We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP6R1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
70.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
65.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
65.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
64.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
63.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
62.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
55.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
46.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
44.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP6R1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
61.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
58.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
48.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
47.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.1
125
Tumor
0.7
661
Tumor
0.7
1025
Tumor
0.7
967
Tumor
0.7
951
Tumor
0.5
311
Tumor
0.5
517
Tumor
0.5
211
Tumor
0.5
537
Tumor
0.5
917
Tumor
0.5
851
Tumor
0.5
963
Tumor
0.5
745
Tumor
0.5
147
Tumor
0.5
1043
Tumor
0.5
724
Normal
0.5
921
Tumor
0.5
283
Tumor
0.5
213
Tumor
0.4
817
Tumor
0.4
1013
Tumor
0.4
965
Tumor
0.4
277
Tumor
0.4
975
Tumor
0.4
375
Tumor
0.4
126
Normal
0.4
433
Tumor
0.4
231
Tumor
0.4
341
Tumor
0.4
865
Tumor
0.4
425
Tumor
0.4
535
Tumor
0.3
536
Normal
0.3
467
Tumor
0.3
857
Tumor
0.3
573
Tumor
0.3
385
Tumor
0.3
434
Normal
0.3
257
Tumor
0.3
285
Tumor
0.3
395
Tumor
0.3
188
Normal
0.3
957
Tumor
0.3
353
Tumor
0.3
262
Normal
0.3
697
Tumor
0.3
943
Tumor
0.3
217
Tumor
0.3
471
Tumor
0.3
383
Tumor
0.3
192
Normal
0.3
313
Tumor
0.3
272
Normal
0.3
386
Normal
0.3
127
Tumor
0.2
823
Tumor
0.2
491
Tumor
0.2
444
Normal
0.2
343
Tumor
0.2
393
Tumor
0.2
641
Tumor
0.2
1031
Tumor
0.2
881
Tumor
0.2
271
Tumor
0.2
195
Tumor
0.2
365
Tumor
0.2
877
Tumor
0.2
297
Tumor
0.2
161
Tumor
0.2
421
Tumor
0.2
391
Tumor
0.2
362
Normal
0.2
695
Tumor
0.2
814
Normal
0.2
455
Tumor
0.2
366
Normal
0.2
663
Tumor
0.2
268
Normal
0.2
727
Tumor
0.2
524
Normal
0.2
447
Tumor
0.2
478
Normal
0.2
367
Tumor
0.2
267
Tumor
0.2
755
Tumor
0.2
813
Tumor
0.2
445
Tumor
0.2
384
Normal
0.2
863
Tumor
0.2
138
Normal
0.1
553
Tumor
0.1
492
Normal
0.1
861
Tumor
0.1
571
Tumor
0.1
332
Normal
0.1
558
Normal
0.1
737
Tumor
0.1
525
Tumor
0.1
351
Tumor
0.1
145
Tumor
0.1
978
Normal
0.1
523
Tumor
0.1
966
Normal
0.1
713
Tumor
0.1
983
Tumor
0.1
141
Tumor
0.1
123
Tumor
0.1
224
Normal
0.1
477
Tumor
0.1
1015
Tumor
0.1
146
Normal
0.1
113
Tumor
0.1
185
Tumor
0.1
344
Normal
0.1
498
Normal
0.1
227
Tumor
0.1
258
Normal
0.1
642
Normal
0.1
396
Normal
0.1
312
Normal
0.1
427
Tumor
0.1
662
Normal
0.1
617
Tumor
0.1
357
Tumor
0.1
114
Normal
0.1
785
Tumor
0.1
563
Tumor
0.1
411
Tumor
0.1
468
Normal
0.1
435
Tumor
0.1
666
Normal
0.1
191
Tumor
0.0
187
Tumor
0.0
212
Normal
0.0
331
Tumor
0.0
916
Normal
0.0
574
Normal
0.0
628
Normal
0.0
557
Tumor
0.0
497
Tumor
0.0
136
Normal
0.0
361
Tumor
