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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DMAC2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
48.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
46.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
221
Tumor
2.0
567
Tumor
1.2
745
Tumor
1.1
641
Tumor
1.0
627
Tumor
1.0
517
Tumor
0.9
112
Tumor
0.9
823
Tumor
0.9
1043
Tumor
0.8
443
Tumor
0.8
851
Tumor
0.8
921
Tumor
0.8
491
Tumor
0.7
463
Tumor
0.7
563
Tumor
0.7
981
Tumor
0.7
111
Normal
0.6
737
Tumor
0.6
912
Normal
0.6
557
Tumor
0.6
925
Tumor
0.6
328
Normal
0.6
147
Tumor
0.5
387
Tumor
0.5
553
Tumor
0.5
277
Tumor
0.5
213
Tumor
0.5
713
Tumor
0.5
127
Tumor
0.5
284
Normal
0.4
171
Tumor
0.4
362
Normal
0.4
396
Normal
0.4
514
Normal
0.4
421
Tumor
0.4
671
Tumor
0.4
285
Tumor
0.4
114
Normal
0.4
227
Tumor
0.4
351
Tumor
0.3
911
Tumor
0.3
383
Tumor
0.3
483
Tumor
0.3
615
Tumor
0.3
1041
Tumor
0.3
498
Normal
0.3
963
Tumor
0.3
132
Normal
0.3
518
Normal
0.3
571
Tumor
0.3
884
Normal
0.3
341
Tumor
0.3
983
Tumor
0.2
546
Normal
0.2
642
Normal
0.2
286
Normal
0.2
564
Normal
0.2
951
Tumor
0.2
628
Normal
0.2
473
Tumor
0.2
358
Normal
0.2
874
Normal
0.2
353
Tumor
0.2
937
Tumor
0.2
525
Tumor
0.2
262
Normal
0.2
212
Normal
0.2
113
Tumor
0.2
685
Tumor
0.2
862
Normal
0.2
188
Normal
0.2
558
Normal
0.2
278
Normal
0.2
391
Tumor
0.2
432
Normal
0.2
257
Tumor
0.2
434
Normal
0.2
314
Normal
0.2
756
Normal
0.2
231
Tumor
0.2
224
Normal
0.2
327
Tumor
0.2
228
Normal
0.2
425
Tumor
0.2
283
Tumor
0.2
723
Tumor
0.1
864
Normal
0.1
376
Normal
0.1
881
Tumor
0.1
866
Normal
0.1
145
Tumor
0.1
865
Tumor
0.1
861
Tumor
0.1
852
Normal
0.1
635
Tumor
0.1
696
Normal
0.1
436
Normal
0.1
395
Tumor
0.1
1027
Tumor
0.1
312
Normal
0.1
914
Normal
0.1
468
Normal
0.1
464
Normal
0.1
446
Normal
0.1
526
Normal
0.1
982
Normal
0.1
923
Tumor
0.1
1045
Tumor
0.1
161
Tumor
0.1
916
Normal
0.1
474
Normal
0.1
361
Tumor
0.1
722
Normal
0.1
414
Normal
0.1
883
Tumor
0.1
456
Normal
0.1
573
Tumor
0.1
882
Normal
0.1
136
Normal
0.1
364
Normal
0.1
172
Normal
0.1
428
Normal
0.1
222
Normal
0.1
451
Tumor
0.1
786
Normal
0.1
426
Normal
0.1
528
Normal
0.1
494
Normal
0.1
162
Normal
0.1
271
Tumor
0.1
636
Normal
0.0
367
Tumor
0.0
815
Tumor
0.0
394
Normal
0.0
214
Normal
0.0
816
Normal
0.0
1026
Normal
0.0
462
Normal
0.0
918
Normal
0.0
714
Normal
0.0
967
Tumor
0.0
448
Normal
0.0
363
Tumor
0.0
258
Normal
0.0
484
Normal
0.0
616
Normal
0.0
534
Normal
0.0
922
Normal
0.0
232
Normal
0.0
388
Normal
0.0
1025
Tumor
0.0
698
Normal
0.0
268
Normal
0.0
466
Normal
0.0
196
Normal
0.0
1014
Normal
0.0
742
Normal
0.0
297
Tumor
0.0
785
Tumor
0.0
924
Normal
0.0
386
Normal
0.0
873
Tumor
0.0
366
