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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
0.8
661
Tumor
0.8
341
Tumor
0.7
975
Tumor
0.7
213
Tumor
0.7
1031
Tumor
0.7
112
Tumor
0.6
433
Tumor
0.6
567
Tumor
0.6
921
Tumor
0.6
635
Tumor
0.6
777
Tumor
0.6
211
Tumor
0.6
425
Tumor
0.5
283
Tumor
0.5
1042
Normal
0.4
455
Tumor
0.4
126
Normal
0.4
343
Tumor
0.4
221
Tumor
0.4
451
Tumor
0.4
647
Tumor
0.4
553
Tumor
0.4
268
Normal
0.4
146
Normal
0.4
192
Normal
0.4
231
Tumor
0.4
715
Tumor
0.3
271
Tumor
0.3
814
Normal
0.3
383
Tumor
0.3
857
Tumor
0.3
983
Tumor
0.3
745
Tumor
0.3
431
Tumor
0.3
123
Tumor
0.3
737
Tumor
0.3
1043
Tumor
0.3
145
Tumor
0.3
262
Normal
0.3
967
Tumor
0.3
375
Tumor
0.3
147
Tumor
0.3
223
Tumor
0.3
185
Tumor
0.3
277
Tumor
0.3
171
Tumor
0.3
865
Tumor
0.3
141
Tumor
0.3
497
Tumor
0.3
697
Tumor
0.3
188
Normal
0.3
881
Tumor
0.3
367
Tumor
0.3
125
Tumor
0.3
785
Tumor
0.2
258
Normal
0.2
574
Normal
0.2
493
Tumor
0.2
217
Tumor
0.2
545
Tumor
0.2
138
Normal
0.2
447
Tumor
0.2
618
Normal
0.2
517
Tumor
0.2
128
Normal
0.2
1046
Normal
0.2
823
Tumor
0.2
443
Tumor
0.2
232
Normal
0.2
963
Tumor
0.2
1041
Tumor
0.2
131
Tumor
0.2
467
Tumor
0.2
261
Tumor
0.2
297
Tumor
0.2
353
Tumor
0.2
671
Tumor
0.2
917
Tumor
0.2
111
Normal
0.2
137
Tumor
0.2
444
Normal
0.2
492
Normal
0.2
755
Tumor
0.2
527
Tumor
0.2
344
Normal
0.2
132
Normal
0.2
218
Normal
0.2
114
Normal
0.2
615
Tumor
0.2
421
Tumor
0.2
538
Normal
0.2
877
Tumor
0.2
573
Tumor
0.2
743
Tumor
0.2
452
Normal
0.2
636
Normal
0.2
813
Tumor
0.2
563
Tumor
0.2
464
Normal
0.2
524
Normal
0.2
966
Normal
0.1
272
Normal
0.1
365
Tumor
0.1
558
Normal
0.1
817
Tumor
0.1
191
Tumor
0.1
331
Tumor
0.1
214
Normal
0.1
535
Tumor
0.1
483
Tumor
0.1
127
Tumor
0.1
142
Normal
0.1
937
Tumor
0.1
724
Normal
0.1
1032
Normal
0.1
135
Tumor
0.1
861
Tumor
0.1
1025
Tumor
0.1
187
Tumor
0.1
113
Tumor
0.1
977
Tumor
0.1
672
Normal
0.1
124
Normal
0.1
434
Normal
0.1
387
Tumor
0.1
1028
Normal
0.1
1045
Tumor
0.1
498
Normal
0.1
627
Tumor
0.1
222
Normal
0.1
257
Tumor
0.1
536
Normal
0.1
568
Normal
0.1
1044
Normal
0.1
686
Normal
0.1
136
Normal
0.1
1022
Normal
0.1
388
Normal
0.1
415
Tumor
0.1
617
Tumor
0.1
713
Tumor
0.1
965
Tumor
0.1
642
Normal
0.1
491
Tumor
0.1
196
Normal
0.1
267
Tumor
0.1
473
Tumor
0.1
1021
Tumor
0.1
665
Tumor
0.1
351
Tumor
0.1
311
Tumor
0.1
914
Normal
0.1
195
Tumor
0.1
354
Normal
0.1
1027
Tumor
0.1
943
Tumor
0.1
1015
Tumor
0.1
432
Normal
0.1
756
Normal
0.1
951
Tumor
0.1
456
Normal
0.1
727
Tumor
0.1
915
Tumor
0.0
778
Normal
0.0
641
Tumor
0.0
414
Normal
0.0
487
Tumor
0.0
