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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED25 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
52.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
26.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED25 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.1
743
Tumor
0.9
131
Tumor
0.9
641
Tumor
0.9
917
Tumor
0.9
497
Tumor
0.9
737
Tumor
0.8
727
Tumor
0.8
865
Tumor
0.8
635
Tumor
0.7
647
Tumor
0.7
627
Tumor
0.7
427
Tumor
0.7
277
Tumor
0.7
615
Tumor
0.7
425
Tumor
0.7
211
Tumor
0.7
921
Tumor
0.6
112
Tumor
0.6
661
Tumor
0.6
617
Tumor
0.6
285
Tumor
0.6
741
Tumor
0.6
483
Tumor
0.5
471
Tumor
0.5
913
Tumor
0.5
141
Tumor
0.5
671
Tumor
0.5
983
Tumor
0.5
297
Tumor
0.5
411
Tumor
0.5
461
Tumor
0.5
161
Tumor
0.5
331
Tumor
0.5
817
Tumor
0.5
123
Tumor
0.4
881
Tumor
0.4
113
Tumor
0.4
171
Tumor
0.4
815
Tumor
0.4
977
Tumor
0.4
663
Tumor
0.4
573
Tumor
0.4
642
Normal
0.4
525
Tumor
0.4
665
Tumor
0.4
877
Tumor
0.4
283
Tumor
0.4
227
Tumor
0.4
493
Tumor
0.3
261
Tumor
0.3
313
Tumor
0.3
431
Tumor
0.3
124
Normal
0.3
923
Tumor
0.3
491
Tumor
0.3
571
Tumor
0.3
513
Tumor
0.3
1031
Tumor
0.3
477
Tumor
0.3
465
Tumor
0.3
813
Tumor
0.3
1013
Tumor
0.3
883
Tumor
0.3
823
Tumor
0.3
114
Normal
0.3
355
Tumor
0.3
636
Normal
0.3
424
Normal
0.2
1015
Tumor
0.2
911
Tumor
0.2
311
Tumor
0.2
662
Normal
0.2
147
Tumor
0.2
1021
Tumor
0.2
567
Tumor
0.2
443
Tumor
0.2
616
Normal
0.2
125
Tumor
0.2
618
Normal
0.2
628
Normal
0.2
851
Tumor
0.2
976
Normal
0.2
918
Normal
0.2
135
Tumor
0.2
563
Tumor
0.2
515
Tumor
0.2
126
Normal
0.2
363
Tumor
0.2
137
Tumor
0.2
982
Normal
0.2
724
Normal
0.2
127
Tumor
0.2
428
Normal
0.2
435
Tumor
0.2
258
Normal
0.2
463
Tumor
0.2
814
Normal
0.2
421
Tumor
0.1
433
Tumor
0.1
487
Tumor
0.1
423
Tumor
0.1
517
Tumor
0.1
922
Normal
0.1
185
Tumor
0.1
861
Tumor
0.1
267
Tumor
0.1
128
Normal
0.1
516
Normal
0.1
873
Tumor
0.1
975
Tumor
0.1
492
Normal
0.1
981
Tumor
0.1
967
Tumor
0.1
1025
Tumor
0.1
451
Tumor
0.1
415
Tumor
0.1
867
Tumor
0.1
557
Tumor
0.1
228
Normal
0.1
984
Normal
0.1
111
Normal
0.0
672
Normal
0.0
518
Normal
0.0
924
Normal
0.0
231
Tumor
0.0
816
Normal
0.0
514
Normal
0.0
232
Normal
0.0
455
Tumor
0.0
188
Normal
0.0
523
Tumor
0.0
964
Normal
0.0
666
Normal
0.0
526
Normal
0.0
572
Normal
0.0
327
Tumor
0.0
268
Normal
0.0
445
Tumor
0.0
558
Normal
0.0
223
Tumor
0.0
915
Tumor
0.0
422
Normal
0.0
925
Tumor
0.0
413
Tumor
0.0
528
Normal
0.0
467
Tumor
0.0
414
Normal
0.0
664
Normal
0.0
958
Normal
0.0
434
Normal
-0.1
777
Tumor
-0.1
272
Normal
-0.1
146
Normal
-0.1
524
Normal
-0.1
436
Normal
-0.1
738
Normal
-0.1
1041
Tumor
-0.1
648
Normal
-0.1
271
Tumor
-0.1
574
Normal
-0.1
564
Normal
-0.1
187
Tumor
-0.1
162
Normal
-0.1
328
Normal
-0.1
262
Normal
-0.1
568
Normal
-0.1
278
Normal
-0.1
286
Normal
-0.1
1014
Normal
-0.1
142
Normal
-0.1
257
Tumor
-0.1
863
Tumor
-0.1
1042
Normal
-0.1
364
Normal
-0.1
212
Normal
-0.1
356
Normal
-0.1
444
Normal
-0.1
172
Normal
-0.1
744
Normal
-0.2
857
Tumor
-0.2
1027
Tumor
-0.2
136
Normal
-0.2
148
Normal
-0.2
916
Normal
-0.2
145
Tumor
-0.2
968
Normal
-0.2
1016
Normal
-0.2
474
Normal
-0.2
1028
Normal
-0.2
298
Normal
-0.2
186
Normal
-0.2
426
Normal
-0.2
755
Tumor
-0.2
978
Normal
-0.2
534
Normal
-0.2
498
Normal
-0.2
545
Tumor
-0.2
914
Normal
-0.2
312
Normal
-0.2
472
Normal
-0.2
728
Normal
-0.2
484
Normal
-0.2
1022
Normal
-0.2
284
Normal
-0.2
412
Normal
-0.2
416
Normal
-0.2
874
Normal
-0.2
966
Normal
-0.2
224
Normal
-0.3
533
Tumor
-0.3
818
Normal
-0.3
1026
Normal
-0.3
965
Tumor
-0.3
778
Normal
-0.3
824
Normal
-0.3
314
Normal
-0.3
138
Normal
-0.3
468
Normal
-0.3
963
Tumor
-0.3
1032
Normal
-0.3
785
Tumor
-0.3
456
Normal
-0.3
742
Normal
-0.3
446
Normal
-0.3
878
Normal
-0.3
858
Normal
-0.3
132
Normal
-0.3
452
Normal
-0.4
745
Tumor
-0.4
864
Normal
-0.4
926
Normal
-0.4
494
Normal
-0.4
466
Normal
-0.4
852
Normal
-0.4
462
Normal
-0.4
723
Tumor
-0.4
537
Tumor
-0.4
478
Normal
-0.4
464
Normal
-0.4
866
Normal
-0.4
432
Normal
-0.4
527
Tumor
-0.4
546
Normal
-0.4
481
Tumor
-0.5
786
Normal
-0.5
868
Normal
-0.5
332
Normal
-0.5
862
Normal
-0.5
746
Normal
-0.6
353
Tumor
-0.6
957
Tumor
-0.6
488
Normal
-0.6
553
Tumor
-0.6
882
Normal
-0.7
538
Normal
-0.7
341
Tumor
-0.8
554
Normal
-0.8
756
Normal
-0.8
884
Normal
-0.8
482
Normal
-0.8
342
Normal
-0.8
344
Normal
-0.9
912
Normal
-0.9
358
Normal
-1.0
357
Tumor
-1.4
352
Normal
-1.4
354
Normal
-1.5
351
Tumor
-1.8
343
Tumor
-1.8
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
