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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLR2I is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
352.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
333.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
231.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
216.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
204.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
197.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
178.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
173.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
154.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
152.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
152.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
151.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
150.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
148.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
145.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
144.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
144.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
143.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
143.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
142.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
141.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
140.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
140.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
137.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
137.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
136.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
133.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
131.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
129.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
125.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
122.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
121.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
119.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
118.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
118.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
117.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
116.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
114.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
113.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
112.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
112.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
111.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
111.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
110.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
110.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
110.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
109.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
108.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
106.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
104.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
103.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
103.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
102.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
102.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
102.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
101.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
99.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
99.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
99.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
98.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
97.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
97.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
97.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
97.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
96.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
96.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
96.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
95.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
95.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
95.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
94.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
94.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
93.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
93.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
92.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
91.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
91.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
90.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
90.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
89.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
88.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
88.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
88.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
88.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
88.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
87.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
87.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
87.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
87.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
87.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
86.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
86.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
86.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
86.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
85.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
84.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
84.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
84.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
84.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
83.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
83.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
83.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
83.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
83.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
82.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
81.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
81.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
81.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
80.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
80.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
80.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
80.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
79.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
79.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
79.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
79.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
78.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
78.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
78.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
78.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
77.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
77.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
77.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
77.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
77.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
77.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
76.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
76.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
76.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
76.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
75.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
75.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
75.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
74.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
74.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
74.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
74.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
74.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
74.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
73.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
72.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
72.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
71.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
71.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
71.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
71.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
71.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
71.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
70.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
70.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
70.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
69.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
69.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
69.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
69.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
68.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
68.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
68.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
68.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
68.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
67.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
67.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
67.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
67.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
67.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
66.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
66.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
66.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
66.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
66.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
65.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
65.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
65.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
65.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
65.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
65.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
65.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
64.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
64.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
64.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
63.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
63.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
62.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
62.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
62.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
62.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
62.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
61.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
61.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
60.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
60.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
60.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
60.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
59.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
59.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
59.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
58.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
58.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
58.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
58.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
57.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
56.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
56.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
56.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
56.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
56.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
56.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
55.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
55.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
55.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
55.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
55.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
55.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
54.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
54.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
54.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
54.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
54.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
53.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
53.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
53.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
53.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
53.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
52.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
52.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
51.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
51.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
51.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
50.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
50.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
