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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TYK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
84.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
77.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
72.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
70.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
66.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
66.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
65.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
65.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
64.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
63.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
60.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
60.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
59.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
58.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
57.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
56.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
55.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
54.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
53.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
53.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
53.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
52.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
52.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
51.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
51.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
49.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
49.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
46.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
46.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
45.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
44.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
43.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
42.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
41.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
39.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
39.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
38.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
37.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
36.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
36.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
35.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
31.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
28.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
28.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TYK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
54.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
50.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
47.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
46.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
45.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
41.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
0.9
813
Tumor
0.7
277
Tumor
0.7
967
Tumor
0.7
737
Tumor
0.7
365
Tumor
0.6
463
Tumor
0.6
267
Tumor
0.5
221
Tumor
0.5
192
Normal
0.5
615
Tumor
0.5
915
Tumor
0.5
515
Tumor
0.5
977
Tumor
0.5
627
Tumor
0.5
865
Tumor
0.5
445
Tumor
0.5
937
Tumor
0.5
223
Tumor
0.5
641
Tumor
0.4
642
Normal
0.4
271
Tumor
0.4
814
Normal
0.4
195
Tumor
0.4
262
Normal
0.4
823
Tumor
0.4
363
Tumor
0.4
913
Tumor
0.4
465
Tumor
0.4
487
Tumor
0.4
1041
Tumor
0.4
926
Normal
0.4
916
Normal
0.4
217
Tumor
0.4
523
Tumor
0.4
648
Normal
0.4
268
Normal
0.4
572
Normal
0.4
258
Normal
0.4
357
Tumor
0.3
616
Normal
0.3
411
Tumor
0.3
211
Tumor
0.3
222
Normal
0.3
636
Normal
0.3
358
Normal
0.3
558
Normal
0.3
141
Tumor
0.3
312
Normal
0.3
628
Normal
0.3
918
Normal
0.3
921
Tumor
0.3
664
Normal
0.3
187
Tumor
0.3
564
Normal
0.3
1031
Tumor
0.3
171
Tumor
0.3
473
Tumor
0.3
851
Tumor
0.3
214
Normal
0.3
196
Normal
0.3
188
Normal
0.3
955
Tumor
0.3
527
Tumor
0.2
