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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM50 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
276.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
172.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
166.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
143.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
135.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
129.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
125.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
124.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
121.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
120.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
118.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
116.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
116.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
114.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
112.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
112.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
108.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
108.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
105.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
102.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
102.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
101.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
100.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
97.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
97.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
96.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
95.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
93.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
93.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
91.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
90.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
89.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
88.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
88.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
88.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
86.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
86.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
86.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
84.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
83.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
81.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
81.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
80.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
79.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
78.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
77.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
77.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
76.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
76.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
75.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
74.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
73.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
73.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
71.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
71.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
71.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
70.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
70.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
70.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
69.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
68.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
68.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
68.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
67.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
67.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
67.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
66.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
66.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
66.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
65.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
65.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
65.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
64.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
64.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
64.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
63.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
63.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
63.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
63.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
63.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
62.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
62.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
61.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
61.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
60.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
60.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
60.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
60.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
60.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
59.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
59.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
59.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
58.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
58.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
58.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
58.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
58.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
58.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
57.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
57.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
57.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
56.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
56.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
55.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
54.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
54.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
53.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
53.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
53.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
53.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
52.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
51.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
51.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
51.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
51.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
50.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
50.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
50.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
49.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
49.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
49.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
49.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
47.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
46.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
46.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
46.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
45.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
45.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
45.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
44.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
43.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
43.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
42.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
42.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
42.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
40.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
40.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
39.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
39.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
38.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
38.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
37.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
36.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM50 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
34.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.8
341
Tumor
1.7
571
Tumor
1.5
745
Tumor
1.4
443
Tumor
1.4
567
Tumor
1.4
635
Tumor
1.3
231
Tumor
1.1
477
Tumor
1.1
627
Tumor
1.0
925
Tumor
1.0
463
Tumor
0.9
425
Tumor
0.9
537
Tumor
0.9
1027
Tumor
0.8
112
Tumor
0.8
393
Tumor
0.7
435
Tumor
0.7
465
Tumor
0.7
123
Tumor
0.7
785
Tumor
0.7
421
Tumor
0.7
921
Tumor
0.7
671
Tumor
0.7
517
Tumor
0.6
221
Tumor
0.6
267
Tumor
0.6
127
Tumor
0.6
755
Tumor
0.6
937
Tumor
0.6
473
Tumor
0.6
1041
Tumor
0.6
483
Tumor
0.6
873
Tumor
0.5
1045
Tumor
0.5
737
Tumor
0.5
361
Tumor
0.5
1031
Tumor
0.5
387
Tumor
0.5
915
Tumor
0.5
641
Tumor
0.5
865
Tumor
0.5
967
Tumor
0.5
1013
Tumor
0.5
363
Tumor
0.4
1015
Tumor
0.4
685
Tumor
0.4
513
Tumor
0.4
963
Tumor
0.4
647
Tumor
0.4
615
Tumor
0.4
297
Tumor
0.4
911
Tumor
0.4
411
Tumor
0.4
171
Tumor
0.4
1043
Tumor
0.4
951
Tumor
0.4
355
Tumor
0.4
285
Tumor
0.4
391
Tumor
0.4
271
Tumor
0.4
451
Tumor
0.4
665
Tumor
0.3
365
Tumor
0.3
1025
Tumor
0.3
573
Tumor
0.3
257
Tumor
0.3
433
Tumor
0.3
815
Tumor
0.3
423
Tumor
0.3
445
Tumor
0.3
525
Tumor
0.3
983
Tumor
0.3
867
Tumor
0.3
965
Tumor
0.3
515
Tumor
0.3
357
Tumor
0.3
223
Tumor
0.3
1021
Tumor
0.3
145
Tumor
0.2
557
Tumor
0.2
367
Tumor
0.2
981
Tumor
0.2
861
Tumor
0.2
185
Tumor
0.2
455
Tumor
0.2
227
Tumor
0.2
481
Tumor
0.2
141
Tumor
0.2
883
Tumor
0.2
431
Tumor
0.2
353
Tumor
0.2
661
Tumor
0.2
553
Tumor
0.2
147
Tumor
0.2
975
Tumor
0.2
533
Tumor
0.1
697
Tumor
0.1
923
Tumor
0.1
563
Tumor
0.1
125
Tumor
0.1
395
Tumor
0.1
497
Tumor
0.1
277
Tumor
0.1
913
Tumor
0.1
851
Tumor
0.1
491
Tumor
0.1
957
Tumor
0.1
461
Tumor
0.1
977
Tumor
0.1
187
Tumor
0.1
953
Tumor
0.1
741
Tumor
0.1
137
Tumor
0.1
1046
Normal
0.1
777
Tumor
0.1
695
Tumor
0.1
213
Tumor
0.1
385
Tumor
0.1
135
Tumor
0.1
526
Normal
0.0
823
Tumor
0.0
715
Tumor
0.0
493
Tumor
0.0
484
Normal
0.0
436
Normal
0.0
161
Tumor
0.0
955
Tumor
0.0
922
Normal
0.0
427
Tumor
0.0
523
Tumor
0.0
471
Tumor
-0.1
415
Tumor
-0.1
663
Tumor
-0.1
494
Normal
-0.1
535
Tumor
-0.1
482
Normal
-0.1
331
Tumor
-0.1
131
Tumor
-0.1
868
Normal
-0.1
564
Normal
-0.1
727
Tumor
-0.1
413
Tumor
-0.1
452
Normal
-0.1
817
Tumor
-0.1
261
Tumor
-0.1
863
Tumor
-0.1
488
Normal
-0.1
327
Tumor
-0.1
648
Normal
-0.1
217
Tumor
-0.1
448
Normal
-0.1
534
Normal
-0.1
527
Tumor
-0.1
113
Tumor
-0.1
568
Normal
-0.2
446
Normal
-0.2
383
Tumor
-0.2
545
Tumor
-0.2
881
Tumor
-0.2
743
Tumor
-0.2
412
Normal
-0.2
786
Normal
-0.2
857
Tumor
-0.2
636
Normal
-0.2
944
Normal
-0.2
524
Normal
-0.2
721
Tumor
-0.2
428
Normal
-0.2
572
Normal
-0.2
492
Normal
-0.2
432
Normal
-0.2
313
Tumor
-0.2
142
Normal
-0.2
1044
Normal
-0.2
713
Tumor
-0.2
546
Normal
-0.2
926
Normal
-0.2
924
Normal
-0.2
462
Normal
-0.2
554
Normal
-0.2
392
Normal
-0.2
191
Tumor
-0.2
616
Normal
-0.2
356
Normal
-0.2
464
Normal
-0.2
328
Normal
-0.2
394
Normal
-0.2
132
Normal
-0.2
128
Normal
-0.2
914
Normal
-0.2
698
Normal
-0.3
618
Normal
-0.3
724
Normal
-0.3
938
Normal
-0.3
478
Normal
-0.3
1032
Normal
-0.3
874
Normal
-0.3
388
Normal
-0.3
518
Normal
-0.3
558
Normal
-0.3
148
Normal
-0.3
222
Normal
-0.3
138
Normal
-0.3
628
Normal
-0.3
426
Normal
-0.3
617
Tumor
-0.3
444
Normal
-0.3
964
Normal
-0.3
212
Normal
-0.3
746
Normal
-0.3
516
Normal
-0.3
278
Normal
-0.3
864
Normal
-0.3
884
Normal
-0.3
664
Normal
-0.3
211
Tumor
-0.3
943
Tumor
-0.3
416
Normal
-0.3
172
Normal
-0.3
111
Normal
-0.3
162
Normal
-0.3
195
Tumor
-0.3
351
Tumor
-0.3
858
Normal
-0.3
136
Normal
-0.3
368
Normal
-0.3
978
Normal
-0.3
954
Normal
-0.3
466
Normal
-0.3
514
Normal
-0.3
536
Normal
-0.3
528
Normal
-0.3
124
Normal
-0.3
918
Normal
-0.3
474
Normal
-0.3
952
Normal
-0.3
738
Normal
-0.3
642
Normal
-0.3
916
Normal
-0.3
422
Normal
-0.3
424
Normal
-0.3
447
Tumor
-0.3
666
Normal
-0.3
1014
Normal
-0.3
375
Tumor
-0.3
723
Tumor
-0.3
912
Normal
-0.3
1028
Normal
-0.3
434
Normal
-0.3
232
Normal
-0.3
778
Normal
-0.3
472
Normal
-0.3
862
Normal
-0.3
258
Normal
-0.3
344
Normal
-0.3
1026
Normal
-0.3
186
Normal
-0.3
342
Normal
-0.4
824
Normal
-0.4
468
Normal
-0.4
813
Tumor
-0.4
878
Normal
-0.4
866
Normal
-0.4
386
Normal
-0.4
538
Normal
-0.4
1016
Normal
-0.4
742
Normal
-0.4
196
Normal
-0.4
956
Normal
-0.4
574
Normal
-0.4
364
Normal
-0.4
984
Normal
-0.4
414
Normal
-0.4
376
Normal
-0.4
362
Normal
-0.4
982
Normal
-0.4
114
Normal
-0.4
188
Normal
-0.4
311
Tumor
-0.4
852
Normal
-0.4
272
Normal
-0.4
976
Normal
-0.4
756
Normal
-0.4
686
Normal
-0.4
286
Normal
-0.4
498
Normal
-0.4
314
Normal
-0.4
214
Normal
-0.4
218
Normal
-0.4
262
Normal
-0.4
882
Normal
-0.4
384
Normal
-0.4
744
Normal
-0.4
728
Normal
-0.4
958
Normal
-0.4
662
Normal
-0.4
1042
Normal
-0.4
298
Normal
-0.4
696
Normal
-0.4
146
Normal
-0.4
284
Normal
-0.5
126
Normal
-0.5
818
Normal
-0.5
396
Normal
-0.5
312
Normal
-0.5
268
Normal
-0.5
966
Normal
-0.5
714
Normal
-0.5
358
Normal
-0.5
228
Normal
-0.5
467
Tumor
-0.5
283
Tumor
-0.5
354
Normal
-0.5
1022
Normal
-0.5
672
Normal
-0.5
332
Normal
-0.5
224
Normal
-0.5
352
Normal
-0.5
366
Normal
-0.5
816
Normal
-0.5
877
Tumor
-0.5
456
Normal
-0.5
343
Tumor
-0.6
968
Normal
-0.6
716
Normal
-0.6
722
Normal
-0.6
917
Tumor
-0.6
814
Normal
-0.7
192
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