50.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
49.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
48.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
48.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
47.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
47.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
47.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
47.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
46.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
46.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
46.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
46.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
45.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
45.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
44.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
43.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
42.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
39.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
37.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
35.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
35.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLR2I is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
85.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
75.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
67.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
57.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
56.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
48.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
39.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
39.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.1
487
Tumor
1.1
865
Tumor
1.0
695
Tumor
1.0
393
Tumor
1.0
497
Tumor
1.0
355
Tumor
0.9
262
Normal
0.8
258
Normal
0.8
411
Tumor
0.8
571
Tumor
0.8
965
Tumor
0.8
285
Tumor
0.7
661
Tumor
0.7
921
Tumor
0.7
268
Normal
0.7
385
Tumor
0.7
232
Normal
0.7
663
Tumor
0.6
743
Tumor
0.6
861
Tumor
0.6
112
Tumor
0.6
483
Tumor
0.6
473
Tumor
0.6
557
Tumor
0.6
186
Normal
0.6
395
Tumor
0.6
272
Normal
0.6
498
Normal
0.6
391
Tumor
0.5
368
Normal
0.5
196
Normal
0.5
647
Tumor
0.5
387
Tumor
0.5
366
Normal
0.5
553
Tumor
0.5
535
Tumor
0.5
492
Normal
0.5
1031
Tumor
0.5
491
Tumor
0.5
431
Tumor
0.5
573
Tumor
0.5
951
Tumor
0.4
227
Tumor
0.4
1043
Tumor
0.4
231
Tumor
0.4
911
Tumor
0.4
574
Normal
0.4
386
Normal
0.4
755
Tumor
0.4
937
Tumor
0.4
493
Tumor
0.4
813
Tumor
0.4
567
Tumor
0.4
878
Normal
0.4
267
Tumor
0.4
123
Tumor
0.4
737
Tumor
0.4
536
Normal
0.4
261
Tumor
0.4
376
Normal
0.4
471
Tumor
0.4
967
Tumor
0.4
746
Normal
0.4
363
Tumor
0.4
975
Tumor
0.4
537
Tumor
0.4
527
Tumor
0.4
957
Tumor
0.4
413
Tumor
0.4
384
Normal
0.4
1025
Tumor
0.3
817
Tumor
0.3
952
Normal
0.3
426
Normal
0.3
785
Tumor
0.3
685
Tumor
0.3
341
Tumor
0.3
697
Tumor
0.3
1041
Tumor
0.3
477
Tumor
0.3
715
Tumor
0.3
1013
Tumor
0.3
554
Normal
0.3
533
Tumor
0.3
135
Tumor
0.3
721
Tumor
0.3
956
Normal
0.3
223
Tumor
0.3
744
Normal
0.3
367
Tumor
0.3
955
Tumor
0.3
222
Normal
0.3
218
Normal
0.3
443
Tumor
0.3
423
Tumor
0.3
925
Tumor
0.3
867
Tumor
0.3
257
Tumor
0.3
545
Tumor
0.3
977
Tumor
0.2
981
Tumor
0.2
662
Normal
0.2
445
Tumor
0.2
126
Normal
0.2
564
Normal
0.2
383
Tumor
0.2
777
Tumor
0.2
915
Tumor
0.2
938
Normal
0.2
488
Normal
0.2
396
Normal
0.2
914
Normal
0.2
137
Tumor
0.2
463
Tumor
0.2
362
Normal
0.2
672
Normal
0.2
823
Tumor
0.2
538
Normal
0.2
873
Tumor
0.2
1026
Normal
0.2
963
Tumor
0.2
572
Normal
0.2
428
Normal
0.2
392
Normal
0.2
113
Tumor
0.2
745
Tumor
0.2
148
Normal
0.2
558
Normal
0.2
414
Normal
0.2
881
Tumor
0.2
141
Tumor
0.2
394
Normal
0.2
365
Tumor
0.2
883
Tumor
0.2
666
Normal
0.2
425
Tumor
0.2
484
Normal
0.2
138
Normal
0.2
917
Tumor
0.2
211
Tumor
0.2
172
Normal
0.2
228
Normal
0.2
214
Normal
0.2
286
Normal
0.2
461
Tumor
0.1
568
Normal
0.1
851
Tumor
0.1
146
Normal
0.1
815
Tumor
0.1
923
Tumor
0.1
271
Tumor
0.1
128
Normal
0.1
283
Tumor
0.1
466
Normal
0.1
467
Tumor
0.1
1021
Tumor
0.1
357
Tumor
0.1
162
Normal
0.1
415
Tumor
0.1
452
Normal
0.1
435
Tumor
0.1
778
Normal
0.1
433
Tumor
0.1
114
Normal
0.1
388
Normal
0.1
224
Normal
0.1
342
Normal
0.1
924
Normal
0.1
1028
Normal
0.1
421
Tumor
0.1
221
Tumor
0.1
1027
Tumor
0.1
142
Normal
0.1
882
Normal
0.1
351
Tumor
0.1
375
Tumor
0.1
412
Normal
0.1
343
Tumor
0.1
136
Normal
0.1
686
Normal
0.1
944
Normal
0.1
188
Normal
0.1
278
Normal
0.1
127
Tumor
0.1
741
Tumor
0.0
284
Normal
0.0
314
Normal
0.0
312
Normal
0.0
344
Normal
0.0
513
Tumor
0.0
465
Tumor
0.0
451
Tumor
0.0
361
Tumor
0.0
352
Normal
0.0
716
Normal
0.0
212
Normal
0.0
714
Normal
0.0
954
Normal
0.0
627
Tumor
0.0
953
Tumor
0.0
546
Normal
0.0
874
Normal
0.0
1014
Normal
0.0
916
Normal
0.0
132
Normal
0.0
358
Normal
0.0
455
Tumor
0.0
866
Normal
0.0
515
Tumor
0.0
332
Normal
0.0
353
Tumor
0.0
195
Tumor
0.0
966
Normal
0.0
665
Tumor
0.0
943
Tumor
0.0
434
Normal
0.0
424
Normal
0.0
446
Normal
0.0
563
Tumor
0.0
436
Normal
0.0
427
Tumor
0.0
1045
Tumor
0.0
416
Normal
0.0
648
Normal
0.0
664
Normal
0.0
671
Tumor
0.0
456
Normal
0.0
617
Tumor
0.0
217
Tumor
0.0
858
Normal
0.0
125
Tumor
-0.1
447
Tumor
-0.1
922
Normal
-0.1
738
Normal
-0.1
298
Normal
-0.1
111
Normal
-0.1
983
Tumor
-0.1
698
Normal
-0.1
696
Normal
-0.1
618
Normal
-0.1
926
Normal
-0.1
354
Normal
-0.1
277
Tumor
-0.1
636
Normal
-0.1
884
Normal
-0.1
364
Normal
-0.1
517
Tumor
-0.1
918
Normal
-0.1
1032
Normal
-0.1
124
Normal
-0.1
1022
Normal
-0.1
213
Tumor
-0.1
191
Tumor
-0.1
628
Normal
-0.1
432
Normal
-0.1
722
Normal
-0.2
523
Tumor
-0.2
472
Normal
-0.2
982
Normal
-0.2
912
Normal
-0.2
468
Normal
-0.2
728
Normal
-0.2
448
Normal
-0.2
494
Normal
-0.2
635
Tumor
-0.2
528
Normal
-0.2
534
Normal
-0.2
481
Tumor
-0.2
877
Tumor
-0.2
444
Normal
-0.2
862
Normal
-0.2
727
Tumor
-0.2
161
Tumor
-0.2
1015
Tumor
-0.2
192
Normal
-0.2
913
Tumor
-0.2
516
Normal
-0.2
723
Tumor
-0.2
1042
Normal
-0.2
297
Tumor
-0.2
464
Normal
-0.2
422
Normal
-0.2
327
Tumor
-0.2
518
Normal
-0.2
615
Tumor
-0.3
857
Tumor
-0.3
478
Normal
-0.3
311
Tumor
-0.3
474
Normal
-0.3
642
Normal
-0.3
525
Tumor
-0.3
816
Normal
-0.3
482
Normal
-0.3
526
Normal
-0.3
976
Normal
-0.3
1046
Normal
-0.3
616
Normal
-0.3
641
Tumor
-0.3
852
Normal
-0.4
1016
Normal
-0.4
356
Normal
-0.4
984
Normal
-0.4
328
Normal
-0.4
964
Normal
-0.4
824
Normal
-0.4
313
Tumor
-0.4
185
Tumor
-0.4
742
Normal
-0.4
331
Tumor
-0.4
1044
Normal
-0.4
462
Normal
-0.4
814
Normal
-0.4
864
Normal
-0.4
145
Tumor
-0.4
171
Tumor
-0.5
786
Normal
-0.5
968
Normal
-0.5
147
Tumor
-0.5
514
Normal
-0.5
524
Normal
-0.5
868
Normal
-0.6
713
Tumor
-0.6
818
Normal
-0.6
958
Normal
-0.6
724
Normal
-0.6
187
Tumor
-0.6
978
Normal
-0.6
756
Normal
-0.8
863
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