0.0
278
Normal
0.0
461
Tumor
0.0
432
Normal
0.0
342
Normal
0.0
884
Normal
0.0
852
Normal
0.0
635
Tumor
0.0
392
Normal
0.0
368
Normal
0.0
816
Normal
0.0
926
Normal
0.0
415
Tumor
0.0
815
Tumor
0.0
671
Tumor
0.0
952
Normal
0.0
388
Normal
0.0
232
Normal
0.0
1045
Tumor
0.0
358
Normal
0.0
124
Normal
0.0
218
Normal
0.0
456
Normal
0.0
223
Tumor
0.0
394
Normal
0.0
463
Tumor
0.0
284
Normal
0.0
387
Tumor
0.0
516
Normal
0.0
777
Tumor
0.0
214
Normal
0.0
221
Tumor
0.0
416
Normal
0.0
528
Normal
0.0
912
Normal
0.0
515
Tumor
0.0
538
Normal
0.0
352
Normal
0.0
756
Normal
0.0
354
Normal
0.0
446
Normal
0.0
494
Normal
0.0
568
Normal
0.0
956
Normal
0.0
186
Normal
0.0
1042
Normal
0.0
364
Normal
0.0
355
Tumor
0.0
162
Normal
0.0
298
Normal
0.0
488
Normal
0.0
135
Tumor
0.0
818
Normal
-0.1
874
Normal
-0.1
564
Normal
-0.1
131
Tumor
-0.1
672
Normal
-0.1
111
Normal
-0.1
483
Tumor
-0.1
954
Normal
-0.1
913
Tumor
-0.1
472
Normal
-0.1
944
Normal
-0.1
228
Normal
-0.1
914
Normal
-0.1
436
Normal
-0.1
572
Normal
-0.1
314
Normal
-0.1
286
Normal
-0.1
953
Tumor
-0.1
328
Normal
-0.1
493
Tumor
-0.1
647
Tumor
-0.1
474
Normal
-0.1
883
Tumor
-0.1
142
Normal
-0.1
918
Normal
-0.1
858
Normal
-0.1
172
Normal
-0.1
518
Normal
-0.1
1021
Tumor
-0.1
327
Tumor
-0.1
412
Normal
-0.1
137
Tumor
-0.1
981
Tumor
-0.1
513
Tumor
-0.1
481
Tumor
-0.1
413
Tumor
-0.1
664
Normal
-0.1
1044
Normal
-0.1
864
Normal
-0.1
484
Normal
-0.1
196
Normal
-0.1
546
Normal
-0.1
721
Tumor
-0.1
261
Tumor
-0.1
376
Normal
-0.1
132
Normal
-0.1
882
Normal
-0.1
924
Normal
-0.1
686
Normal
-0.1
615
Tumor
-0.1
451
Tumor
-0.1
356
Normal
-0.1
728
Normal
-0.1
744
Normal
-0.1
923
Tumor
-0.1
627
Tumor
-0.1
868
Normal
-0.1
976
Normal
-0.1
514
Normal
-0.1
984
Normal
-0.1
742
Normal
-0.1
636
Normal
-0.1
1016
Normal
-0.1
464
Normal
-0.2
128
Normal
-0.2
148
Normal
-0.2
716
Normal
-0.2
545
Tumor
-0.2
222
Normal
-0.2
482
Normal
-0.2
958
Normal
-0.2
786
Normal
-0.2
648
Normal
-0.2
171
Tumor
-0.2
778
Normal
-0.2
1028
Normal
-0.2
922
Normal
-0.2
738
Normal
-0.2
866
Normal
-0.2
465
Tumor
-0.2
452
Normal
-0.2
867
Tumor
-0.2
1046
Normal
-0.2
698
Normal
-0.2
938
Normal
-0.2
696
Normal
-0.2
466
Normal
-0.2
878
Normal
-0.2
527
Tumor
-0.2
618
Normal
-0.2
862
Normal
-0.2
824
Normal
-0.2
1026
Normal
-0.2
722
Normal
-0.2
462
Normal
-0.2
925
Tumor
-0.2
982
Normal
-0.2
665
Tumor
-0.2
723
Tumor
-0.2
714
Normal
-0.2
422
Normal
-0.3
746
Normal
-0.3
534
Normal
-0.3
915
Tumor
-0.3
424
Normal
-0.3
968
Normal
-0.3
955
Tumor
-0.3
1041
Tumor
-0.3
977
Tumor
-0.3
363
Tumor
-0.3
414
Normal
-0.3
526
Normal
-0.3
616
Normal
-0.3
554
Normal
-0.3
715
Tumor
-0.3
964
Normal
-0.3
911
Tumor
-0.3
1027
Tumor
-0.3
1014
Normal
-0.3
448
Normal
-0.3
743
Tumor
-0.3
1032
Normal
-0.3
423
Tumor
-0.3
533
Tumor
-0.3
1022
Normal
-0.4
873
Tumor
-0.4
112
Tumor
-0.4
937
Tumor
-0.4
487
Tumor
-0.4
426
Normal
-0.4
741
Tumor
-0.4
428
Normal
-0.4
685
Tumor
-0.4
431
Tumor
-0.4
443
Tumor
-0.5
473
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
