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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETFB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
547.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3224.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2076.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1964.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1904.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1856.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1633.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1529.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1375.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1370.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1319.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1302.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1292.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1236.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1188.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1179.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1151.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1128.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1124.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1118.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1118.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1111.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1083.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1082.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1081.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1057.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1056.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1049.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1043.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1041.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1028.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1026.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1019.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1018.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1012.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1008.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
999.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
998.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
964.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
952.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
941.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
923.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
906.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
906.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
883.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
869.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
861.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
860.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
857.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
844.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
823.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
799.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
790.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
785.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
782.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
777.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
771.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
767.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
762.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
760.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
758.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
755.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
745.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
743.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
740.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
735.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
731.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
729.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
729.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
726.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
723.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
719.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
715.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
705.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
700.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
699.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
698.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
694.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
694.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
694.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
691.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
686.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
685.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
681.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
679.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
674.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
669.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
666.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
660.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
658.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
652.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
650.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
645.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
638.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
636.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
635.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
634.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
629.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
622.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
620.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
617.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
617.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
616.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
615.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
614.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
609.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
608.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
607.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
607.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
607.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
604.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
603.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
602.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
596.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
594.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
594.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
593.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
592.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
591.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
588.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
586.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
585.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
582.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
577.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
575.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
574.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
573.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
572.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
569.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
566.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
565.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
565.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
561.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
561.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
561.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
560.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
560.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
557.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
555.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
552.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
551.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
543.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
543.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
540.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
539.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
535.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
535.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
534.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
533.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
531.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
529.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
528.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
528.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
527.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
526.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
524.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
523.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
522.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
522.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
520.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
514.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
510.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
509.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
508.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
508.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
504.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
504.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
502.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
500.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
499.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
497.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
496.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
493.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
492.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
490.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
486.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
479.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
478.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
475.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
472.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
471.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
470.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
470.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
470.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
469.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
468.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
467.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
467.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
459.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
458.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
458.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
457.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
456.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
454.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
454.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
451.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
448.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
447.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
446.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
446.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
445.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
443.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
441.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
439.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
439.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
438.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
435.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
432.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
430.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
429.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
428.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
426.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
425.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
423.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
421.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
420.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
419.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
418.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
417.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
417.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
416.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
415.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
414.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
412.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
