573
Tumor
-2.0
671
Tumor
-2.0
877
Tumor
-2.0
443
Tumor
-2.0
311
Tumor
-2.0
713
Tumor
-2.0
387
Tumor
-2.1
455
Tumor
-2.1
967
Tumor
-2.1
135
Tumor
-2.1
983
Tumor
-2.1
527
Tumor
-2.2
367
Tumor
-2.2
925
Tumor
-2.2
815
Tumor
-2.3
351
Tumor
-2.3
545
Tumor
-2.4
285
Tumor
-2.5
211
Tumor
-2.5
385
Tumor
-2.6
661
Tumor
-2.6
497
Tumor
-2.6
131
Tumor
-2.8
535
Tumor
-2.9
743
Tumor
-3.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
