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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.1
Number of samples
231
Samples
Sample
Description
TPM
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
478
Normal
2.2
311
Tumor
2.1
778
Normal
2.0
272
Normal
1.8
536
Normal
1.8
917
Tumor
1.7
328
Normal
1.7
976
Normal
1.7
978
Normal
1.6
916
Normal
1.5
648
Normal
1.5
874
Normal
1.5
713
Tumor
1.5
428
Normal
1.4
447
Tumor
1.4
882
Normal
1.4
1044
Normal
1.3
388
Normal
1.3
714
Normal
1.3
878
Normal
1.3
224
Normal
1.3
491
Tumor
1.2
697
Tumor
1.2
192
Normal
1.2
1016
Normal
1.2
877
Tumor
1.2
196
Normal
1.2
126
Normal
1.1
384
Normal
1.1
1032
Normal
1.1
212
Normal
1.0
466
Normal
1.0
818
Normal
0.9
366
Normal
0.9
938
Normal
0.9
278
Normal
0.9
422
Normal
0.9
823
Tumor
0.9
514
Normal
0.8
444
Normal
0.8
211
Tumor
0.8
1022
Normal
0.8
424
Normal
0.8
862
Normal
0.8
982
Normal
0.8
356
Normal
0.8
662
Normal
0.8
365
Tumor
0.8
494
Normal
0.8
884
Normal
0.7
866
Normal
0.7
162
Normal
0.7
474
Normal
0.7
686
Normal
0.7
924
Normal
0.7
816
Normal
0.7
364
Normal
0.7
498
Normal
0.7
138
Normal
0.6
1046
Normal
0.6
488
Normal
0.6
943
Tumor
0.6
396
Normal
0.6
636
Normal
0.6
671
Tumor
0.6
628
Normal
0.6
462
Normal
0.5
968
Normal
0.5
558
Normal
0.5
824
Normal
0.5
716
Normal
0.5
534
Normal
0.5
484
Normal
0.4
954
Normal
0.4
472
Normal
0.4
964
Normal
0.4
432
Normal
0.4
1042
Normal
0.4
564
Normal
0.4
136
Normal
0.3
672
Normal
0.3
111
Normal
0.3
1014
Normal
0.3
195
Tumor
0.3
482
Normal
0.3
492
Normal
0.3
188
Normal
0.3
926
Normal
0.3
956
Normal
0.3
362
Normal
0.3
944
Normal
0.3
698
Normal
0.3
386
Normal
0.2
354
Normal
0.2
574
Normal
0.2
283
Tumor
0.2
524
Normal
0.2
545
Tumor
0.2
228
Normal
0.2
546
Normal
0.2
376
Normal
0.2
271
Tumor
0.2
114
Normal
0.2
463
Tumor
0.1
858
Normal
0.1
142
Normal
0.1
414
Normal
0.1
538
Normal
0.1
984
Normal
0.1
786
Normal
0.1
312
Normal
0.1
413
Tumor
0.1
481
Tumor
0.1
868
Normal
0.1
756
Normal
0.1
912
Normal
0.1
722
Normal
0.1
172
Normal
0.1
1026
Normal
0.1
148
Normal
0.1
618
Normal
0.1
966
Normal
0.1
146
Normal
0.0
464
Normal
0.0
223
Tumor
0.0
426
Normal
0.0
952
Normal
0.0
817
Tumor
0.0
568
Normal
0.0
232
Normal
0.0
528
Normal
0.0
383
Tumor
-0.1
642
Normal
-0.1
434
Normal
-0.1
526
Normal
-0.1
141
Tumor
-0.1
815
Tumor
-0.1
436
Normal
-0.1
738
Normal
-0.1
918
Normal
-0.2
493
Tumor
-0.2
416
Normal
-0.2
1028
Normal
-0.2
352
Normal
-0.2
852
Normal
-0.2
342
Normal
-0.2
864
Normal
-0.2
742
Normal
-0.2
314
Normal
-0.2
284
Normal
-0.2
446
Normal
-0.2
922
Normal
-0.3
785
Tumor
-0.3
262
Normal
-0.3
268
Normal
-0.3
471
Tumor
-0.3
358
Normal
-0.3
448
Normal
-0.3
468
Normal
-0.3
616
Normal
-0.3
881
Tumor
