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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ILVBL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
756.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
130.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
122.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
119.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
117.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
105.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
102.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
97.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
96.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
95.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
93.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
91.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
88.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
87.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
84.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
84.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
79.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
79.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
77.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
75.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
74.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
72.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
71.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
71.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
70.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
70.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
70.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
70.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
69.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
69.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
67.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
66.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
66.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
66.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
65.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
65.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
64.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
63.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
63.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
62.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
62.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
60.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
58.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
58.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
57.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
56.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
56.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
56.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
55.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
55.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
54.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
54.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
53.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
51.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
51.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
50.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
50.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
49.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
47.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
47.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
47.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
47.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
47.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
47.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
46.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
46.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
45.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
44.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
44.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
44.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
43.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
42.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
42.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
41.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
41.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
41.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
40.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
39.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
39.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
39.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
37.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
32.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ILVBL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
231
Samples
Sample
Description
TPM
DO45281
0 years, male, NA, stage:4, alive, 750 days
129.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
59.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
45.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
40.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
39.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
38.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.5
745
Tumor
1.0
571
Tumor
1.0
452
Normal
0.9
128
Normal
0.8
314
Normal
0.8
342
Normal
0.8
358
Normal
0.8
636
Normal
0.8
278
Normal
0.8
426
Normal
0.7
354
Normal
0.7
388
Normal
0.7
172
Normal
0.7
332
Normal
0.6
914
Normal
0.6
618
Normal
0.6
742
Normal
0.6
376
Normal
0.6
648
Normal
0.6
111
Normal
0.6
445
Tumor
0.6
258
Normal
0.6
568
Normal
0.6
698
Normal
0.6
746
Normal
0.6
298
Normal
0.6
862
Normal
0.6
466
Normal
0.6
616
Normal
0.6
422
Normal
0.6
222
Normal
0.5
162
Normal
0.5
132
Normal
0.5
196
Normal
0.5
464
Normal
0.5
446
Normal
0.5
148
Normal
0.5
744
Normal
0.5
366
Normal
0.5
615
Tumor
0.5
362
Normal
0.5
864
Normal
0.5
414
Normal
0.5
1022
Normal
0.5
738
Normal
0.5
564
Normal
0.5
456
Normal
0.5
866
Normal
0.5
435
Tumor
0.5
214
Normal
0.4
114
Normal
0.4
878
Normal
0.4
186
Normal
0.4
824
Normal
0.4
356
Normal
0.4
344
Normal
0.4
572
Normal
0.4
428
Normal
0.4
352
Normal
0.4
727
Tumor
0.4
952
Normal
0.4
1026
Normal
0.4
484
Normal
0.4
786
Normal
0.4
662
Normal
0.4
462
Normal
0.4
1044
Normal
0.4
816
Normal
0.4
424
Normal
0.4
868
Normal
0.4
227
Tumor
0.3
277
Tumor
0.3
722
Normal
0.3
138
Normal
0.3
664
Normal
0.3
818
Normal
0.3
1032
Normal
0.3
436
Normal
0.3
412
Normal
0.3
642
Normal
0.3
396
Normal
0.3
743
Tumor
0.3
312
Normal
0.3
534
Normal
0.3
432
Normal
0.3
922
Normal
0.3
368
Normal
0.3
982
Normal
0.3
272
Normal
0.3
494
Normal
0.3
976
Normal
0.3
188
Normal
0.3
574
Normal
0.3
938
Normal
0.3
723
Tumor
0.3
874
Normal
0.3
136
Normal
0.3
944
Normal
0.3
728
Normal
0.3
448
Normal
0.3
364
Normal
0.3
554
Normal
0.2
488
Normal
0.2
126
Normal
0.2
124
Normal
0.2
482
Normal
0.2
1016
Normal
0.2
857
Tumor
0.2
1046
Normal
0.2
628
Normal
0.2
147
Tumor
0.2
956
Normal
0.2
912
Normal
0.2
228
Normal
0.2
384
Normal
0.2
1014
Normal
0.2
353
Tumor
0.2
392
Normal
0.2
924
Normal
0.2
672
Normal
0.2
714
Normal
0.2
858
Normal
0.2
286
Normal
0.2
696
Normal
0.2
666
Normal
0.2
518
Normal
0.2
778
Normal
0.2
142
Normal
0.2
146
Normal
0.2
526
Normal
0.2
268
Normal
0.2
716
Normal
0.2
852
Normal
0.2
741
Tumor
0.2
884
Normal
0.2
472
Normal
0.2
755
Tumor
0.2
882
Normal
0.2
394
Normal
0.1
416
Normal
0.1
955
Tumor
0.1
516
Normal
0.1
262
Normal
0.1
968
Normal
0.1
1028
Normal
0.1
434
Normal
0.1
954
Normal
0.1
261
Tumor
0.1
756
Normal
0.1
984
Normal
0.1
686
Normal
0.1
391
Tumor
0.1
212
Normal
0.1
171
Tumor
0.1
284
Normal
0.1
863
Tumor
0.1
361
Tumor
0.1
981
Tumor
0.1
964
Normal
0.1
444
Normal
0.1
528
Normal
0.1
357
Tumor
0.1
145
Tumor
0.1
328
Normal
0.1
815
Tumor
0.0
926
Normal
0.0
873
Tumor
0.0
963
Tumor
0.0
966
Normal
0.0
218
Normal
0.0
958
Normal
0.0
911
Tumor
0.0
978
Normal
0.0
123
Tumor
0.0
713
Tumor
0.0
468
Normal
0.0
481
Tumor
0.0
1043
Tumor
0.0
558
Normal
0.0
923
Tumor
0.0
363
Tumor
0.0
697
Tumor
0.0
918
Normal
-0.1
232
Normal
-0.1
1042
Normal
-0.1
195
Tumor
-0.1
851
Tumor
-0.1
867
Tumor
-0.1
785
Tumor
-0.1
915
Tumor
-0.1
1045
Tumor
-0.1
187
Tumor
-0.1
386
Normal
-0.1
463
Tumor
-0.1
474
Normal
-0.1
192
Normal
-0.1
514
Normal
-0.1
715
Tumor
-0.1
983
Tumor
-0.1
423
Tumor
-0.1
413
Tumor
-0.1
491
Tumor
-0.1
567
Tumor
-0.1
365
Tumor
-0.1
916
Normal
-0.1
221
Tumor
-0.1
721
Tumor
-0.2
492
Normal
-0.2
538
Normal
-0.2
431
Tumor
-0.2
617
Tumor
-0.2
546
Normal
-0.2
1015
Tumor
-0.2
877
Tumor
-0.2
461
Tumor
-0.2
813
Tumor
-0.2
695
Tumor
-0.2
627
Tumor
-0.2
665
Tumor
-0.2
465
Tumor
-0.2
641
Tumor
-0.2
351
Tumor
-0.2
271
Tumor
-0.2
125
Tumor
-0.2
393
Tumor
-0.2
1013
Tumor
-0.2
113
Tumor
-0.2
498
Normal
-0.2
478
Normal
-0.2
224
Normal
-0.2
977
Tumor
-0.3
411
Tumor
-0.3
217
Tumor
-0.3
563
Tumor
-0.3
137
Tumor
-0.3
127
Tumor
-0.3
331
Tumor
-0.3
433
Tumor
-0.3
553
Tumor
-0.3
267
Tumor
-0.3
451
Tumor
-0.3
313
Tumor
-0.3
685
Tumor
-0.3
777
Tumor
-0.3
524
Normal
-0.3
861
Tumor
-0.4
447
Tumor
-0.4
1027
Tumor
-0.4
537
Tumor
-0.4
557
Tumor
-0.4
724
Normal
-0.4
527
Tumor
-0.4
814
Normal
-0.4
921
Tumor
-0.4
737
Tumor
-0.4
355
Tumor
-0.4
297
Tumor
-0.4
285
Tumor
-0.4
1025
Tumor
-0.4
341
Tumor
-0.4
515
Tumor
-0.5
327
Tumor
-0.5
415
Tumor
-0.5
943
Tumor
-0.5
343
Tumor
-0.5
663
Tumor
-0.5
421
Tumor
-0.5
493
Tumor
-0.5
387
Tumor
-0.5
951
Tumor
-0.5
375
Tumor
-0.5
223
Tumor
-0.5
257
Tumor
-0.5
191
Tumor
-0.5
185
Tumor
-0.5
525
Tumor
-0.5
817
Tumor
-0.5
395
Tumor
-0.5
823
Tumor
-0.5
865
Tumor
-0.5
635
Tumor
-0.5
443
Tumor
-0.5
135
Tumor
-0.6
975
Tumor
-0.6
513
Tumor
-0.6
913
Tumor
-0.6
881
Tumor
-0.6
1031
Tumor
-0.6
131
Tumor
-0.6
953
Tumor
-0.6
523
Tumor
-0.6
647
Tumor
-0.6
311
Tumor
-0.6
112
Tumor
-0.6
161
Tumor
-0.7
536
Normal
-0.7
141
Tumor
-0.7
467
Tumor
-0.7
965
Tumor
-0.7
471
Tumor
-0.7
533
Tumor
-0.7
517
Tumor
-0.7
213
Tumor
-0.7
883
Tumor
-0.7
917
Tumor
-0.8
427
Tumor
-0.8
483
Tumor
-0.8
455
Tumor
-0.8
367
Tumor
-0.9
937
Tumor
-0.9
671
Tumor
-0.9
383
Tumor
-0.9
477
Tumor
-0.9
1041
Tumor
-0.9
385
Tumor
-0.9
283
Tumor
-1.0
231
Tumor
-1.0
661
Tumor
-1.0
573
Tumor
-1.0
957
Tumor
-1.1
425
Tumor
-1.1
497
Tumor
-1.1
473
Tumor
-1.1
1021
Tumor
-1.1
487
Tumor
-1.3
925
Tumor
-1.3
211
Tumor
-1.3
535
Tumor
-1.3
545
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