368
Normal
0.0
571
Tumor
0.0
328
Normal
0.0
721
Tumor
0.0
786
Normal
0.0
285
Tumor
0.0
342
Normal
0.0
466
Normal
0.0
386
Normal
0.0
413
Tumor
0.0
352
Normal
0.0
867
Tumor
0.0
186
Normal
0.0
1016
Normal
0.0
298
Normal
0.0
394
Normal
0.0
956
Normal
0.0
416
Normal
0.0
445
Tumor
0.0
564
Normal
0.0
662
Normal
0.0
696
Normal
0.0
873
Tumor
0.0
978
Normal
0.0
815
Tumor
0.0
666
Normal
0.0
714
Normal
0.0
572
Normal
0.0
911
Tumor
0.0
428
Normal
0.0
224
Normal
0.0
533
Tumor
0.0
913
Tumor
0.0
385
Tumor
0.0
557
Tumor
0.0
663
Tumor
0.0
148
Normal
0.0
852
Normal
0.0
628
Normal
0.0
312
Normal
0.0
468
Normal
0.0
362
Normal
0.0
513
Tumor
0.0
366
Normal
0.0
685
Tumor
0.0
488
Normal
0.0
446
Normal
0.0
537
Tumor
0.0
744
Normal
0.0
954
Normal
0.0
396
Normal
0.0
465
Tumor
0.0
722
Normal
0.0
695
Tumor
0.0
1014
Normal
0.0
1026
Normal
0.0
957
Tumor
0.0
376
Normal
0.0
172
Normal
0.0
874
Normal
0.0
868
Normal
0.0
384
Normal
0.0
515
Tumor
0.0
427
Tumor
0.0
212
Normal
0.0
863
Tumor
0.0
716
Normal
0.0
461
Tumor
0.0
474
Normal
-0.1
912
Normal
-0.1
984
Normal
-0.1
982
Normal
-0.1
392
Normal
-0.1
361
Tumor
-0.1
523
Tumor
-0.1
284
Normal
-0.1
648
Normal
-0.1
162
Normal
-0.1
968
Normal
-0.1
698
Normal
-0.1
922
Normal
-0.1
916
Normal
-0.1
426
Normal
-0.1
884
Normal
-0.1
918
Normal
-0.1
484
Normal
-0.1
327
Tumor
-0.1
391
Tumor
-0.1
976
Normal
-0.1
923
Tumor
-0.1
278
Normal
-0.1
364
Normal
-0.1
866
Normal
-0.1
862
Normal
-0.1
554
Normal
-0.1
424
Normal
-0.1
412
Normal
-0.1
546
Normal
-0.1
944
Normal
-0.1
435
Tumor
-0.1
924
Normal
-0.1
356
Normal
-0.1
926
Normal
-0.1
363
Tumor
-0.1
534
Normal
-0.1
494
Normal
-0.1
616
Normal
-0.1
746
Normal
-0.1
161
Tumor
-0.1
448
Normal
-0.1
818
Normal
-0.1
824
Normal
-0.1
955
Tumor
-0.1
981
Tumor
-0.1
472
Normal
-0.1
664
Normal
-0.1
525
Tumor
-0.1
938
Normal
-0.1
816
Normal
-0.1
332
Normal
-0.1
478
Normal
-0.1
858
Normal
-0.1
514
Normal
-0.1
482
Normal
-0.1
741
Tumor
-0.1
742
Normal
-0.1
228
Normal
-0.2
883
Tumor
-0.2
422
Normal
-0.2
723
Tumor
-0.2
952
Normal
-0.2
313
Tumor
-0.2
516
Normal
-0.2
526
Normal
-0.2
393
Tumor
-0.2
882
Normal
-0.2
964
Normal
-0.2
958
Normal
-0.2
358
Normal
-0.2
357
Tumor
-0.2
864
Normal
-0.2
528
Normal
-0.2
314
Normal
-0.2
878
Normal
-0.2
286
Normal
-0.2
518
Normal
-0.2
728
Normal
-0.2
471
Tumor
-0.2
423
Tumor
-0.2
411
Tumor
-0.2
462
Normal
-0.2
481
Tumor
-0.2
953
Tumor
-0.2
477
Tumor
-0.2
925
Tumor
-0.2
227
Tumor
-0.2
355
Tumor
-0.3
851
Tumor
-0.3
738
Normal
-0.3
436
Normal
-0.3
1013
Tumor
-0.3
395
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
