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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPUL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
299.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
200.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
143.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
140.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
135.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
133.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
129.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
124.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
123.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
117.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
116.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
108.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
107.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
103.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
102.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
101.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
101.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
100.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
99.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
94.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
94.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
90.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
89.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
88.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
88.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
87.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
87.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
85.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
84.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
84.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
83.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
83.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
83.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
82.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
82.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
81.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
80.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
80.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
79.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
78.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
78.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
78.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
76.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
75.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
74.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
73.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
72.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
72.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
71.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
71.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
71.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
71.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
70.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
69.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
69.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
69.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
68.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
68.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
68.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
67.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
67.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
66.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
66.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
65.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
65.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
64.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
64.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
64.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
63.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
62.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
62.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
61.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
60.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
59.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
59.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
58.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
58.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
58.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
57.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
56.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
55.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
55.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
55.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
54.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
54.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
54.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
53.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
52.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
52.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
52.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
52.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
52.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
51.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
50.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
50.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
50.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
50.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
49.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
49.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
48.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
48.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
47.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
46.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
46.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
45.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
45.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
45.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
45.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
45.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
45.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
42.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
42.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
42.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
41.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
40.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
39.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
39.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
39.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
38.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
38.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
37.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
37.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
36.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
32.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
28.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
23.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HNRNPUL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.6
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
107.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
