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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TJP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TJP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.6
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
1.2
413
Tumor
1.0
641
Tumor
1.0
221
Tumor
0.9
271
Tumor
0.9
865
Tumor
0.8
857
Tumor
0.8
277
Tumor
0.8
443
Tumor
0.7
881
Tumor
0.7
445
Tumor
0.7
395
Tumor
0.7
663
Tumor
0.7
147
Tumor
0.7
527
Tumor
0.6
471
Tumor
0.6
131
Tumor
0.6
967
Tumor
0.6
937
Tumor
0.6
878
Normal
0.6
515
Tumor
0.6
955
Tumor
0.6
1031
Tumor
0.5
353
Tumor
0.5
384
Normal
0.5
617
Tumor
0.5
136
Normal
0.5
713
Tumor
0.5
975
Tumor
0.5
513
Tumor
0.5
737
Tumor
0.5
461
Tumor
0.5
426
Normal
0.5
422
Normal
0.5
697
Tumor
0.5
538
Normal
0.5
954
Normal
0.5
557
Tumor
0.5
357
Tumor
0.4
444
Normal
0.4
743
Tumor
0.4
331
Tumor
0.4
823
Tumor
0.4
864
Normal
0.4
824
Normal
0.4
452
Normal
0.4
738
Normal
0.4
695
Tumor
0.4
642
Normal
0.4
268
Normal
0.4
368
Normal
0.4
414
Normal
0.4
916
Normal
0.4
852
Normal
0.4
662
Normal
0.4
191
Tumor
0.4
918
Normal
0.4
917
Tumor
0.4
698
Normal
0.4
786
Normal
0.4
376
Normal
0.4
424
Normal
0.4
912
Normal
0.4
944
Normal
0.4
383
Tumor
0.4
951
Tumor
0.4
186
Normal
0.4
416
Normal
0.4
284
Normal
0.4
926
Normal
0.4
392
Normal
0.4
528
Normal
0.4
572
Normal
0.4
672
Normal
0.4
478
Normal
0.4
884
Normal
0.4
232
Normal
0.4
958
Normal
0.4
286
Normal
0.4
218
Normal
0.4
814
Normal
0.3
722
Normal
0.3
546
Normal
0.3
142
Normal
0.3
666
Normal
0.3
921
Tumor
0.3
278
Normal
0.3
628
Normal
0.3
124
Normal
0.3
723
Tumor
0.3
756
Normal
0.3
362
Normal
0.3
298
Normal
0.3
223
Tumor
0.3
262
Normal
0.3
982
Normal
0.3
162
Normal
0.3
464
Normal
0.3
462
Normal
0.3
664
Normal
0.3
858
Normal
0.3
285
Tumor
0.3
358
Normal
0.3
696
Normal
0.3
1046
Normal
0.3
188
Normal
0.3
636
Normal
0.3
616
Normal
0.3
524
Normal
0.3
446
Normal
0.3
468
Normal
0.3
778
Normal
0.3
222
Normal
0.3
618
Normal
0.3
366
Normal
0.3
111
Normal
0.3
494
Normal
0.3
514
Normal
0.3
721
Tumor
0.3
484
Normal
0.3
558
Normal
0.3
976
Normal
0.3
412
Normal
0.3
1022
Normal
0.3
686
Normal
0.3
312
Normal
0.3
214
Normal
0.3
448
Normal
0.3
1028
Normal
0.3
148
Normal
0.3
314
Normal
0.3
554
Normal
0.3
498
Normal
0.3
868
Normal
0.3
968
Normal
0.3
1014
Normal
0.3
332
Normal
0.3
352
Normal
0.3
423
Tumor
0.3
354
Normal
0.3
492
Normal
0.3
228
Normal
0.3
627
Tumor
0.3
436
Normal
0.2
922
Normal
0.2
132
Normal
0.2
813
Tumor
0.2
272
Normal
0.2
428
Normal
0.2
1016
Normal
0.2
396
Normal
0.2
195
Tumor
0.2
866
Normal
0.2
818
Normal
0.2
742
Normal
0.2
456
Normal
0.2
728
Normal
0.2
196
Normal
0.2
258
Normal