172
Normal
0.2
983
Tumor
0.2
618
Normal
0.2
162
Normal
0.2
1025
Tumor
0.2
436
Normal
0.2
526
Normal
0.2
557
Tumor
0.2
536
Normal
0.2
884
Normal
0.2
131
Tumor
0.2
272
Normal
0.2
563
Tumor
0.2
867
Tumor
0.2
455
Tumor
0.2
123
Tumor
0.2
917
Tumor
0.2
861
Tumor
0.2
434
Normal
0.2
342
Normal
0.2
924
Normal
0.2
344
Normal
0.2
685
Tumor
0.2
328
Normal
0.2
881
Tumor
0.2
431
Tumor
0.2
728
Normal
0.2
148
Normal
0.2
392
Normal
0.2
137
Tumor
0.2
186
Normal
0.2
343
Tumor
0.2
538
Normal
0.2
722
Normal
0.2
1016
Normal
0.2
142
Normal
0.2
396
Normal
0.2
362
Normal
0.2
713
Tumor
0.2
393
Tumor
0.2
368
Normal
0.1
132
Normal
0.1
574
Normal
0.1
943
Tumor
0.1
443
Tumor
0.1
444
Normal
0.1
514
Normal
0.1
914
Normal
0.1
484
Normal
0.1
975
Tumor
0.1
824
Normal
0.1
528
Normal
0.1
124
Normal
0.1
944
Normal
0.1
147
Tumor
0.1
863
Tumor
0.1
218
Normal
0.1
498
Normal
0.1
956
Normal
0.1
452
Normal
0.1
191
Tumor
0.1
366
Normal
0.1
1046
Normal
0.1
1028
Normal
0.1
954
Normal
0.1
696
Normal
0.1
878
Normal
0.1
1044
Normal
0.1
111
Normal
0.1
721
Tumor
0.1
964
Normal
0.1
874
Normal
0.1
786
Normal
0.1
755
Tumor
0.1
413
Tumor
0.1
494
Normal
0.1
471
Tumor
0.1
818
Normal
0.1
922
Normal
0.1
866
Normal
0.1
232
Normal
0.1
742
Normal
0.1
756
Normal
0.1
461
Tumor
0.1
852
Normal
0.1
311
Tumor
0.1
882
Normal
0.1
1015
Tumor
0.1
227
Tumor
0.1
952
Normal
0.1
433
Tumor
0.1
462
Normal
0.1
568
Normal
0.1
686
Normal
0.1
912
Normal
0.1
976
Normal
0.1
727
Tumor
0.1
224
Normal
0.1
352
Normal
0.1
341
Tumor
0.1
968
Normal
0.1
286
Normal
0.1
978
Normal
0.1
492
Normal
0.1
815
Tumor
0.1
456
Normal
0.1
364
Normal
0.1
714
Normal
0.1
554
Normal
0.1
938
Normal
0.1
384
Normal
0.1
468
Normal
0.1
136
Normal
0.1
545
Tumor
0.1
135
Tumor
0.1
746
Normal
0.1
395
Tumor
0.1
451
Tumor
0.1
738
Normal
0.1
534
Normal
0.1
857
Tumor
0.1
868
Normal
0.1
1026
Normal
0.1
447
Tumor
0.1
355
Tumor
0.1
414
Normal
0.1
213
Tumor
0.1
518
Normal
0.1
114
Normal
0.1
474
Normal
0.1
571
Tumor
0.1
923
Tumor
0.1
376
Normal
0.1
353
Tumor
0.1
422
Normal
0.1
858
Normal
0.1
138
Normal
0.1
478
Normal
0.1
862
Normal
0.1
488
Normal
0.1
513
Tumor
0.1
1042
Normal
0.1
472
Normal
0.1
958
Normal
0.1
816
Normal
0.1
231
Tumor
0.1
446
Normal
0.0
278
Normal
0.0
1014
Normal
0.0
228
Normal
0.0
617
Tumor
0.0
423
Tumor
0.0
493
Tumor
0.0
356
Normal
0.0
386
Normal
0.0
464
Normal
0.0
666
Normal
0.0
546
Normal
0.0
716
Normal
0.0
416
Normal
0.0
524
Normal
0.0
126
Normal
0.0
966
Normal
0.0
428
Normal
0.0
744
Normal
0.0
873
Tumor
0.0
112
Tumor
0.0
354
Normal
0.0
467
Tumor
0.0
982
Normal
0.0
481
Tumor
0.0
412
Normal
0.0
672
Normal
0.0
698
Normal
0.0
394
Normal
0.0
432
Normal
0.0
533
Tumor
0.0
1045
Tumor
0.0
482
Normal
0.0
212
Normal
0.0
448
Normal
0.0
146
Normal
0.0
314
Normal
0.0
1022
Normal
0.0
424
Normal
0.0
185
Tumor
0.0
1043
Tumor
0.0
261
Tumor
0.0
297
Tumor
0.0
466
Normal
0.0
864
Normal
0.0
984
Normal
0.0
298
Normal
0.0
553
Tumor
0.0
963
Tumor
0.0
128
Normal
0.0
332
Normal
0.0
695
Tumor
0.0
375
Tumor
0.0
911
Tumor
0.0
981
Tumor
0.0
785
Tumor
0.0
125
Tumor
0.0
778
Normal
0.0
284
Normal
0.0
723
Tumor
0.0
145
Tumor
0.0
113
Tumor
0.0
883
Tumor
0.0
647
Tumor
-0.1
573
Tumor
-0.1
567
Tumor
-0.1
361
Tumor
-0.1
516
Normal
-0.1
483
Tumor
-0.1
391
Tumor
-0.1
127
Tumor
-0.1
663
Tumor
-0.1
435
Tumor
-0.1
715
Tumor
-0.1
383
Tumor
-0.1
421
Tumor
-0.1
388
Normal
-0.1
662
Normal
-0.1
777
Tumor
-0.1
477
Tumor
-0.1
331
Tumor
-0.1
161
Tumor
-0.1
697
Tumor
-0.1
283
Tumor
-0.1
1013
Tumor
-0.1
427
Tumor
-0.1
426
Normal
-0.1
385
Tumor
-0.2
1032
Normal
-0.2
327
Tumor
-0.2
497
Tumor
-0.2
415
Tumor
-0.2
743
Tumor
-0.2
257
Tumor
-0.2
1021
Tumor
-0.2
635
Tumor
-0.2
877
Tumor
-0.2
953
Tumor
-0.2
491
Tumor
-0.2
724
Normal
-0.2
745
Tumor
-0.2
671
Tumor
-0.3
741
Tumor
-0.3
387
Tumor
-0.3
525
Tumor
-0.3
425
Tumor
-0.3
537
Tumor
-0.3
925
Tumor
-0.3
817
Tumor
-0.3
951
Tumor
-0.3
313
Tumor
-0.4
535
Tumor
-0.4
517
Tumor
-0.4
1027
Tumor
-0.4
367
Tumor
-0.4
351
Tumor
-0.4
965
Tumor
-0.5
661
Tumor
-0.5
665
Tumor
-0.5
957
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