412.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
412.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
410.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
408.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
406.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
405.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
405.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
405.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
400.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
399.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
398.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
397.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
397.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
394.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
393.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
389.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
389.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
388.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
385.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
385.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
379.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
375.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
375.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
374.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
373.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
372.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
372.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
371.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
369.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
368.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
368.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
366.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
366.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
365.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
364.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
360.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
360.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
357.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
354.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
352.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
350.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
348.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
347.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
343.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
339.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
338.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
337.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
337.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
337.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
335.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
335.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
333.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
332.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
330.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
329.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
328.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
328.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
326.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
325.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
323.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
322.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
320.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
320.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
317.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
317.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
312.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
312.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
311.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
311.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
309.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
308.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
306.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
304.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
303.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
301.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
301.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
296.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
294.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
291.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
288.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
286.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
285.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
285.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
284.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
281.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
277.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
275.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
275.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
274.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
271.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
270.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
268.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
260.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
254.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
253.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
252.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
248.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
244.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
240.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
240.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
240.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
240.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
239.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
239.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
237.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
230.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
222.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
220.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
219.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
214.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
212.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
207.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
204.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
203.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
203.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
201.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
201.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
198.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
197.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
197.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
194.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
185.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
185.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
184.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
181.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
161.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
159.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
157.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
153.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
152.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
152.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
151.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
149.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
148.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
134.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
121.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
116.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
109.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETFB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
292.8
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
1527.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
1318.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
1009.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
857.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
756.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
748.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
731.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
724.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
663.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
649.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
647.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
645.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
625.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
574.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
565.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
565.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
561.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
558.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
546.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
544.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
541.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
533.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
520.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
518.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
512.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
504.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
498.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
488.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
478.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
474.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
473.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
471.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
452.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
451.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
449.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
448.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
442.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
419.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
413.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
412.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
412.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
408.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
408.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
406.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
401.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
400.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
396.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
394.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
389.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
386.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
384.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
375.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
374.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
373.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
372.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
366.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
361.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
358.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
355.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
351.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
351.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
344.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
344.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
341.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
339.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
335.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
334.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
334.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
331.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
327.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
326.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
324.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
320.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
318.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
317.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
315.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
314.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
314.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
314.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
313.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
313.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
313.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
311.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
309.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
306.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
305.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
293.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
