MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:149.6 nTPM
HPA Brain:84.1 nTPM
GTEx:149.6 nTPM
FANTOM5:29.4 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:5.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
2586 Male, age 75, left hemisphere 120.0
2666 Male, age 74, left hemisphere 106.6
2828 Female, age 72, unknown 93.1
1870 Female, age 42, unknown 85.8
1830 Male, age 51, unknown 72.4
1827 Male, age 72, unknown 70.8
1833 Male, age 53, unknown 69.8
2411 Female, age 72, unknown 67.3
2019 Male, age 18, unknown 66.6
2219 Male, age 76, both hemispheres 61.1
Dorsal raphe nucleus
nTPM: 71.1
2016 Female, age 72, unknown 79.6
1828 Male, age 53, unknown 72.2
2047 Male, age 72, unknown 70.9
2298 Female, age 72, unknown 67.7
2750 Male, age 76, both hemispheres 64.9
Inferior colliculus
nTPM: 75.1
2849 Male, age 72, unknown 82.6
1890 Male, age 53, unknown 76.7
2097 Female, age 72, unknown 72.0
1848 Female, age 42, unknown 69.3
Median raphe nucleus
nTPM: 70.6
2220 Male, age 76, midline 70.6
Periaquaductal grey, anterior
nTPM: 75.6
2502 Female, age 75, unknown 87.3
1795 Male, age 51, unknown 73.5
1947 Male, age 18, unknown 66.2
Periaquaductal grey, dorsal
nTPM: 63.9
1840 Male, age 53, unknown 69.1
1831 Male, age 72, unknown 67.7
2850 Male, age 76, both hemispheres 62.0
2464 Female, age 72, unknown 56.7
Periaquaductal grey, lateral
nTPM: 60.6
2053 Male, age 18, unknown 66.4
2140 Male, age 76, both hemispheres 61.9
2272 Male, age 74, both hemispheres 53.4
Pretectal area
nTPM: 63.4
2407 Male, age 75, both hemispheres 83.9
2825 Male, age 18, unknown 70.6
2316 Male, age 76, right hemisphere 69.0
2007 Male, age 72, unknown 65.4
2667 Female, age 75, unknown 62.8
1815 Male, age 53, unknown 60.8
1817 Female, age 42, unknown 60.2
2224 Female, age 72, unknown 58.9
1816 Male, age 51, unknown 58.8
2273 Male, age 74, both hemispheres 55.5
1944 Female, age 72, unknown 51.6
Red nucleus
nTPM: 84.1
2584 Male, age 75, left hemisphere 112.7
2503 Female, age 72, unknown 101.1
2227 Male, age 72, unknown 96.4
2769 Male, age 72, unknown 93.6
1865 Male, age 51, unknown 86.9
1904 Male, age 53, unknown 82.8
2725 Female, age 75, unknown 79.1
2785 Male, age 18, unknown 76.6
1821 Female, age 72, unknown 74.4
2588 Male, age 74, left hemisphere 72.8
1954 Female, age 42, unknown 69.0
2823 Male, age 76, right hemisphere 63.4
Substantia nigra
nTPM: 69.8
2665 Male, age 74, both hemispheres 93.6
2699 Male, age 18, unknown 89.2
2583 Male, age 75, right hemisphere 79.7
1851 Male, age 51, unknown 76.2
1916 Female, age 42, unknown 71.3
1941 Male, age 53, unknown 68.5
2590 Female, age 75, unknown 65.9
1889 Female, age 72, unknown 58.4
2409 Female, age 72, unknown 49.5
2241 Male, age 72, unknown 46.1
Superior colliculus
nTPM: 76.0
2664 Male, age 75, both hemispheres 125.0
1913 Female, age 42, unknown 81.1
1995 Male, age 72, unknown 77.2
2587 Male, age 74, left hemisphere 76.3
1796 Male, age 53, unknown 75.7
1839 Male, age 51, unknown 70.9
2668 Female, age 75, unknown 69.5
2261 Male, age 18, unknown 67.5
2087 Female, age 72, unknown 61.9
1895 Male, age 76, right hemisphere 54.8
Ventral tegmental area
nTPM: 71.6
1915 Female, age 42, unknown 81.4
2223 Female, age 72, unknown 80.5
1942 Male, age 51, unknown 76.4
2021 Male, age 53, unknown 72.4
2218 Male, age 76, both hemispheres 62.1
2410 Female, age 72, unknown 57.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 149.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 149.6
Samples: 139

Max nTPM: 412.8
Min nTPM: 43.6
Std nTPM: 52.3
Median nTPM: 146.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 412.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 310.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 287.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 258.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 252.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 250.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 238.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 232.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 227.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 227.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 223.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.4
FF:10158-103A5 76 years, female 29.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.6
Samples: 4

Max nTPM: 43.0
Min nTPM: 31.3
Sample A Female 43.0
Sample B Female 39.3
Sample C Male 31.3
Sample D Male 36.6
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 57.9
Min nTPM: 30.3
Sample A Female 57.9
Sample B Female 36.0
Sample C Male 30.3
Sample D Male 33.9
Periaqueductal gray
nTPM: 31.0
Samples: 3

Max nTPM: 33.4
Min nTPM: 27.4
Sample B Female 33.4
Sample C Male 32.2
Sample D Male 27.4
Superior colliculi
nTPM: 41.2
Samples: 4

Max nTPM: 46.8
Min nTPM: 32.8
Sample A Female 46.5
Sample B Female 46.8
Sample C Male 32.8
Sample D Male 38.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 5.5
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 5.5
Sample C Female 5.4
Sample D Female 5.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
68193067 Antisense, RP_040914_01_D05, Mouse strain C57BL/6J (56 days, male) 1.8

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