101.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
100.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
93.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
90.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
88.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
82.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
79.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
78.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
75.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
75.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
75.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
74.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
73.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
70.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
70.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
69.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
66.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
65.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
64.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
62.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
61.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
60.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
60.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
58.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
58.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
57.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
56.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
55.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
54.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
52.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
51.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
51.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
50.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
49.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
48.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
48.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
47.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
46.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
45.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
45.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
43.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
39.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
37.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
33.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
1.5
425
Tumor
1.4
443
Tumor
1.3
671
Tumor
0.9
661
Tumor
0.9
967
Tumor
0.9
975
Tumor
0.9
497
Tumor
0.9
517
Tumor
0.8
567
Tumor
0.8
635
Tumor
0.8
737
Tumor
0.8
921
Tumor
0.8
112
Tumor
0.8
285
Tumor
0.7
965
Tumor
0.7
545
Tumor
0.6
647
Tumor
0.6
341
Tumor
0.6
131
Tumor
0.6
1021
Tumor
0.6
123
Tumor
0.6
271
Tumor
0.6
983
Tumor
0.6
881
Tumor
0.5
877
Tumor
0.5
231
Tumor
0.5
977
Tumor
0.5
331
Tumor
0.5
865
Tumor
0.5
431
Tumor
0.5
815
Tumor
0.5
297
Tumor
0.5
427
Tumor
0.5
743
Tumor
0.4
221
Tumor
0.4
817
Tumor
0.4
385
Tumor
0.4
277
Tumor
0.4
963
Tumor
0.4
917
Tumor
0.4
1031
Tumor
0.4
777
Tumor
0.4
421
Tumor
0.4
171
Tumor
0.4
483
Tumor
0.4
351
Tumor
0.4
813
Tumor
0.3
161
Tumor
0.3
715
Tumor
0.3
641
Tumor
0.3
553
Tumor
0.3
951
Tumor
0.3
125
Tumor
0.3
523
Tumor
0.3
943
Tumor
0.3
455
Tumor
0.3
515
Tumor
0.3
493
Tumor
0.3
447
Tumor
0.3
433
Tumor
0.3
883
Tumor
0.3
814
Normal
0.3
451
Tumor
0.3
785
Tumor
0.2
367
Tumor
0.2
211
Tumor
0.2
923
Tumor
0.2
343
Tumor
0.2
185
Tumor
0.2
213
Tumor
0.2
911
Tumor
0.2
823
Tumor
0.2
1015
Tumor
0.2
527
Tumor
0.2
461
Tumor
0.2
383
Tumor
0.2
393
Tumor
0.2
311
Tumor
0.2
135
Tumor
0.2
395
Tumor
0.2
913
Tumor
0.2
267
Tumor
0.2
355
Tumor
0.2
357
Tumor
0.2
863
Tumor
0.2
477
Tumor
0.2
665
Tumor
0.2
413
Tumor
0.1
411
Tumor
0.1
471
Tumor
0.1
957
Tumor
0.1
223
Tumor
0.1
387
Tumor
0.1
663
Tumor
0.1
724
Normal
0.1
873
Tumor
0.1
537
Tumor
0.1
473
Tumor
0.1
141
Tumor
0.1
1013
Tumor
0.1
444
Normal
0.1
727
Tumor
0.1
481
Tumor
0.1
937
Tumor
0.1
697
Tumor
0.1
467
Tumor
0.1
1045
Tumor
0.0
915
Tumor
0.0
127
Tumor
0.0
375
Tumor
0.0
491
Tumor
0.0
423
Tumor
0.0
755
Tumor
0.0
525
Tumor
0.0
571
Tumor
0.0
573
Tumor
0.0
745
Tumor
0.0
435
Tumor
0.0
557
Tumor
0.0
492
Normal
0.0
741
Tumor
0.0
445
Tumor
0.0
192
Normal
0.0
563
Tumor
0.0
465
Tumor
0.0
867
Tumor
0.0
617
Tumor
0.0
1041
Tumor
0.0
426
Normal
0.0
857
Tumor
0.0
615
Tumor
0.0
861
Tumor
0.0
533
Tumor
0.0
187
Tumor
-0.1
137
Tumor
-0.1
538
Normal
-0.1
113
Tumor
-0.1
415
Tumor
-0.1
365
Tumor
-0.1
851
Tumor
-0.1
268
Normal
-0.1
535
Tumor
-0.1
434
Normal
-0.1
391
Tumor
-0.1
878
Normal
-0.1
1043
Tumor
-0.1
353
Tumor
-0.1
195
Tumor
-0.1
685
Tumor
-0.1
147
Tumor
-0.1
191
Tumor
-0.1
916
Normal
-0.1
478
Normal
-0.1
327
Tumor
-0.1
536
Normal
-0.1
695
Tumor
-0.1
744
Normal
-0.1
925
Tumor
-0.1
224
Normal
-0.1
713
Tumor
-0.1
498
Normal
-0.1
363
Tumor
-0.1
283
Tumor
-0.2
284
Normal
-0.2
217
Tumor
-0.2
524
Normal
-0.2
146
Normal
-0.2
966
Normal
-0.2
884
Normal
-0.2
422
Normal
-0.2
636
Normal
-0.2
313
Tumor
-0.2
1025
Tumor
-0.2
261
Tumor
-0.2
818
Normal
-0.2
124
Normal
-0.2
824
Normal
-0.2
361
Tumor
-0.2
428
Normal
-0.2
627
Tumor
-0.2
298
Normal
-0.2
882
Normal
-0.2
312
Normal
-0.2
516
Normal
-0.2
924
Normal
-0.2
344
Normal
-0.2
912
Normal
-0.2
456
Normal
-0.2
446
Normal
-0.2
858
Normal
-0.2
954
Normal
-0.2
436
Normal
-0.2
721
Tumor
-0.2
866
Normal
-0.2
554
Normal
-0.2
1028
Normal
-0.3
1027
Tumor
-0.3
922
Normal
-0.3
188
Normal
-0.3
432
Normal
-0.3
424
Normal
-0.3
487
Tumor
-0.3
212
Normal
-0.3
672
Normal
-0.3
414
Normal
-0.3
386
Normal
-0.3
145
Tumor
-0.3
228
Normal
-0.3
142
Normal
-0.3
214
Normal
-0.3
126
Normal
-0.3
286
Normal
-0.3
278
Normal
-0.3
664
Normal
-0.3
918
Normal
-0.3
852
Normal
-0.3
262
Normal
-0.3
968
Normal
-0.3
746
Normal
-0.3
484
Normal
-0.3
955
Tumor
-0.3
472
Normal
-0.3
1044
Normal
-0.3
138
Normal
-0.3
984
Normal
-0.3
662
Normal
-0.3
392
Normal
-0.3
958
Normal
-0.3
257
Tumor
-0.3
342
Normal
-0.3
412
Normal
-0.3
778
Normal
-0.3
352
Normal
-0.3
518
Normal
-0.3
464
Normal
-0.3
816
Normal
-0.3
981
Tumor
-0.3
628
Normal
-0.3
952
Normal
-0.3
1046
Normal
-0.3
938
Normal
-0.3
568
Normal
-0.3
186
Normal
-0.3
114
Normal
-0.3
368
Normal
-0.3
462
Normal
-0.3
864
Normal
-0.3
272
Normal
-0.3
366
Normal
-0.3
452
Normal
-0.3
874
Normal
-0.3
332
Normal
-0.3
738
Normal
-0.3
488
Normal
-0.3
494
Normal
-0.3
574
Normal
-0.3
716
Normal
-0.3
926
Normal
-0.3
358
Normal
-0.3
384
Normal
-0.3
148
Normal
-0.3
546
Normal
-0.3
642
Normal
-0.4
976
Normal
-0.4
982
Normal
-0.4
742
Normal
-0.4
448
Normal
-0.4
698
Normal
-0.4
111
Normal
-0.4
1016
Normal
-0.4
686
Normal
-0.4
416
Normal
-0.4
364
Normal
-0.4
482
Normal
-0.4
964
Normal
-0.4
474
Normal
-0.4
914
Normal
-0.4
862
Normal
-0.4
468
Normal
-0.4
953
Tumor
-0.4
648
Normal
-0.4
172
Normal
-0.4
362
Normal
-0.4
356
Normal
-0.4
328
Normal
-0.4
396
Normal
-0.4
956
Normal
-0.4
666
Normal
-0.4
526
Normal
-0.4
218
Normal
-0.4
558
Normal
-0.4
1026
Normal
-0.4
222
Normal
-0.4
376
Normal
-0.4
162
Normal
-0.4
564
Normal
-0.4
354
Normal
-0.4
232
Normal
-0.4
1022
Normal
-0.4
528
Normal
-0.4
944
Normal
-0.4
466
Normal
-0.4
786
Normal
-0.4
1032
Normal
-0.4
196
Normal
-0.4
534
Normal
-0.4
258
Normal
-0.4
728
Normal
-0.4
572
Normal
-0.4
1042
Normal
-0.4
314
Normal
-0.4
868
Normal
-0.4
1014
Normal
-0.4
128
Normal
-0.4
696
Normal
-0.5
394
Normal
-0.5
618
Normal
-0.5
136
Normal
-0.5
388
Normal
-0.5
723
Tumor
-0.5
132
Normal
-0.5
513
Tumor
-0.5
756
Normal
-0.5
978
Normal
-0.5
714
Normal
-0.5
616
Normal
-0.5
514
Normal
-0.6
227
Tumor
-0.6
722
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.