293.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
287.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
286.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
284.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
283.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
283.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
282.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
280.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
278.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
276.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
274.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
274.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
271.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
270.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
269.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
269.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
267.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
267.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
267.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
265.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
265.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
260.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
258.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
258.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
257.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
256.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
256.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
253.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
253.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
252.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
252.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
251.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
251.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
247.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
243.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
241.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
241.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
240.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
235.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
226.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
225.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
225.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
223.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
221.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
221.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
219.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
218.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
218.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
217.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
215.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
214.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
212.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
209.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
207.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
205.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
203.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
201.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
201.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
201.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
199.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
199.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
199.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
197.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
196.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
194.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
192.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
191.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
190.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
190.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
189.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
188.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
186.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
186.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
184.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
181.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
181.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
181.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
179.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
178.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
177.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
176.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
176.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
174.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
173.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
172.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
171.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
170.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
170.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
169.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
169.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
168.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
167.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
167.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
166.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
165.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
163.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
162.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
160.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
158.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
156.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
156.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
155.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
152.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
148.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
147.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
147.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
145.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
142.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
141.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
141.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
140.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
139.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
139.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
135.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
127.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
127.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
126.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
126.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
125.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
124.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
122.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
117.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
116.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
115.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
114.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
114.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
113.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
107.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
105.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
100.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
92.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
91.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
90.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
89.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
89.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
89.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
82.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
79.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
78.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
75.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
70.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
62.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.9
925
Tumor
1.1
755
Tumor
0.9
452
Normal
0.8
636
Normal
0.8
915
Tumor
0.7
477
Tumor
0.7
1045
Tumor
0.7
944
Normal
0.7
615
Tumor
0.6
924
Normal
0.6
128
Normal
0.6
538
Normal
0.6
546
Normal
0.6
484
Normal
0.6
864
Normal
0.6
742
Normal
0.6
922
Normal
0.6
227
Tumor
0.6
785
Tumor
0.6
1028
Normal
0.5
513
Tumor
0.5
745
Tumor
0.5
515
Tumor
0.5
488
Normal
0.5
328
Normal
0.5
1032
Normal
0.5
698
Normal
0.5
918
Normal
0.5
914
Normal
0.5
746
Normal
0.5
1041
Tumor
0.5
462
Normal
0.5
984
Normal
0.5
1026
Normal
0.5
738
Normal
0.5
756
Normal
0.5
568
Normal
0.5
618
Normal
0.5
554
Normal
0.5
824
Normal
0.5
1027
Tumor
0.5
448
Normal
0.5
866
Normal
0.5
172
Normal
0.5
1014
Normal
0.5
412
Normal
0.5
868
Normal
0.4
982
Normal
0.4
722
Normal
0.4
342
Normal
0.4
786
Normal
0.4
1016
Normal
0.4
858
Normal
0.4
436
Normal
0.4
1022
Normal
0.4
862
Normal
0.4
1046
Normal
0.4
526
Normal
0.4
916
Normal
0.4
228
Normal
0.4
723
Tumor
0.4
332
Normal
0.4
873
Tumor
0.4
426
Normal
0.4
558
Normal
0.4
955
Tumor
0.4
534
Normal
0.4
686
Normal
0.4
616
Normal
0.4
714
Normal
0.4
926
Normal
0.4
1043
Tumor
0.4
186
Normal
0.4
778
Normal
0.4
481
Tumor
0.4
443
Tumor
0.4
852
Normal
0.4
954
Normal
0.4
468
Normal
0.4
716
Normal
0.4
354
Normal
0.4
524
Normal
0.4
528
Normal
0.3
376
Normal
0.3
127
Tumor
0.3
564
Normal
0.3
362
Normal
0.3
648
Normal
0.3
298
Normal
0.3
664
Normal
0.3
474
Normal
0.3
472
Normal
0.3
232
Normal
0.3
388
Normal
0.3
867
Tumor
0.3
952
Normal
0.3
563
Tumor
0.3
642
Normal
0.3
478
Normal
0.3
851
Tumor
0.3
518
Normal
0.3
1025
Tumor
0.3
278
Normal
0.3
132
Normal
0.3
938
Normal
0.3
956
Normal
0.3
514
Normal
0.3
344
Normal
0.3
696
Normal
0.3
816
Normal
0.3
878
Normal
0.3
465
Tumor
0.3
744
Normal
0.3
148
Normal
0.3
416
Normal
0.3
1044
Normal
0.3
494
Normal
0.3
284
Normal
0.3
912
Normal
0.3
976
Normal
0.3
911
Tumor
0.3
196
Normal
0.3
352
Normal
0.3
356
Normal
0.3
571
Tumor
0.3
466
Normal
0.3
628
Normal
0.3
394
Normal
0.3
361
Tumor
0.3
212
Normal
0.3
364
Normal
0.3
1015
Tumor
0.3
978
Normal
0.3
428
Normal
0.3
414
Normal
0.3
874
Normal
0.2
968
Normal
0.2
713
Tumor
0.2
142
Normal
0.2
286
Normal
0.2
482
Normal
0.2
224
Normal
0.2
572
Normal
0.2
516
Normal
0.2
124
Normal
0.2
258
Normal
0.2
964
Normal
0.2
1042
Normal
0.2
728
Normal
0.2
635
Tumor
0.2
393
Tumor
0.2
214
Normal
0.2
721
Tumor
0.2
695
Tumor
0.2
424
Normal
0.2
218
Normal
0.2
262
Normal
0.2
461
Tumor
0.2
314
Normal
0.2
574
Normal
0.2
464
Normal
0.2
114
Normal
0.2
162
Normal
0.2
487
Tumor
0.2
966
Normal
0.2
135
Tumor
0.2
666
Normal
0.2
446
Normal
0.2
483
Tumor
0.2
268
Normal
0.2
422
Normal
0.2
126
Normal
0.2
958
Normal
0.2
358
Normal
0.1
818
Normal
0.1
366
Normal
0.1
222
Normal
0.1
882
Normal
0.1
434
Normal
0.1
261
Tumor
0.1
312
Normal
0.1
981
Tumor
0.1
415
Tumor
0.1
672
Normal
0.1
662
Normal
0.1
392
Normal
0.1
553
Tumor
0.1
517
Tumor
0.1
111
Normal
0.1
857
Tumor
0.1
368
Normal
0.1
137
Tumor
0.1
113
Tumor
0.1
567
Tumor
0.1
863
Tumor
0.1
951
Tumor
0.1
396
Normal
0.0
741
Tumor
0.0
188
Normal
0.0
272
Normal
0.0
136
Normal
0.0
138
Normal
0.0
327
Tumor
0.0
884
Normal
0.0
423
Tumor
0.0
267
Tumor
0.0
112
Tumor
0.0
365
Tumor
0.0
537
Tumor
0.0
411
Tumor
0.0
432
Normal
0.0
384
Normal
0.0
431
Tumor
0.0
498
Normal
0.0
883
Tumor
0.0
386
Normal
-0.1
1031
Tumor
-0.1
451
Tumor
-0.1
913
Tumor
-0.1
456
Normal
-0.1
923
Tumor
-0.1
685
Tumor
-0.1
433
Tumor
-0.1
861
Tumor
-0.1
383
Tumor
-0.1
363
Tumor
-0.1
536
Normal
-0.1
341
Tumor
-0.1
921
Tumor
-0.2
823
Tumor
-0.2
444
Normal
-0.2
937
Tumor
-0.2
421
Tumor
-0.2
665
Tumor
-0.2
492
Normal
-0.2
171
Tumor
-0.2
523
Tumor
-0.2
535
Tumor
-0.2
473
Tumor
-0.2
777
Tumor
-0.2
187
Tumor
-0.2
445
Tumor
-0.2
141
Tumor
-0.2
145
Tumor
-0.3
557
Tumor
-0.3
715
Tumor
-0.3
231
Tumor
-0.3
357
Tumor
-0.3
185
Tumor
-0.3
217
Tumor
-0.3
387
Tumor
-0.3
146
Normal
-0.3
191
Tumor
-0.3
963
Tumor
-0.3
471
Tumor
-0.3
953
Tumor
-0.3
641
Tumor
-0.3
391
Tumor
-0.4
967
Tumor
-0.4
297
Tumor
-0.4
527
Tumor
-0.4
192
Normal
-0.4
647
Tumor
-0.4
195
Tumor
-0.4
977
Tumor
-0.4
1013
Tumor
-0.4
221
Tumor
-0.4
881
Tumor
-0.4
123
Tumor
-0.4
727
Tumor
-0.4
1021
Tumor
-0.4
617
Tumor
-0.5
161
Tumor
-0.5
367
Tumor
-0.5
447
Tumor
-0.5
814
Normal
-0.5
737
Tumor
-0.5
573
Tumor
-0.5
353
Tumor
-0.5
435
Tumor
-0.5
257
Tumor
-0.5
425
Tumor
-0.5
285
Tumor
-0.5
813
Tumor
-0.5
525
Tumor
-0.5
413
Tumor
-0.5
943
Tumor
-0.6
975
Tumor
-0.6
455
Tumor
-0.6
533
Tumor
-0.6
271
Tumor
-0.6
817
Tumor
-0.6
213
Tumor
-0.6
957
Tumor
-0.7
865
Tumor
-0.7
983
Tumor
-0.7
493
Tumor
-0.7
223
Tumor
-0.7
697
Tumor
-0.7
147
Tumor
-0.7
663
Tumor
-0.7
277
Tumor
-0.7
355
Tumor
-0.8
965
Tumor
-0.8
467
Tumor
-0.8
331
Tumor
-0.8
463
Tumor
-0.8
131
Tumor
-0.9
427
Tumor
-0.9
815
Tumor
-0.9
917
Tumor
-0.9
671
Tumor
-0.9
491
Tumor
-0.9
497
Tumor
-0.9
724
Normal
-0.9
877
Tumor
-1.0
743
Tumor
-1.0
313
Tumor
-1.0
375
Tumor
-1.0
395
Tumor
-1.0
311
Tumor
-1.2
385
Tumor
-1.2
545
Tumor
-1.2
661
Tumor
-1.2
125
Tumor
-1.3
283
Tumor
-1.3
343
Tumor
-1.4
351
Tumor
-1.4
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.