-0.3
222
Normal
-0.3
186
Normal
-0.3
392
Normal
-0.3
696
Normal
-0.4
723
Tumor
-0.4
914
Normal
-0.4
124
Normal
-0.4
746
Normal
-0.4
572
Normal
-0.4
412
Normal
-0.4
955
Tumor
-0.4
518
Normal
-0.4
563
Tumor
-0.4
695
Tumor
-0.4
161
Tumor
-0.4
467
Tumor
-0.4
391
Tumor
-0.4
421
Tumor
-0.4
214
Normal
-0.4
217
Tumor
-0.4
744
Normal
-0.5
286
Normal
-0.5
368
Normal
-0.5
958
Normal
-0.5
353
Tumor
-0.5
456
Normal
-0.5
554
Normal
-0.5
513
Tumor
-0.5
724
Normal
-0.6
915
Tumor
-0.6
125
Tumor
-0.6
728
Normal
-0.6
185
Tumor
-0.6
213
Tumor
-0.6
516
Normal
-0.6
128
Normal
-0.7
666
Normal
-0.7
132
Normal
-0.7
461
Tumor
-0.7
344
Normal
-0.7
861
Tumor
-0.7
394
Normal
-0.7
298
Normal
-0.7
415
Tumor
-0.8
452
Normal
-0.8
332
Normal
-0.8
277
Tumor
-0.8
814
Normal
-0.9
375
Tumor
-0.9
343
Tumor
-0.9
813
Tumor
-0.9
187
Tumor
-0.9
1043
Tumor
-0.9
923
Tumor
-0.9
227
Tumor
-0.9
327
Tumor
-0.9
355
Tumor
-0.9
661
Tumor
-0.9
721
Tumor
-0.9
963
Tumor
-0.9
857
Tumor
-0.9
483
Tumor
-1.0
497
Tumor
-1.0
261
Tumor
-1.0
883
Tumor
-1.0
477
Tumor
-1.1
171
Tumor
-1.1
258
Normal
-1.1
443
Tumor
-1.1
218
Normal
-1.1
573
Tumor
-1.1
517
Tumor
-1.1
1045
Tumor
-1.1
665
Tumor
-1.1
423
Tumor
-1.1
395
Tumor
-1.1
191
Tumor
-1.1
664
Normal
-1.2
465
Tumor
-1.2
487
Tumor
-1.2
297
Tumor
-1.2
685
Tumor
-1.2
331
Tumor
-1.2
553
Tumor
-1.2
455
Tumor
-1.3
525
Tumor
-1.3
873
Tumor
-1.3
351
Tumor
-1.3
473
Tumor
-1.3
145
Tumor
-1.3
537
Tumor
-1.3
867
Tumor
-1.4
617
Tumor
-1.4
341
Tumor
-1.4
425
Tumor
-1.4
515
Tumor
-1.4
363
Tumor
-1.5
957
Tumor
-1.5
427
Tumor
-1.5
257
Tumor
-1.5
975
Tumor
-1.5
715
Tumor
-1.5
387
Tumor
-1.5
361
Tumor
-1.5
615
Tumor
-1.5
737
Tumor
-1.6
433
Tumor
-1.6
527
Tumor
-1.6
385
Tumor
-1.6
113
Tumor
-1.7
647
Tumor
-1.7
523
Tumor
-1.7
147
Tumor
-1.7
221
Tumor
-1.7
627
Tumor
-1.7
983
Tumor
-1.7
313
Tumor
-1.7
1025
Tumor
-1.7
911
Tumor
-1.7
925
Tumor
-1.7
285
Tumor
-1.8
533
Tumor
-1.8
981
Tumor
-1.8
913
Tumor
-1.8
267
Tumor
-1.8
1041
Tumor
-1.8
137
Tumor
-1.8
127
Tumor
-1.9
921
Tumor
-1.9
777
Tumor
-1.9
977
Tumor
-1.9
567
Tumor
-1.9
367
Tumor
-2.0
1021
Tumor
-2.0
535
Tumor
-2.0
571
Tumor
-2.0
231
Tumor
-2.0
1015
Tumor
-2.0
431
Tumor
-2.1
451
Tumor
-2.1
1031
Tumor
-2.1
851
Tumor
-2.1
937
Tumor
-2.1
743
Tumor
-2.1
967
Tumor
-2.1
1027
Tumor
-2.1
863
Tumor
-2.1
112
Tumor
-2.1
865
Tumor
-2.1
435
Tumor
-2.2
641
Tumor
-2.2
557
Tumor
-2.2
123
Tumor
-2.3
411
Tumor
-2.4
1013
Tumor
-2.4
635
Tumor
-2.4
755
Tumor
-2.5
135
Tumor
-2.5
663
Tumor
-2.5
965
Tumor
-2.6
727
Tumor
-2.6
445
Tumor
-2.7
953
Tumor
-2.7
131
Tumor
-2.9
393
Tumor
-2.9
741
Tumor
-2.9
745
Tumor
-3.0
357
Tumor
-3.1
951
Tumor
-3.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