Normal
0.0
964
Normal
0.0
482
Normal
0.0
665
Tumor
0.0
392
Normal
0.0
481
Tumor
0.0
647
Tumor
-0.1
223
Tumor
-0.1
492
Normal
-0.1
868
Normal
-0.1
877
Tumor
-0.1
493
Tumor
-0.1
778
Normal
-0.1
1042
Normal
-0.1
142
Normal
-0.1
332
Normal
-0.1
716
Normal
-0.1
572
Normal
-0.1
354
Normal
-0.1
384
Normal
-0.1
978
Normal
-0.1
1031
Tumor
-0.1
824
Normal
-0.1
124
Normal
-0.1
185
Tumor
-0.1
728
Normal
-0.1
267
Tumor
-0.1
954
Normal
-0.1
186
Normal
-0.1
461
Tumor
-0.1
944
Normal
-0.1
497
Tumor
-0.1
666
Normal
-0.1
715
Tumor
-0.1
568
Normal
-0.1
513
Tumor
-0.1
472
Normal
-0.1
444
Normal
-0.1
126
Normal
-0.1
537
Tumor
-0.1
452
Normal
-0.1
393
Tumor
-0.1
661
Tumor
-0.1
375
Tumor
-0.1
858
Normal
-0.1
435
Tumor
-0.1
1016
Normal
-0.1
195
Tumor
-0.1
148
Normal
-0.1
342
Normal
-0.1
957
Tumor
-0.1
365
Tumor
-0.1
422
Normal
-0.1
516
Normal
-0.1
135
Tumor
-0.1
664
Normal
-0.1
413
Tumor
-0.1
524
Normal
-0.1
272
Normal
-0.1
618
Normal
-0.1
724
Normal
-0.2
478
Normal
-0.2
938
Normal
-0.2
926
Normal
-0.2
125
Tumor
-0.2
554
Normal
-0.2
385
Tumor
-0.2
1044
Normal
-0.2
477
Tumor
-0.2
1046
Normal
-0.2
138
Normal
-0.2
488
Normal
-0.2
878
Normal
-0.2
331
Tumor
-0.2
187
Tumor
-0.2
471
Tumor
-0.2
857
Tumor
-0.2
218
Normal
-0.2
298
Normal
-0.2
313
Tumor
-0.2
352
Normal
-0.2
686
Normal
-0.2
368
Normal
-0.2
648
Normal
-0.2
755
Tumor
-0.2
915
Tumor
-0.2
128
Normal
-0.2
976
Normal
-0.2
424
Normal
-0.2
433
Tumor
-0.2
741
Tumor
-0.2
814
Normal
-0.2
952
Normal
-0.2
574
Normal
-0.2
535
Tumor
-0.2
662
Normal
-0.2
344
Normal
-0.2
465
Tumor
-0.3
943
Tumor
-0.3
445
Tumor
-0.3
192
Normal
-0.3
412
Normal
-0.3
958
Normal
-0.3
261
Tumor
-0.3
1028
Normal
-0.3
217
Tumor
-0.3
913
Tumor
-0.3
467
Tumor
-0.3
538
Normal
-0.3
818
Normal
-0.3
975
Tumor
-0.3
721
Tumor
-0.3
617
Tumor
-0.3
867
Tumor
-0.3
411
Tumor
-0.3
746
Normal
-0.3
137
Tumor
-0.3
431
Tumor
-0.3
357
Tumor
-0.3
984
Normal
-0.3
738
Normal
-0.3
968
Normal
-0.4
311
Tumor
-0.4
131
Tumor
-0.4
416
Normal
-0.4
956
Normal
-0.4
955
Tumor
-0.4
663
Tumor
-0.4
191
Tumor
-0.4
695
Tumor
-0.4
953
Tumor
-0.4
966
Normal
-0.4
146
Normal
-0.4
343
Tumor
-0.4
356
Normal
-0.4
1032
Normal
-0.5
977
Tumor
-0.5
533
Tumor
-0.5
672
Normal
-0.5
123
Tumor
-0.5
211
Tumor
-0.5
863
Tumor
-0.5
917
Tumor
-0.5
697
Tumor
-0.5
1013
Tumor
-0.5
427
Tumor
-0.5
536
Normal
-0.5
141
Tumor
-0.5
455
Tumor
-0.5
727
Tumor
-0.6
813
Tumor
-0.6
965
Tumor
-0.6
487
Tumor
-0.6
447
Tumor
-0.6
817
Tumor
-0.6
515
Tumor
-0.7
1015
Tumor
-0.7
777
Tumor
-0.7
1022
Normal
-0.7
415
Tumor
-0.7
744
Normal
-0.7
1021
Tumor
-0.7
545
Tumor
-0.7
423
Tumor
-0.7
527
Tumor
-0.7
355
Tumor
-0.8
743
Tumor
-0.9
523
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.