MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:37.1 nTPM
GTEx:23.0 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:24.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.5
2019 Male, age 18, unknown 42.5
2586 Male, age 75, left hemisphere 41.6
2411 Female, age 72, unknown 38.5
2828 Female, age 72, unknown 36.6
1827 Male, age 72, unknown 33.4
1830 Male, age 51, unknown 32.6
1870 Female, age 42, unknown 32.5
1833 Male, age 53, unknown 30.4
2666 Male, age 74, left hemisphere 30.3
2219 Male, age 76, both hemispheres 26.5
Dorsal raphe nucleus
nTPM: 33.7
2298 Female, age 72, unknown 40.5
2750 Male, age 76, both hemispheres 34.7
1828 Male, age 53, unknown 32.6
2016 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 28.5
Inferior colliculus
nTPM: 29.4
2097 Female, age 72, unknown 35.6
1890 Male, age 53, unknown 32.3
1848 Female, age 42, unknown 27.6
2849 Male, age 72, unknown 22.0
Median raphe nucleus
nTPM: 29.1
2220 Male, age 76, midline 29.1
Periaquaductal grey, anterior
nTPM: 31.5
2502 Female, age 75, unknown 34.3
1795 Male, age 51, unknown 31.8
1947 Male, age 18, unknown 28.4
Periaquaductal grey, dorsal
nTPM: 24.0
1831 Male, age 72, unknown 28.9
2464 Female, age 72, unknown 26.7
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 19.0
Periaquaductal grey, lateral
nTPM: 28.5
2272 Male, age 74, both hemispheres 33.0
2053 Male, age 18, unknown 28.8
2140 Male, age 76, both hemispheres 23.6
Pretectal area
nTPM: 33.2
2007 Male, age 72, unknown 36.9
1817 Female, age 42, unknown 35.8
2273 Male, age 74, both hemispheres 35.7
1815 Male, age 53, unknown 34.8
2667 Female, age 75, unknown 33.8
2316 Male, age 76, right hemisphere 33.1
1816 Male, age 51, unknown 32.9
1944 Female, age 72, unknown 31.9
2224 Female, age 72, unknown 31.2
2825 Male, age 18, unknown 30.1
2407 Male, age 75, both hemispheres 29.2
Red nucleus
nTPM: 37.1
2503 Female, age 72, unknown 42.5
1904 Male, age 53, unknown 42.3
2769 Male, age 72, unknown 39.4
2588 Male, age 74, left hemisphere 38.4
1821 Female, age 72, unknown 38.1
2227 Male, age 72, unknown 38.0
2785 Male, age 18, unknown 37.7
1865 Male, age 51, unknown 36.1
1954 Female, age 42, unknown 35.7
2823 Male, age 76, right hemisphere 34.3
2725 Female, age 75, unknown 31.5
2584 Male, age 75, left hemisphere 30.8
Substantia nigra
nTPM: 29.4
1889 Female, age 72, unknown 34.0
1851 Male, age 51, unknown 33.2
2583 Male, age 75, right hemisphere 32.7
1916 Female, age 42, unknown 32.2
2590 Female, age 75, unknown 28.8
2241 Male, age 72, unknown 28.0
2699 Male, age 18, unknown 27.3
1941 Male, age 53, unknown 26.9
2665 Male, age 74, both hemispheres 25.8
2409 Female, age 72, unknown 25.1
Superior colliculus
nTPM: 31.9
1913 Female, age 42, unknown 38.1
1995 Male, age 72, unknown 34.9
1796 Male, age 53, unknown 33.8
2668 Female, age 75, unknown 33.8
2261 Male, age 18, unknown 31.8
2087 Female, age 72, unknown 30.0
2587 Male, age 74, left hemisphere 29.8
2664 Male, age 75, both hemispheres 29.3
1839 Male, age 51, unknown 28.5
1895 Male, age 76, right hemisphere 28.4
Ventral tegmental area
nTPM: 30.2
2410 Female, age 72, unknown 32.9
1942 Male, age 51, unknown 31.4
2223 Female, age 72, unknown 31.4
1915 Female, age 42, unknown 29.6
2021 Male, age 53, unknown 29.2
2218 Male, age 76, both hemispheres 26.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 50.5
Min nTPM: 14.1
Std nTPM: 5.1
Median nTPM: 22.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 31.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 31.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 31.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 30.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.9
FF:10158-103A5 76 years, female 19.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 18.7
Sample A Female 20.0
Sample B Female 18.7
Sample C Male 19.5
Sample D Male 18.7
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 23.6
Min nTPM: 15.4
Sample A Female 23.6
Sample B Female 16.2
Sample C Male 17.1
Sample D Male 15.4
Periaqueductal gray
nTPM: 18.4
Samples: 3

Max nTPM: 19.9
Min nTPM: 16.4
Sample B Female 18.8
Sample C Male 19.9
Sample D Male 16.4
Superior colliculi
nTPM: 19.3
Samples: 4

Max nTPM: 24.4
Min nTPM: 16.8
Sample A Female 18.8
Sample B Female 24.4
Sample C Male 17.1
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 29.0
Min nTPM: 22.2
Sample A Male 29.0
Sample B Male 24.2
Sample C Female 22.2
Sample D Female 23.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68844229 Antisense, RP_050222_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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