0.2
648
Normal
0.2
342
Normal
0.2
716
Normal
0.2
534
Normal
0.2
474
Normal
0.2
1044
Normal
0.2
466
Normal
0.2
964
Normal
0.2
447
Tumor
0.2
224
Normal
0.2
135
Tumor
0.2
432
Normal
0.2
1032
Normal
0.2
635
Tumor
0.2
172
Normal
0.2
388
Normal
0.2
386
Normal
0.2
882
Normal
0.2
128
Normal
0.2
924
Normal
0.2
545
Tumor
0.2
536
Normal
0.2
574
Normal
0.2
114
Normal
0.2
938
Normal
0.2
526
Normal
0.2
472
Normal
0.2
978
Normal
0.2
467
Tumor
0.2
375
Tumor
0.2
434
Normal
0.2
874
Normal
0.2
568
Normal
0.2
966
Normal
0.2
956
Normal
0.2
952
Normal
0.1
187
Tumor
0.1
356
Normal
0.1
1026
Normal
0.1
138
Normal
0.1
227
Tumor
0.1
344
Normal
0.1
1042
Normal
0.1
482
Normal
0.1
1021
Tumor
0.1
1025
Tumor
0.1
146
Normal
0.1
212
Normal
0.1
126
Normal
0.1
746
Normal
0.1
914
Normal
0.1
488
Normal
0.1
714
Normal
0.1
493
Tumor
0.1
564
Normal
0.1
516
Normal
0.1
943
Tumor
0.1
744
Normal
0.1
355
Tumor
0.1
341
Tumor
0.0
145
Tumor
0.0
816
Normal
0.0
984
Normal
0.0
862
Normal
0.0
777
Tumor
0.0
953
Tumor
0.0
877
Tumor
0.0
327
Tumor
0.0
365
Tumor
0.0
328
Normal
0.0
817
Tumor
0.0
364
Normal
0.0
297
Tumor
0.0
411
Tumor
0.0
518
Normal
0.0
161
Tumor
0.0
563
Tumor
0.0
415
Tumor
-0.1
394
Normal
-0.1
533
Tumor
-0.1
873
Tumor
-0.1
523
Tumor
-0.1
1027
Tumor
-0.1
983
Tumor
-0.1
141
Tumor
-0.1
463
Tumor
-0.1
883
Tumor
-0.1
217
Tumor
-0.1
957
Tumor
-0.1
1045
Tumor
-0.1
113
Tumor
-0.2
745
Tumor
-0.2
491
Tumor
-0.2
267
Tumor
-0.2
363
Tumor
-0.2
497
Tumor
-0.2
192
Normal
-0.2
343
Tumor
-0.2
851
Tumor
-0.2
125
Tumor
-0.2
311
Tumor
-0.2
421
Tumor
-0.3
393
Tumor
-0.3
923
Tumor
-0.3
487
Tumor
-0.4
213
Tumor
-0.4
615
Tumor
-0.4
671
Tumor
-0.4
455
Tumor
-0.4
915
Tumor
-0.4
435
Tumor
-0.4
481
Tumor
-0.4
361
Tumor
-0.4
925
Tumor
-0.4
571
Tumor
-0.5
185
Tumor
-0.5
211
Tumor
-0.5
257
Tumor
-0.5
427
Tumor
-0.5
385
Tumor
-0.5
313
Tumor
-0.5
465
Tumor
-0.5
431
Tumor
-0.6
477
Tumor
-0.6
863
Tumor
-0.6
963
Tumor
-0.6
261
Tumor
-0.6
483
Tumor
-0.6
137
Tumor
-0.6
433
Tumor
-0.7
755
Tumor
-0.7
977
Tumor
-0.7
981
Tumor
-0.7
1043
Tumor
-0.7
727
Tumor
-0.8
525
Tumor
-0.8
573
Tumor
-0.8
517
Tumor
-0.8
367
Tumor
-0.8
537
Tumor
-0.8
1041
Tumor
-0.9
231
Tumor
-0.9
391
Tumor
-0.9
567
Tumor
-0.9
351
Tumor
-0.9
665
Tumor
-0.9
965
Tumor
-1.0
535
Tumor
-1.0
387
Tumor
-1.0
647
Tumor
-1.1
785
Tumor
-1.1
685
Tumor
-1.1
283
Tumor
-1.1
127
Tumor
-1.1
112
Tumor
-1.2
451
Tumor
-1.2
1015
Tumor
-1.2
913
Tumor
-1.3
724
Normal
-1.3
1013
Tumor
-1.3
425
Tumor
-1.3
715
Tumor
-1.4
171
Tumor
-1.4
123
Tumor
-1.5
867
Tumor
-1.6
473
Tumor
-1.6
815
Tumor
-1.6
661
Tumor
-1.6
911
Tumor
-1.6
861
Tumor
-1.6
741
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
